FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0425600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to UDP-glucose dehydrogenase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.0163) R2 : 0.0073
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0627 (0.0342) R2dN8 : 0.00943 R2N8 : 0.0073
σ : 0.306
deviance : 43.08
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.99 0.297 2.99 -0.0264 0.0462 -0.298 -0.242 1.12 0.054 4.84 1.098 16 -- --
41.03 0.298 2.98 0.0183 0.0485 -0.226 -0.379 -- 0.0626 4.63 1.014 16 -- --
40.12 0.295 2.99 -0.0263 0.0589 -0.284 -- 1.2 0.0568 5.44 1.1 16 -- --
41.32 0.299 2.98 0.0219 0.0629 -0.211 -- -- 0.0628 6.37 1.1 16 -- --
40.23 0.295 2.99 -0.0308 -- -0.326 -- 1.23 0.0553 -- 1.082 16 -- --
42.03 0.304 2.98 0.0447 0.118 -- -0.327 -- 0.0636 4.87 -- -- -- --
42.27 0.304 2.98 0.0462 0.119 -- -- -- 0.0654 5.56 -- -- -- --
41.52 0.3 2.98 0.0183 -- -0.241 -- -- 0.0691 -- 1.085 16 -- --
41.32 0.299 2.98 -- 0.0667 -0.214 -- -- 0.0654 6.62 1.037 16 -- --
43.01 0.306 2.98 0.0501 -- -- -- -- 0.0683 -- -- -- -- --
42.33 0.304 2.98 -- 0.12 -- -- -- 0.0602 5.55 -- -- -- --
41.53 0.3 2.98 -- -- -0.243 -- -- 0.0671 -- 1.061 16 -- --
43.08 0.306 2.98 -- -- -- -- -- 0.0627 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 35.49 temperature 20.0 30 > th dose dependent rect. 2 1
2 35.53 temperature 20.0 30 > th dose independent rect. 2 1
3 35.54 atmosphere 1005.0 30 > th dose dependent rect. 2 1
4 35.55 radiation 1.0 14400 < th dose dependent rect. 3 1
8 35.60 humidity 90.0 30 > th dose independent rect. 2 1
9 35.60 wind 3.0 30 < th dose dependent rect. 2 1
16 35.61 wind 9.0 1440 < th dose independent rect. 3 1
17 35.61 temperature 10.0 1440 > th dose independent rect. 3 1
20 35.61 temperature 30.0 1440 < th dose independent rect. 3 1
24 35.61 humidity 50.0 1440 > th dose independent rect. 3 1
33 35.61 atmosphere 995.0 1440 > th dose independent rect. 3 1
34 35.61 radiation 1.0 1440 < th dose independent rect. 3 1
54 35.61 temperature 10.0 1440 > th dose independent rect. 4 23
59 35.61 radiation 1.0 1440 < th dose dependent rect. 3 1
71 35.64 atmosphere 1005.0 30 > th dose independent rect. 2 1
75 35.66 wind 3.0 30 < th dose independent rect. 2 1
78 35.67 humidity 80.0 30 > th dose dependent rect. 2 1
80 35.68 humidity 60.0 30 > th dose dependent rect. 2 1
85 35.70 temperature 10.0 30 > th dose independent rect. 2 1
87 35.70 temperature 30.0 30 < th dose independent rect. 2 1
88 35.70 humidity 50.0 30 > th dose independent rect. 2 1
93 35.70 atmosphere 1010.0 30 < th dose independent rect. 2 1
95 35.70 radiation 1.0 30 < th dose independent rect. 2 1
100 35.70 precipitation 0.1 30 < th dose independent rect. 2 1
101 35.70 temperature 10.0 30 > th dose independent rect. 3 23
102 35.70 radiation 1.0 30 < th dose dependent rect. 2 1
107 35.70 precipitation 0.1 30 < th dose dependent rect. 2 1
110 35.83 atmosphere 1015.0 30 < th dose dependent rect. 2 1
118 35.98 temperature 30.0 30 < th dose dependent rect. 2 1
121 36.05 wind 1.0 30 > th dose independent rect. 2 1
126 36.14 atmosphere 995.0 30 > th dose independent rect. 3 23
134 36.26 precipitation 0.1 30 < th dose independent rect. 3 23
136 36.26 precipitation 0.1 30 < th dose dependent rect. 3 23
172 36.48 wind 9.0 30 < th dose independent rect. 3 23
195 38.07 humidity 50.0 30 > th dose independent rect. 3 23
211 38.81 temperature 25.0 720 > th dose independent rect. 1 1
217 38.85 temperature 25.0 1440 < th dose independent rect. 1 1
218 38.88 temperature 30.0 30 < th dose independent rect. 3 23
222 38.93 temperature 25.0 270 > th dose independent rect. 23 4
223 38.93 temperature 25.0 270 > th dose independent rect. 23 7
237 39.07 temperature 25.0 720 < th dose independent rect. 20 6
254 39.08 temperature 25.0 90 > th dose independent rect. 1 5
271 39.15 temperature 25.0 720 > th dose independent rect. 19 8
292 39.28 atmosphere 1015.0 30 < th dose independent rect. 3 23
300 39.32 precipitation 0.1 720 < th dose independent rect. 7 8
302 39.32 precipitation 0.1 720 < th dose dependent rect. 7 8
303 39.33 wind 9.0 720 < th dose independent rect. 19 8
308 39.35 precipitation 0.1 720 < th dose independent rect. 19 8
309 39.35 precipitation 0.1 720 < th dose dependent rect. 19 8
320 39.39 temperature 25.0 270 > th dose dependent rect. 23 7
325 39.41 temperature 10.0 720 > th dose independent rect. 7 8
327 39.41 atmosphere 995.0 720 > th dose independent rect. 7 8
328 39.41 atmosphere 1015.0 720 < th dose independent rect. 7 8
330 39.41 temperature 10.0 720 > th dose independent rect. 15 16
343 39.46 temperature 10.0 720 > th dose independent rect. 19 8
345 39.46 humidity 50.0 720 > th dose independent rect. 19 8
346 39.46 atmosphere 995.0 720 > th dose independent rect. 19 8
347 39.46 radiation 1.0 720 < th dose independent rect. 19 8
352 39.46 temperature 10.0 720 > th dose independent rect. 3 16
353 39.46 radiation 1.0 720 < th dose dependent rect. 19 8
364 39.49 precipitation 0.1 720 < th dose independent rect. 3 16
366 39.49 precipitation 0.1 720 < th dose dependent rect. 3 16
373 39.51 atmosphere 995.0 720 > th dose independent rect. 15 16
381 39.55 humidity 90.0 90 < th dose independent rect. 2 1
386 39.55 atmosphere 995.0 720 > th dose independent rect. 3 16
407 39.62 wind 1.0 10 < th dose independent rect. 15 12
454 39.74 wind 1.0 30 > th dose independent rect. 3 23
455 39.74 temperature 25.0 720 > th dose dependent rect. 19 7
466 39.76 wind 3.0 30 < th dose dependent rect. 2 5
467 39.76 wind 9.0 30 < th dose dependent rect. 3 23
481 39.80 wind 1.0 10 > th dose independent sin 14 NA
485 39.80 atmosphere 1015.0 720 < th dose independent rect. 3 16
506 39.86 radiation 40.0 720 < th dose independent rect. 15 16
557 39.98 temperature 25.0 720 > th dose independent sin 12 NA
561 39.99 temperature 25.0 720 < th dose independent sin 12 NA
570 40.00 wind 1.0 10 < th dose independent rect. 6 21
580 40.02 temperature 25.0 720 > th dose dependent rect. 20 1
594 40.04 precipitation 0.1 720 < th dose independent rect. 15 16
595 40.04 wind 1.0 10 > th dose independent rect. 21 23
600 40.04 precipitation 0.1 720 < th dose dependent rect. 15 16
621 40.08 wind 1.0 10 > th dose independent rect. 12 23
639 40.11 temperature 10.0 30 > th dose dependent rect. 3 23
655 40.15 wind 1.0 10 > th dose independent rect. 7 23
677 40.18 radiation 10.0 30 < th dose dependent rect. 3 23
723 40.24 wind 1.0 10 > th dose independent rect. 23 12
731 40.25 humidity 50.0 720 > th dose independent rect. 7 8
744 40.27 wind 9.0 720 < th dose independent rect. 15 16
768 40.31 wind 9.0 720 < th dose independent rect. 7 8
800 40.33 atmosphere 995.0 720 > th dose independent rect. 21 18
818 40.34 wind 9.0 720 < th dose independent rect. 3 8
825 40.35 wind 1.0 10 > th dose independent rect. 21 14
826 40.35 wind 9.0 720 < th dose dependent rect. 2 1
831 40.35 temperature 20.0 30 > th dose dependent rect. 20 11
832 40.35 radiation 40.0 30 < th dose dependent rect. 3 23
836 40.36 humidity 50.0 720 > th dose independent rect. 3 8
839 40.36 precipitation 0.1 720 < th dose independent rect. 21 18
845 40.36 precipitation 0.1 720 < th dose dependent rect. 21 18
850 40.37 atmosphere 995.0 10 > th dose independent rect. 14 12
863 40.38 wind 9.0 720 < th dose independent rect. 15 6
864 40.38 temperature 10.0 720 > th dose independent rect. 15 6
868 40.38 temperature 30.0 10 < th dose independent rect. 2 12
869 40.38 radiation 40.0 30 < th dose independent rect. 14 12
870 40.38 temperature 10.0 720 > th dose independent rect. 21 18
874 40.39 wind 1.0 720 > th dose independent rect. 15 6
875 40.39 humidity 60.0 720 > th dose independent rect. 3 6
879 40.39 humidity 50.0 720 > th dose independent rect. 21 18
881 40.39 precipitation 0.1 720 < th dose independent rect. 3 23
883 40.39 precipitation 0.1 720 < th dose dependent rect. 3 23
885 40.40 wind 9.0 720 < th dose independent rect. 3 6
886 40.40 temperature 10.0 720 > th dose independent rect. 3 6
889 40.40 atmosphere 995.0 720 > th dose independent rect. 3 6
890 40.40 atmosphere 1015.0 720 < th dose independent rect. 3 6
891 40.40 precipitation 0.1 720 < th dose independent rect. 3 6
892 40.40 wind 9.0 10 < th dose independent rect. 14 12
893 40.40 temperature 10.0 720 > th dose independent rect. 9 18
899 40.40 precipitation 0.1 720 < th dose dependent rect. 3 6
903 40.41 precipitation 0.1 720 < th dose independent rect. 15 6
906 40.41 precipitation 0.1 10 < th dose independent rect. 2 12
910 40.41 precipitation 0.1 720 < th dose dependent rect. 15 6
911 40.41 precipitation 0.1 10 < th dose dependent rect. 2 12
918 40.42 atmosphere 1015.0 720 < th dose independent rect. 15 6
919 40.42 humidity 50.0 10 > th dose independent rect. 2 12
925 40.42 wind 1.0 30 < th dose dependent rect. 22 5
933 40.43 temperature 10.0 720 > th dose independent rect. 3 8
934 40.43 temperature 10.0 720 > th dose independent rect. 15 8
935 40.43 atmosphere 995.0 720 > th dose independent rect. 3 8
936 40.43 temperature 10.0 10 > th dose independent rect. 2 12
938 40.43 temperature 10.0 10 > th dose independent rect. 14 12
939 40.43 atmosphere 995.0 10 > th dose independent rect. 2 12
941 40.43 atmosphere 1015.0 10 < th dose independent rect. 2 12
943 40.43 temperature 10.0 720 > th dose independent rect. 11 16
944 40.43 temperature 10.0 720 > th dose independent rect. 23 16
950 40.44 wind 1.0 10 > th dose independent no NA NA
955 40.44 radiation 40.0 720 < th dose independent rect. 15 6
962 40.44 precipitation 0.1 10 < th dose independent rect. 14 12
974 40.44 precipitation 0.1 10 < th dose dependent rect. 14 12
994 40.46 atmosphere 995.0 720 > th dose independent rect. 14 1
997 40.46 wind 1.0 10 > th dose independent rect. 14 15
998 40.46 atmosphere 995.0 720 > th dose independent rect. 23 16