BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0406100 Os03g0406100|Os03g0406100
(247 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0406100 SPX, N-terminal domain containing protein 454 e-128
Os10g0392600 SPX, N-terminal domain containing protein 265 3e-71
Os06g0603600 Similar to Ids4-like protein 217 6e-57
Os02g0202200 SPX, N-terminal domain containing protein 206 1e-53
Os03g0827500 SPX, N-terminal domain containing protein 135 4e-32
AK063600 106 2e-23
Os07g0614700 SPX, N-terminal domain containing protein 88 7e-18
>Os03g0406100 SPX, N-terminal domain containing protein
Length = 247
Score = 454 bits (1169), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/247 (91%), Positives = 226/247 (91%)
Query: 1 MKFGKRLKRQIEESLPEWRDHFLNYKELKRRLNAVSSPDPAAEARFLALLHAEVDKFNAF 60
MKFGKRLKRQIEESLPEWRDHFLNYKELKRRLNAVSSPDPAAEARFLALLHAEVDKFNAF
Sbjct: 1 MKFGKRLKRQIEESLPEWRDHFLNYKELKRRLNAVSSPDPAAEARFLALLHAEVDKFNAF 60
Query: 61 FLEQEEDFVIRQRELQERIQSSSSAAAEMEGRVRREVVDLHGEMVLLLNYSSINYTGLAK 120
FLEQEEDFVIRQRELQERIQSSSSAAAEMEGRVRREVVDLHGEMVLLLNYSSINYTGLAK
Sbjct: 61 FLEQEEDFVIRQRELQERIQSSSSAAAEMEGRVRREVVDLHGEMVLLLNYSSINYTGLAK 120
Query: 121 ILKKYDKRTGGVLRLPVIAGVLRQPFYATDLLSSLVRDCEAIMDAVFPSLPSPSXXXXXX 180
ILKKYDKRTGGVLRLPVIAGVLRQPFYATDLLSSLVRDCEAIMDAVFPSLPSPS
Sbjct: 121 ILKKYDKRTGGVLRLPVIAGVLRQPFYATDLLSSLVRDCEAIMDAVFPSLPSPSAAAAAA 180
Query: 181 XXXXXEQAIFRNTVAALLTMQEVRSGSSTYGHFSLPPMTPLPDSDWLIQSVQXXXXXXXX 240
EQAIFRNTVAALLTMQEVRSGSSTYGHFSLPPMTPLPDSDWLIQSVQ
Sbjct: 181 ARAAAEQAIFRNTVAALLTMQEVRSGSSTYGHFSLPPMTPLPDSDWLIQSVQPPPPPPPS 240
Query: 241 XXLIIPT 247
LIIPT
Sbjct: 241 SPLIIPT 247
>Os10g0392600 SPX, N-terminal domain containing protein
Length = 277
Score = 265 bits (676), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 148/260 (56%), Positives = 177/260 (68%), Gaps = 30/260 (11%)
Query: 1 MKFGKRLKRQIEESLPEWRDHFLNYKELKRRLN------AVSSPDPAAEARFLALLHAEV 54
MKFGKRLK+Q+EESLPEWRD FL YK LK+ + EA F+ LL EV
Sbjct: 1 MKFGKRLKKQVEESLPEWRDKFLAYKRLKKLVRLVSSSSGDVGGGGGGEAEFVRLLDGEV 60
Query: 55 DKFNAFFLEQEEDFVIRQRELQERIQS--------SSSAAAEMEGRVRREVVDLHGEMVL 106
D+ NAFFLEQEE+FVIRQRELQE ++ AAAEM RVR+E+VDLHGEMVL
Sbjct: 61 DRINAFFLEQEEEFVIRQRELQETVEKVAGGGGGGRRPAAAEMR-RVRKEIVDLHGEMVL 119
Query: 107 LLNYSSINYTGLAKILKKYDKRTGGVLRLPVIAGVLRQPFYATDLLSSLVRDCEAIMDAV 166
LLNYS++NYTGLAKILKKYDKRTG +LRLP I VLRQPF+ T+L+S LVRDCEA M+A+
Sbjct: 120 LLNYSAVNYTGLAKILKKYDKRTGRLLRLPFIEKVLRQPFFTTELISRLVRDCEATMEAI 179
Query: 167 FPSLPSPSXXXXXXXX------------XXXEQAIFRNTVAALLTMQEVRSGSSTYGHFS 214
F S + + +Q IFRNTVAAL TM+E+RSGSSTYG FS
Sbjct: 180 FTSSVATTAMAGDRRTWKGCSGDAGMAPMADQQGIFRNTVAALATMKELRSGSSTYGRFS 239
Query: 215 LPPMT--PLPDSDWLIQSVQ 232
LPPM P+SD ++QS++
Sbjct: 240 LPPMAAPASPESD-VLQSIR 258
>Os06g0603600 Similar to Ids4-like protein
Length = 295
Score = 217 bits (552), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 120/271 (44%), Positives = 159/271 (58%), Gaps = 53/271 (19%)
Query: 1 MKFGKRLKRQIEESLPEWRDHFLNYKELKRRLNAVSSPDPAAEAR--------------- 45
MKFGK L QI E+LPEWRD FL+YK+LK+RL + E +
Sbjct: 1 MKFGKSLSSQIVETLPEWRDKFLSYKDLKKRLKLIGGGGGGEERQAKRARVAADGGEEEA 60
Query: 46 -----------FLALLHAEVDKFNAFFLEQEEDFVIRQRELQERIQSSSSAAAEME-GRV 93
F+ LL AE+DKFN+FF+E+EE+++IRQ+ELQ+R+ ++ ++ E RV
Sbjct: 61 AAAAMTPEEAGFMRLLEAELDKFNSFFVEKEEEYIIRQKELQDRVARAAGRESKEELMRV 120
Query: 94 RREVVDLHGEMVLLLNYSSINYTGLAKILKKYDKRTGGVLRLPVIAGVLRQPFYATDLLS 153
R+E+VD HGEMVLL NYS++NYTGL KILKKYDKRTG ++RLP I VL+QPF+ TDLL
Sbjct: 121 RKEIVDFHGEMVLLENYSALNYTGLVKILKKYDKRTGALIRLPFIQKVLQQPFFTTDLLY 180
Query: 154 SLVRDCEAIMDAVFPSL---------------------PSPSXXXXXX-----XXXXXEQ 187
LV+ CEA++D + PS PS S E
Sbjct: 181 KLVKQCEAMLDQLLPSNELSVSSEDGRGDSTNEDKPSNPSSSLVNGGTIPELDEIEYMES 240
Query: 188 AIFRNTVAALLTMQEVRSGSSTYGHFSLPPM 218
+ TVAAL +++E+RSGSST FSLPP+
Sbjct: 241 MYMKGTVAALRSLKEIRSGSSTVSAFSLPPL 271
>Os02g0202200 SPX, N-terminal domain containing protein
Length = 280
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 119/273 (43%), Positives = 156/273 (57%), Gaps = 59/273 (21%)
Query: 1 MKFGKRLKRQIEESLPEWRDHFLNYKELKRRLNAVSSPDPAA------------------ 42
MKFGK L QI E PEWRD+FL+YK+LK+RLN +S
Sbjct: 1 MKFGKSLSSQIVEMQPEWRDNFLSYKDLKKRLNLISGGAAGERASKRRRVGGATAVTVTA 60
Query: 43 ---------EARFLALLHAEVDKFNAFFLEQEEDFVIRQRELQERIQSSSSAAAEMEGRV 93
+A F+ LL AE+DKFN FFLE+EE++VI+Q+EL+ER A+AE RV
Sbjct: 61 AAAGGMTLEQAGFVGLLDAELDKFNFFFLEKEEEYVIKQKELRER----KMASAEEVMRV 116
Query: 94 RREVVDLHGEMVLLLNYSSINYTGLAKILKKYDKRTGGVLRLPVIAGVLRQPFYATDLLS 153
R+E+VDLHGEMVLL NYS++NYTGL KILKKYDKRTG ++RLP + VL+QPF+ TDLL
Sbjct: 117 RKEIVDLHGEMVLLENYSALNYTGLVKILKKYDKRTGSMIRLPFVQKVLQQPFFTTDLLY 176
Query: 154 SLVRDCEAIMDAVFPSLPSPSXXXXXXXXXXXEQ-------------------------- 187
LV++CE ++D + P+ E+
Sbjct: 177 KLVKECEEMLDQLMPTNEHSVASEDGKDDSEGEEKGSKPSSSSSANGGAVPGEAEAEDER 236
Query: 188 -AIFRNTV-AALLTMQEVRSGSSTYGHFSLPPM 218
++TV AAL ++E+RSGSST FSLPP+
Sbjct: 237 STDMKSTVTAALRALREIRSGSSTVSVFSLPPL 269
>Os03g0827500 SPX, N-terminal domain containing protein
Length = 277
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 125/242 (51%), Gaps = 49/242 (20%)
Query: 1 MKFGKRLKRQIEESLPEWRDHFLNYKELKRRLNAVSSPDPAAEARFLALLHAEVDKFNAF 60
MKFGK + +EE+LP WRD +L YK LK+ + + N F
Sbjct: 1 MKFGKDFRSHLEETLPAWRDKYLAYKSLKKLIKKL----------------------NDF 38
Query: 61 FLEQEEDFVIRQRELQERIQ----------SSSSAAAEMEGRVRREVVDLHGEMVLLLNY 110
++E+EE +VIR + L+ERI+ +S S E +R+ V +HGEM+LL Y
Sbjct: 39 YIEREEWYVIRLQVLKERIERVKAKKNGAFTSKSEFTEEMLEIRKAFVIIHGEMILLQTY 98
Query: 111 SSINYTGLAKILKKYDKRTGGVLRLPVIAGVLRQPFYATDLLSSLVRDCEAIMDAVFP-- 168
SS+N+ GL KILKKYDKRTGG+L LP QPF+ T+ L+ LVR+CEA ++ +FP
Sbjct: 99 SSLNFAGLVKILKKYDKRTGGLLSLPFTQRARHQPFFTTEPLTRLVRECEANLELLFPIE 158
Query: 169 --SLPSPSXXXX-------------XXXXXXXEQAIFRNTVAALLTMQEVRSGSSTYGHF 213
L S S ++R+T+AA+ +Q +R SSTY
Sbjct: 159 AEVLESASSSAKLQPQNDDAASHDPASSVDVETSDVYRSTLAAMKAIQGLRKASSTYNPL 218
Query: 214 SL 215
SL
Sbjct: 219 SL 220
>AK063600
Length = 82
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/62 (83%), Positives = 52/62 (83%)
Query: 186 EQAIFRNTVAALLTMQEVRSGSSTYGHFSLPPMTPLPDSDWLIQSVQXXXXXXXXXXLII 245
EQAIFRNTVAALLTMQEVRSGSSTYGHFSLPPMTPLPDSDWLIQSVQ LII
Sbjct: 21 EQAIFRNTVAALLTMQEVRSGSSTYGHFSLPPMTPLPDSDWLIQSVQPPPPPPPSSPLII 80
Query: 246 PT 247
PT
Sbjct: 81 PT 82
>Os07g0614700 SPX, N-terminal domain containing protein
Length = 134
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%), Gaps = 1/73 (1%)
Query: 1 MKFGKRLKRQIEESLPEWRDHFLNYKELKRRLNAVSSPDPAAEARFLALLHAEVDKFNAF 60
MKFGK LKRQIE+SLPEWRD F++YKELKR + ++S PA EA F+A L A++DK ++F
Sbjct: 1 MKFGKLLKRQIEQSLPEWRDKFVSYKELKRIVASISGS-PADEAAFVAALAADIDKIDSF 59
Query: 61 FLEQEEDFVIRQR 73
FLEQEE+FVIR R
Sbjct: 60 FLEQEEEFVIRHR 72
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,573,379
Number of extensions: 282035
Number of successful extensions: 895
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 888
Number of HSP's successfully gapped: 7
Length of query: 247
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 149
Effective length of database: 11,918,829
Effective search space: 1775905521
Effective search space used: 1775905521
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)