Os03g0406100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SPX, N-terminal domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0406100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : SPX, N-terminal domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 668.18 | 1.21 | 4.21 | -1.84 | 0.0766 | 3.28 | 3.4 | -9.39 | -0.199 | 0.134 | 25 | 4406 | 9.91 | 1.12 |
| 884.2 | 1.38 | 4.61 | -2.86 | 0.272 | 4.5 | 3.44 | -- | -0.17 | 0.0219 | 24.8 | 4384 | 10 | 1.31 |
| 675.92 | 1.21 | 4.18 | -1.97 | 0.284 | 3.71 | -- | -9.74 | -0.0914 | 0.00146 | 25 | 4753 | 9.88 | 0.917 |
| 869.94 | 1.37 | 4.64 | -3.74 | 0.395 | 5.21 | -- | -- | -0.628 | 23.4 | 24.9 | 4630 | 10.4 | 0.916 |
| 676.3 | 1.21 | 4.2 | -1.85 | -- | 3.53 | -- | -11 | -0.147 | -- | 24.93 | 4673 | 9.88 | 0.798 |
| 1249.51 | 1.66 | 5.09 | -7.38 | 0.143 | -- | -3.79 | -- | -2.65 | 11.8 | -- | -- | -- | -- |
| 1309.36 | 1.69 | 5.1 | -7.54 | 0.268 | -- | -- | -- | -2.67 | 8.23 | -- | -- | -- | -- |
| 850.84 | 1.36 | 4.75 | -4.48 | -- | 4.31 | -- | -- | -1.12 | -- | 24.84 | 4639 | 10.4 | 0.9 |
| 1176.48 | 1.6 | 4.54 | -- | 0.535 | 6.78 | -- | -- | -0.0349 | 0.923 | 24.7 | 4727 | 10.4 | 0.85 |
| 1313.33 | 1.69 | 5.1 | -7.54 | -- | -- | -- | -- | -2.67 | -- | -- | -- | -- | -- |
| 2807.21 | 2.48 | 4.91 | -- | 0.27 | -- | -- | -- | -1.83 | 10.4 | -- | -- | -- | -- |
| 792.27 | 1.31 | 4.58 | -- | -- | 7.24 | -- | -- | -0.223 | -- | 22.08 | 29082 | 10.6 | 3.82 |
| 2811.67 | 2.48 | 4.91 | -- | -- | -- | -- | -- | -1.83 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 613.87 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 2 | 614.69 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 3 | 614.69 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 4 | 614.80 | radiation | 30 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 19 | 615.03 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 23 | 616.63 | radiation | 40 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 33 | 617.60 | radiation | 40 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 37 | 622.26 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 39 | 622.46 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 46 | 623.01 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 12 |
| 54 | 626.51 | temperature | 15 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 56 | 627.97 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 58 | 628.33 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 60 | 628.57 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 3 |
| 62 | 629.78 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 64 | 629.85 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 3 |
| 68 | 630.15 | radiation | 30 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 92 | 632.44 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 93 | 632.51 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 98 | 633.48 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 99 | 633.48 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 193 | 643.49 | temperature | 15 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 244 | 646.24 | radiation | 10 | 43200 | < th | dose independent | rect. | 16 | 15 |
| 260 | 647.98 | temperature | 15 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 265 | 648.55 | radiation | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 284 | 649.01 | radiation | 10 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 290 | 649.06 | radiation | 10 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 291 | 649.07 | radiation | 10 | 43200 | < th | dose independent | sin | 12 | NA |
| 352 | 652.19 | radiation | 40 | 43200 | < th | dose independent | sin | 13 | NA |
| 377 | 653.33 | temperature | 15 | 43200 | > th | dose independent | rect. | 23 | 13 |
| 390 | 653.90 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 12 |
| 434 | 654.76 | radiation | 20 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 526 | 658.21 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 527 | 658.22 | temperature | 15 | 43200 | > th | dose independent | sin | 9 | NA |
| 589 | 659.68 | temperature | 15 | 43200 | < th | dose independent | sin | 9 | NA |
| 635 | 660.58 | temperature | 15 | 43200 | < th | dose dependent | sin | 10 | NA |
| 687 | 661.56 | radiation | 20 | 43200 | < th | dose dependent | rect. | 19 | 11 |
| 690 | 661.60 | radiation | 20 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 721 | 662.03 | radiation | 20 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 768 | 663.13 | humidity | 90 | 43200 | > th | dose dependent | rect. | 24 | 9 |
| 846 | 664.85 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 20 |
| 861 | 665.27 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 13 |
| 865 | 665.34 | radiation | 40 | 43200 | < th | dose dependent | rect. | 17 | 15 |
| 869 | 665.40 | temperature | 15 | 43200 | > th | dose independent | rect. | 10 | 19 |
| 907 | 665.90 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 16 |