Os06g0603600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ids4-like protein.
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Os06g0603600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ids4-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 140.91 | 0.558 | 11.6 | -0.3 | 1.22 | -1.62 | 2.97 | 4.67 | -0.238 | 22.9 | 26.6 | 5987 | -- | -- |
| 145.1 | 0.561 | 11.7 | -0.3 | 1.3 | -1.71 | 3.1 | -- | -0.199 | 22.7 | 21.99 | 25710 | -- | -- |
| 177.21 | 0.62 | 11.6 | -0.335 | 1.2 | -1.58 | -- | 4.9 | -0.231 | 22.8 | 27.16 | 6011 | -- | -- |
| 175.96 | 0.618 | 11.7 | -0.0941 | 1.27 | -2.17 | -- | -- | -0.0345 | 23 | 21 | 24051 | -- | -- |
| 266.08 | 0.76 | 11.6 | -0.322 | -- | -1.55 | -- | 4.97 | -0.237 | -- | 27.1 | 5960 | -- | -- |
| 211.07 | 0.681 | 11.9 | -2.23 | 1.2 | -- | 2.84 | -- | -0.927 | 23 | -- | -- | -- | -- |
| 245.24 | 0.733 | 11.9 | -2.35 | 1.19 | -- | -- | -- | -0.936 | 23 | -- | -- | -- | -- |
| 268.47 | 0.766 | 11.8 | -2.12 | -- | -0.851 | -- | -- | -0.79 | -- | 27.1 | 5960 | -- | -- |
| 176.08 | 0.618 | 11.7 | -- | 1.25 | -2.22 | -- | -- | -0.00844 | 23.1 | 21.04 | 24104 | -- | -- |
| 333.06 | 0.853 | 11.8 | -2.32 | -- | -- | -- | -- | -0.928 | -- | -- | -- | -- | -- |
| 390.59 | 0.924 | 11.8 | -- | 1.17 | -- | -- | -- | -0.675 | 22.8 | -- | -- | -- | -- |
| 271.47 | 0.767 | 11.6 | -- | -- | -2.17 | -- | -- | -0.0299 | -- | 20.7 | 24665 | -- | -- |
| 475.28 | 1.02 | 11.8 | -- | -- | -- | -- | -- | -0.67 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 128.95 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 3 | 130.19 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 11 |
| 4 | 130.32 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 6 | 131.21 | temperature | 20.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 13 | 132.90 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 14 | 132.97 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 15 | 132.97 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 24 | 135.09 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 5 |
| 32 | 135.71 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 23 | 20 |
| 41 | 135.94 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 12 | 20 |
| 73 | 136.23 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 22 | 18 |
| 116 | 136.45 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 18 | 22 |
| 126 | 136.49 | humidity | 90.0 | 43200 | > th | dose dependent | no | NA | NA |
| 132 | 136.50 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 6 | 23 |
| 140 | 136.54 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 6 | NA |
| 172 | 136.67 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 7 | 22 |
| 179 | 136.68 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 197 | 136.74 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 22 |
| 206 | 136.78 | humidity | 90.0 | 43200 | > th | dose independent | sin | 6 | NA |
| 207 | 136.78 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 222 | 136.81 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 20 |
| 253 | 136.89 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 3 | 5 |
| 256 | 136.90 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 10 | 22 |
| 263 | 136.92 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 15 | NA |
| 320 | 137.07 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 2 | 8 |
| 334 | 137.12 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 2 | 9 |
| 354 | 137.19 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 363 | 137.22 | humidity | 90.0 | 43200 | > th | dose independent | no | NA | NA |
| 377 | 137.25 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 381 | 137.27 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 438 | 137.47 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 1 | 23 |
| 539 | 138.12 | humidity | 90.0 | 43200 | > th | dose independent | sin | 15 | NA |
| 564 | 138.27 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 572 | 138.32 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 577 | 138.34 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 624 | 138.67 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 631 | 138.75 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 668 | 139.03 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 675 | 139.06 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 678 | 139.07 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 24 | 19 |
| 682 | 139.08 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 7 | 22 |
| 684 | 139.09 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 686 | 139.10 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 703 | 139.19 | temperature | 15.0 | 43200 | > th | dose independent | rect. | 24 | 3 |
| 728 | 139.28 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 22 |
| 729 | 139.29 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 736 | 139.32 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 738 | 139.32 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 8 |
| 739 | 139.34 | temperature | 15.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 771 | 139.53 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 789 | 139.62 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 791 | 139.62 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 798 | 139.63 | radiation | 30.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 818 | 139.66 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 17 | 22 |
| 819 | 139.67 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 13 | 22 |
| 853 | 139.81 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 16 | 19 |
| 891 | 139.91 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 912 | 139.96 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 5 |
| 926 | 140.02 | humidity | 90.0 | 43200 | < th | dose independent | no | NA | NA |
| 960 | 140.11 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 982 | 140.18 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 987 | 140.20 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 20 | 11 |
| 999 | 140.23 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 20 | 8 |