BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0406100 Os03g0406100|Os03g0406100
(247 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G45130.1 | chr2:18606489-18607754 FORWARD LENGTH=246 254 4e-68
AT5G20150.1 | chr5:6802429-6803367 FORWARD LENGTH=257 222 1e-58
AT2G26660.1 | chr2:11338932-11340703 FORWARD LENGTH=288 212 1e-55
AT5G15330.1 | chr5:4980595-4982043 FORWARD LENGTH=319 171 2e-43
AT4G11810.1 | chr4:7105446-7108450 FORWARD LENGTH=708 54 8e-08
AT4G22990.2 | chr4:12048240-12050984 REVERSE LENGTH=701 53 2e-07
>AT2G45130.1 | chr2:18606489-18607754 FORWARD LENGTH=246
Length = 245
Score = 254 bits (648), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 136/242 (56%), Positives = 169/242 (69%), Gaps = 15/242 (6%)
Query: 1 MKFGKRLKRQIEESLPEWRDHFLNYKELKRRLNAVSSPDPAAEARFLALLHAEVDKFNAF 60
MKFGKR+K QI+ESLPEWRD FL YKELK N +SSP P E+ F+ LL+AE+DKFNAF
Sbjct: 1 MKFGKRIKEQIQESLPEWRDKFLRYKELK---NLISSPAPV-ESIFVGLLNAEIDKFNAF 56
Query: 61 FLEQEEDFVIRQRELQERIQ-------SSSSAAAEMEGRVRREVVDLHGEMVLLLNYSSI 113
F+EQEEDF+I +ELQ RIQ + + E +R+++V+ HGEMVLL+NYS+I
Sbjct: 57 FVEQEEDFIIHHKELQYRIQRLVEKCGHNDEMSRENISEIRKDIVNFHGEMVLLVNYSNI 116
Query: 114 NYTGLAKILKKYDKRTGGVLRLPVIAGVLRQPFYATDLLSSLVRDCEAIMDAVFPSLPSP 173
NYTGLAKILKKYDKRT G LR P I VL QPF+ TDL+S LVR+ E MDAV P +
Sbjct: 117 NYTGLAKILKKYDKRTRGGLRSPFIQKVLHQPFFKTDLVSRLVREWETTMDAVDPVKVAE 176
Query: 174 S---XXXXXXXXXXXEQAIFRNTVAALLTMQEVRSGSSTYGHFSLPPMTPLPDSDWLIQS 230
+ + IFRNTVAALLTM+E+R GSSTY FSLPP+ + DSD +++S
Sbjct: 177 AEGYERCAAVTSAAAGEGIFRNTVAALLTMKEMRRGSSTYSAFSLPPLN-ISDSDNVLRS 235
Query: 231 VQ 232
+
Sbjct: 236 LH 237
>AT5G20150.1 | chr5:6802429-6803367 FORWARD LENGTH=257
Length = 256
Score = 222 bits (566), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 155/237 (65%), Gaps = 20/237 (8%)
Query: 1 MKFGKRLKRQIEESLPEWRDHFLNYKELKRRLNAVSSPDP-----------------AAE 43
MKFGK L QIE++LPEW+D FL+YKELK+RL + S E
Sbjct: 1 MKFGKSLSNQIEQTLPEWQDKFLSYKELKKRLKLIGSKTADRPVKRLRLDEFSVGISKEE 60
Query: 44 ARFLALLHAEVDKFNAFFLEQEEDFVIRQRELQERIQSSSSAAAEMEGRVRREVVDLHGE 103
F+ LL E++KFN FF+E+EE+++IR +E ++RI + + +M ++R+E+VD HGE
Sbjct: 61 INFIQLLEDELEKFNNFFVEKEEEYIIRLKEFRDRIAKAKDSMEKM-IKIRKEIVDFHGE 119
Query: 104 MVLLLNYSSINYTGLAKILKKYDKRTGGVLRLPVIAGVLRQPFYATDLLSSLVRDCEAIM 163
MVLL NYS++NYTGL KILKKYDKRTG ++RLP I VL+QPFY TDLL LV++ EA++
Sbjct: 120 MVLLENYSALNYTGLVKILKKYDKRTGDLMRLPFIQKVLQQPFYTTDLLFKLVKESEAML 179
Query: 164 DAVFPSLPSPSX--XXXXXXXXXXEQAIFRNTVAALLTMQEVRSGSSTYGHFSLPPM 218
D +FP+ + S E ++T+AAL ++E+RSGSST FSLPP+
Sbjct: 180 DQIFPANETESEIIQAELSEHKFMESLHMKSTIAALRVLKEIRSGSSTVSVFSLPPL 236
>AT2G26660.1 | chr2:11338932-11340703 FORWARD LENGTH=288
Length = 287
Score = 212 bits (540), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/276 (41%), Positives = 166/276 (60%), Gaps = 51/276 (18%)
Query: 1 MKFGKRLKRQIEESLPEWRDHFLNY------------KELKRRLNAVSSPDPAA------ 42
MKFGK L QIEE+LPEWRD FL+Y + ++ R N S D +
Sbjct: 1 MKFGKSLSNQIEETLPEWRDKFLSYKELKKKLKLMEPRSVENRPNKRSRSDSNSVDTDPT 60
Query: 43 ------EARFLALLHAEVDKFNAFFLEQEEDFVIRQRELQERIQSSSSAAAEMEGRVRRE 96
E F++LL E++KFN+FF+EQEE+++IR +EL++++ + ++ EM +++E
Sbjct: 61 VGMTKEELDFISLLEDELEKFNSFFVEQEEEYIIRLKELKDQVAKAKNSNEEM-INIKKE 119
Query: 97 VVDLHGEMVLLLNYSSINYTGLAKILKKYDKRTGGVLRLPVIAGVLRQPFYATDLLSSLV 156
+VD HGEMVLL+NYS++NYTGLAKILKKYDKRTG ++RLP I VL++PF+ TDLL++ V
Sbjct: 120 IVDFHGEMVLLMNYSALNYTGLAKILKKYDKRTGALIRLPFIQKVLQEPFFTTDLLNTFV 179
Query: 157 RDCEAIMDAVFPSLPS--------PSXXXXXXXXXX----------------XEQAIFRN 192
++CEA++D +FPS S P+ E ++
Sbjct: 180 KECEAMLDRLFPSNKSRNLDEEGEPTTSGMVKTGTDDSELLRVPKELSEIEYMESLYMKS 239
Query: 193 TVAALLTMQEVRSGSSTYGHFSLPPM--TPLPDSDW 226
TV+AL ++E+RSGSST FSLPP+ + L D W
Sbjct: 240 TVSALKVLKEIRSGSSTVSVFSLPPLPASGLEDDSW 275
>AT5G15330.1 | chr5:4980595-4982043 FORWARD LENGTH=319
Length = 318
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/283 (37%), Positives = 149/283 (52%), Gaps = 68/283 (24%)
Query: 1 MKFGKRLKRQIEESLPEWRDHFLNYKELKRRL---------------------------- 32
MKFGK + +EE+LPEWRD FL YK LK+ L
Sbjct: 1 MKFGKEFRTHLEETLPEWRDKFLCYKPLKKLLKYYPYYSADFGPANSDHNDSRPVFADTT 60
Query: 33 NAVSSPDPAA-----------EARFLALLHAEVDKFNAFFLEQEEDFVIRQRELQERIQ- 80
N S+ D + F+ +L+ E++KFN F++++EEDFVIR +EL+ERI+
Sbjct: 61 NISSAADDGGVVPGVRPSEDLQGSFVRILNDELEKFNDFYVDKEEDFVIRLQELKERIEQ 120
Query: 81 --------SSSSAAAEMEGRVRREVVDLHGEMVLLLNYSSINYTGLAKILKKYDKRTGGV 132
+S S +E +RR++V +HGEMVLL NYSS+N+ GL KILKKYDKRTGG+
Sbjct: 121 VKEKNGEFASESEFSEEMMDIRRDLVTIHGEMVLLKNYSSLNFAGLVKILKKYDKRTGGL 180
Query: 133 LRLPVIAGVLRQPFYATDLLSSLVRDCEAIMDAVFPSLP-------------------SP 173
LRLP VL QPF+ T+ L+ LVR+CEA ++ +FPS SP
Sbjct: 181 LRLPFTQLVLHQPFFTTEPLTRLVRECEANLELLFPSEAEVVESSSAVQAHSSSHQHNSP 240
Query: 174 SXXXXXXXXXXXEQ-AIFRNTVAALLTMQEVRSGSSTYGHFSL 215
E I+++T+AA+ ++ ++ SSTY S
Sbjct: 241 RISAETSSTLGNENLDIYKSTLAAMRAIRGLQKASSTYNPLSF 283
>AT4G11810.1 | chr4:7105446-7108450 FORWARD LENGTH=708
Length = 707
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 11/138 (7%)
Query: 1 MKFGKRLKRQIEESLPEWRDHFLNYKELKRRLNA------VSSPDPAAEAR-FLALLHAE 53
+ FGK+LK E S+ EW+++++NYK +K+++ V S D + F +L +
Sbjct: 2 VAFGKKLK---ERSIEEWQEYYINYKLMKKKVKQYGPQIEVGSLDRRHVLKDFSRMLDHQ 58
Query: 54 VDKFNAFFLEQEEDFVIRQRELQERIQSSSSAAAEMEGRVRREVVDLHGEMVL-LLNYSS 112
++K F LEQ+ R ++L+E + + RE G+ +L LL +
Sbjct: 59 IEKIALFMLEQQGLLSSRLQKLREWHDTLQDEPDLSQIAKLREAYRAVGQDLLKLLFFID 118
Query: 113 INYTGLAKILKKYDKRTG 130
+N G+ KILKK+DKR G
Sbjct: 119 MNAIGIRKILKKFDKRFG 136
>AT4G22990.2 | chr4:12048240-12050984 REVERSE LENGTH=701
Length = 700
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 25/145 (17%)
Query: 1 MKFGKRLKRQIEESLPEWRDHFLNYKELKRRLNAVSSPDPAAEAR-------FLALLHAE 53
+ FGK+LK E S+ EW+ +++NYK +K+++ S F +L +
Sbjct: 2 VAFGKKLK---ERSIQEWQGYYINYKLMKKKVKQYSRQLEGGNLERRHVLKDFSRMLDNQ 58
Query: 54 VDKFNAFFLEQEEDFVIRQRELQERIQSSSSAAAEME--------GRVRREVVDLHGEMV 105
++K F LEQ Q L R+Q+ + ++ ++ E + +++
Sbjct: 59 IEKIALFMLEQ-------QGLLASRLQTLRGSHDALQEQPDISHMSYLKEEYRAVGQDLL 111
Query: 106 LLLNYSSINYTGLAKILKKYDKRTG 130
LL + +N G+ KILKK+DKR G
Sbjct: 112 KLLFFVEMNAIGIRKILKKFDKRFG 136
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,739,463
Number of extensions: 172362
Number of successful extensions: 618
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 606
Number of HSP's successfully gapped: 7
Length of query: 247
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 151
Effective length of database: 8,474,633
Effective search space: 1279669583
Effective search space used: 1279669583
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)