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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0581600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to UDP-glucose dehydrogenase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.55 (0.0465) R2 : 0.395
β1 : 0.8 (0.173) R2dD : 0.0301 R2D : 0.00573
β2 : 1.83 (0.118) R2dC : 0.323 R2C : 0.306
β3 : -1.32 (0.176) R2dE : 0.0792 R2E : 0.0447
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0531 (0.0995) R2dN8 : 0.000515 R2N8 : -0.00186
σ : 0.867
deviance : 346.55
__
_____
C
peak time of C : 20
E
wheather : humidity
threshold : 76.12
memory length : 1293
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
343.54 0.871 4.52 0.93 1.82 -1.46 0.154 1.64 0.0997 20 79.08 1303 -- --
346.43 0.867 4.55 0.816 1.83 -1.34 0.23 -- 0.0604 20 76 1293 -- --
342.9 0.862 4.52 0.944 1.84 -1.46 -- 1.85 0.0986 20.1 77.31 1262 -- --
346.55 0.867 4.55 0.8 1.83 -1.32 -- -- 0.0531 20 76.12 1293 -- --
522.3 1.06 4.48 0.895 -- -1.39 -- 1.9 0.0692 -- 80.64 1369 -- --
387.39 0.923 4.53 0.552 1.82 -- -0.0199 -- 0.136 19.7 -- -- -- --
387.39 0.922 4.53 0.552 1.82 -- -- -- 0.136 19.7 -- -- -- --
525.06 1.07 4.5 0.741 -- -1.27 -- -- 0.0613 -- 80.6 1379 -- --
362.48 0.887 4.56 -- 1.83 -1.18 -- -- -0.0023 20.1 78.76 1274 -- --
565.35 1.11 4.49 0.528 -- -- -- -- 0.109 -- -- -- -- --
395.43 0.93 4.54 -- 1.81 -- -- -- 0.0746 19.7 -- -- -- --
538.56 1.08 4.51 -- -- -1.17 -- -- 0.0205 -- 85.8 1383 -- --
572.7 1.12 4.5 -- -- -- -- -- 0.0505 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 338.53 atmosphere 1010.0 270 < th dose independent rect. 10 5
3 339.87 humidity 50.0 270 > th dose independent rect. 10 6
5 340.31 atmosphere 1000.0 270 > th dose independent rect. 23 16
6 340.33 precipitation 0.1 270 < th dose independent rect. 15 20
7 340.33 precipitation 0.1 270 < th dose dependent rect. 15 20
8 340.49 precipitation 0.1 270 < th dose independent rect. 16 18
9 340.49 precipitation 0.1 270 < th dose dependent rect. 16 18
11 341.66 temperature 20.0 270 > th dose independent rect. 11 4
15 342.18 humidity 50.0 270 > th dose independent rect. 11 4
16 342.26 temperature 15.0 270 > th dose independent rect. 10 6
17 342.34 radiation 20.0 10 < th dose dependent rect. 23 17
18 342.48 atmosphere 1015.0 270 < th dose dependent rect. 11 4
32 343.17 humidity 90.0 270 < th dose independent rect. 15 8
34 343.26 wind 9.0 270 < th dose independent rect. 11 4
37 343.54 humidity 50.0 270 > th dose independent rect. 23 16
38 343.69 wind 9.0 270 < th dose independent rect. 10 6
41 343.83 temperature 20.0 10 > th dose independent rect. 12 17
46 343.95 temperature 10.0 270 > th dose independent rect. 15 20
47 343.98 atmosphere 995.0 270 > th dose independent rect. 11 4
48 344.03 wind 1.0 270 > th dose independent rect. 15 8
49 344.04 wind 9.0 270 < th dose independent rect. 15 20
50 344.05 humidity 70.0 720 > th dose dependent rect. 19 1
51 344.11 precipitation 0.1 270 < th dose independent rect. 11 4
52 344.11 precipitation 0.1 270 < th dose dependent rect. 11 4
57 344.23 wind 7.0 270 < th dose independent rect. 16 18
58 344.24 radiation 1.0 270 < th dose independent sin 11 NA
60 344.32 radiation 1.0 270 < th dose independent rect. 20 20
63 344.42 wind 9.0 270 < th dose independent rect. 23 16
68 344.57 humidity 90.0 270 < th dose independent rect. 11 4
71 344.59 temperature 10.0 270 > th dose independent rect. 16 18
73 344.65 precipitation 0.1 270 < th dose independent rect. 10 6
74 344.65 precipitation 0.1 270 < th dose dependent rect. 10 6
75 344.76 precipitation 0.1 270 < th dose independent rect. 15 8
76 344.76 precipitation 0.1 270 < th dose dependent rect. 15 8
80 344.82 temperature 10.0 270 > th dose dependent rect. 10 5
81 344.92 atmosphere 995.0 270 > th dose independent rect. 10 6
86 344.97 wind 1.0 270 > th dose independent rect. 11 4
88 345.03 humidity 80.0 1440 < th dose dependent rect. 11 3
90 345.06 radiation 1.0 270 < th dose dependent rect. 20 21
93 345.09 atmosphere 1015.0 270 < th dose independent rect. 23 16
95 345.20 humidity 70.0 1440 < th dose independent rect. 11 2
96 345.22 wind 9.0 270 < th dose independent rect. 15 8
97 345.32 radiation 1.0 270 < th dose independent rect. 20 12
101 345.43 radiation 1.0 270 > th dose independent sin 11 NA
105 345.54 humidity 90.0 270 < th dose independent rect. 10 6
107 345.60 humidity 50.0 1440 > th dose dependent rect. 11 3
111 345.66 radiation 1.0 90 < th dose independent rect. 23 17
114 345.70 temperature 10.0 270 > th dose independent rect. 15 8
115 345.70 temperature 10.0 270 > th dose independent rect. 23 16
117 345.70 humidity 90.0 720 > th dose dependent rect. 20 1
122 345.76 wind 1.0 270 > th dose independent rect. 10 6
129 345.89 radiation 40.0 270 < th dose independent rect. 15 8
131 345.98 radiation 1.0 270 < th dose dependent rect. 20 12
133 346.03 humidity 60.0 720 > th dose dependent rect. 15 7
135 346.08 precipitation 0.1 270 < th dose independent rect. 2 9
137 346.08 precipitation 0.1 270 < th dose dependent rect. 2 9
141 346.14 radiation 1.0 270 < th dose dependent sin 11 NA
142 346.18 humidity 80.0 1440 < th dose dependent rect. 6 10
151 346.30 radiation 1.0 1440 > th dose independent rect. 9 3
152 346.30 radiation 1.0 1440 > th dose independent rect. 8 5
184 346.58 humidity 70.0 1440 > th dose independent rect. 11 2
185 346.58 wind 9.0 270 < th dose dependent rect. 11 4
187 346.61 humidity 50.0 270 > th dose independent rect. 22 18
194 346.70 humidity 90.0 720 < th dose dependent rect. 15 6
196 346.70 atmosphere 995.0 10 > th dose dependent rect. 18 18
197 346.71 temperature 20.0 270 > th dose independent rect. 10 16
205 346.74 radiation 1.0 270 > th dose independent rect. 16 18
209 346.77 atmosphere 995.0 270 > th dose independent rect. 16 18
231 346.92 humidity 90.0 720 < th dose dependent rect. 15 8
236 346.96 atmosphere 995.0 270 > th dose independent rect. 15 20
244 347.01 radiation 20.0 10 < th dose dependent sin 8 NA
250 347.05 humidity 50.0 270 > th dose independent rect. 11 16
273 347.31 humidity 80.0 1440 < th dose dependent sin 2 NA
283 347.36 humidity 70.0 720 > th dose independent rect. 14 8
308 347.56 humidity 70.0 720 > th dose independent sin 14 NA
311 347.59 radiation 1.0 270 > th dose independent rect. 15 20
316 347.62 humidity 80.0 1440 < th dose dependent rect. 20 20
322 347.65 atmosphere 1010.0 90 < th dose independent rect. 23 18
332 347.71 atmosphere 995.0 90 > th dose dependent rect. 17 19
338 347.73 precipitation 0.1 270 < th dose independent rect. 23 16
341 347.73 precipitation 0.1 270 < th dose dependent rect. 23 16
343 347.77 humidity 70.0 720 < th dose independent rect. 15 18
374 347.97 temperature 20.0 90 > th dose independent rect. 23 18
394 348.06 humidity 70.0 720 > th dose independent rect. 14 16
415 348.23 humidity 70.0 1440 < th dose independent rect. 18 20
449 348.45 precipitation 0.1 10 < th dose independent rect. 18 18
452 348.45 precipitation 0.1 10 < th dose dependent rect. 18 18
468 348.54 atmosphere 1000.0 270 > th dose independent rect. 21 8
492 348.65 humidity 90.0 90 < th dose independent rect. 17 18
496 348.67 atmosphere 1005.0 10 > th dose independent rect. 18 18
504 348.72 radiation 1.0 90 > th dose independent rect. 17 20
524 348.81 atmosphere 995.0 270 > th dose independent rect. 15 8
525 348.82 humidity 80.0 1440 < th dose independent rect. 7 7
531 348.83 humidity 50.0 720 > th dose dependent sin 17 NA
539 348.86 atmosphere 1015.0 10 < th dose dependent rect. 12 6
549 348.92 humidity 70.0 1440 > th dose independent rect. 19 19
559 348.99 humidity 60.0 1440 > th dose independent rect. 13 3
577 349.05 radiation 1.0 30 > th dose independent rect. 18 18
619 349.21 humidity 80.0 720 < th dose dependent rect. 15 19
643 349.30 temperature 20.0 10 > th dose independent rect. 23 19
650 349.31 temperature 10.0 270 > th dose independent rect. 2 9
651 349.31 atmosphere 995.0 270 > th dose independent rect. 2 9
652 349.31 atmosphere 1015.0 270 < th dose independent rect. 2 9
653 349.31 temperature 10.0 270 > th dose independent rect. 11 15
664 349.35 atmosphere 1010.0 10 < th dose independent rect. 12 6
695 349.41 temperature 20.0 10 > th dose independent rect. 12 6
747 349.54 radiation 1.0 1440 > th dose dependent rect. 11 5
766 349.63 humidity 50.0 270 > th dose dependent rect. 12 2
768 349.64 radiation 1.0 1440 < th dose dependent rect. 7 10
778 349.68 radiation 1.0 1440 > th dose dependent rect. 11 3
783 349.70 wind 7.0 270 < th dose independent rect. 16 5
803 349.76 humidity 70.0 1440 > th dose independent rect. 24 14
807 349.77 humidity 70.0 1440 > th dose independent rect. 2 12
809 349.77 radiation 1.0 1440 > th dose dependent rect. 8 8
813 349.79 humidity 70.0 1440 > th dose independent rect. 4 10
818 349.80 radiation 10.0 1440 > th dose dependent rect. 11 22
819 349.81 radiation 20.0 1440 < th dose dependent rect. 11 1
873 349.90 radiation 10.0 90 < th dose dependent rect. 23 9
883 349.94 radiation 40.0 1440 > th dose independent rect. 11 4
891 349.96 radiation 1.0 30 > th dose independent rect. 5 7
913 350.00 radiation 1.0 270 > th dose independent rect. 11 4
921 350.02 precipitation 0.1 10 < th dose independent rect. 12 6
922 350.02 precipitation 0.1 10 < th dose dependent rect. 12 6
979 350.09 radiation 1.0 1440 < th dose independent rect. 9 4
983 350.09 radiation 1.0 1440 < th dose dependent rect. 9 4
993 350.10 wind 1.0 10 > th dose independent rect. 12 6