FiT-DB / Search/ Help/ Sample detail

Os02g0202200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SPX, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.5 (0.0332) R2 : 0.471
β1 : -0.366 (0.127) R2dD : 0.0104 R2D : 0.0417
β2 : 3.02 (0.206) R2dC : 1.74 R2C : -1.1
β3 : 3.63 (0.285) R2dE : 1.34 R2E : -1.35
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -3.24 (0.363) R2dD*E : 0.103 R2D*E : 0.165
γ1 : 0.069 (0.0735) R2dN8 : 0.00149 R2N8 : -0.00786
σ : 0.617
deviance : 175.69
__
_____
C
peak time of C : 0.0686
E
wheather : temperature
threshold : 37.43
memory length : 566
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.48
open length of G : 6.07

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
174.38 0.62 13.5 -0.223 2.94 3.58 -1.75 -5.31 0.113 0.0637 36.41 566 4.48 6.1
184.88 0.633 13.6 -0.604 3.02 3.51 2.22 -- -0.0169 23.9 36.73 613 3.88 5.88
175.69 0.617 13.5 -0.366 3.02 3.63 -- -3.24 0.069 0.0686 37.43 566 4.48 6.07
205.93 0.668 13.6 -0.55 3 3.78 -- -- 0.0688 0.2 35.71 578 4.92 5.47
269.39 0.764 13.4 0.0273 -- 1.39 -- -2.68 0.195 -- 59.32 1413 4.12 6.63
251.95 0.744 13.6 -0.874 0.573 -- 2.8 -- -0.252 0.0898 -- -- -- --
285.81 0.792 13.6 -0.985 0.563 -- -- -- -0.266 0.261 -- -- -- --
274.84 0.772 13.5 -0.619 -- 1.62 -- -- 0.144 -- 66.89 1408 5.08 6.44
214.08 0.681 13.6 -- 3.04 4.04 -- -- 0.116 0.147 34.52 578 4.83 5.52
305.75 0.817 13.6 -0.966 -- -- -- -- -0.257 -- -- -- -- --
311.39 0.825 13.6 -- 0.549 -- -- -- -0.156 0.165 -- -- -- --
279.93 0.779 13.5 -- -- 1.76 -- -- 0.19 -- 82.84 1420 5.17 6.12
330.39 0.848 13.6 -- -- -- -- -- -0.15 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 189.54 temperature 30 720 < th dose dependent rect. 3 5
3 192.10 temperature 15 720 > th dose dependent rect. 23 12
17 193.69 temperature 10 90 > th dose dependent rect. 3 17
45 196.19 radiation 20 1440 < th dose independent rect. 16 1
74 198.25 temperature 25 720 < th dose dependent rect. 23 10
80 198.44 radiation 20 1440 < th dose independent rect. 16 7
82 198.49 humidity 90 270 < th dose independent rect. 20 3
85 198.52 radiation 20 1440 < th dose independent rect. 16 5
100 198.78 radiation 20 1440 < th dose independent rect. 16 14
103 198.82 temperature 30 270 < th dose dependent rect. 7 8
111 198.99 temperature 20 720 > th dose independent rect. 23 13
132 199.30 temperature 15 720 > th dose dependent sin 7 NA
139 199.43 temperature 20 720 > th dose independent rect. 24 11
146 199.66 humidity 90 90 < th dose independent rect. 20 10
171 200.26 humidity 90 14400 > th dose dependent rect. 6 1
173 200.39 temperature 25 720 < th dose dependent sin 7 NA
182 200.73 temperature 25 270 < th dose independent rect. 7 4
214 201.42 temperature 20 1440 < th dose independent rect. 22 5
220 201.50 temperature 20 1440 > th dose independent rect. 22 5
226 201.58 temperature 20 1440 < th dose independent rect. 22 3
231 201.69 temperature 20 720 < th dose independent rect. 23 12
238 201.75 temperature 20 1440 > th dose independent rect. 22 3
247 201.89 temperature 20 1440 < th dose independent rect. 23 1
256 202.04 temperature 20 720 < th dose independent rect. 2 7
260 202.09 temperature 20 1440 > th dose independent rect. 23 1
282 202.37 radiation 10 1440 > th dose dependent rect. 16 1
318 202.85 humidity 50 14400 > th dose dependent rect. 20 8
323 202.90 humidity 50 14400 > th dose dependent rect. 22 1
328 202.97 temperature 15 90 > th dose independent rect. 20 7
333 203.00 temperature 15 270 > th dose independent rect. 20 3
336 203.06 temperature 20 720 < th dose independent sin 7 NA
339 203.13 temperature 20 720 > th dose independent sin 6 NA
364 203.53 temperature 20 1440 > th dose independent rect. 2 1
367 203.54 temperature 20 1440 > th dose independent rect. 6 1
368 203.54 temperature 20 1440 < th dose independent rect. 1 2
394 203.61 humidity 80 14400 > th dose dependent rect. 20 12
397 203.65 temperature 20 720 < th dose independent rect. 5 2
401 203.70 humidity 80 14400 > th dose dependent rect. 20 5
409 203.81 radiation 40 1440 < th dose independent rect. 15 6
419 203.96 radiation 20 1440 > th dose dependent rect. 15 17
425 204.04 temperature 30 270 < th dose dependent rect. 9 1
433 204.09 temperature 20 1440 > th dose independent rect. 21 10
501 204.52 radiation 40 1440 < th dose dependent rect. 16 5
502 204.52 radiation 40 1440 < th dose dependent rect. 16 7
527 204.65 humidity 90 14400 > th dose dependent rect. 5 10
626 205.04 humidity 50 14400 > th dose dependent rect. 20 13
639 205.10 humidity 70 14400 > th dose dependent sin 10 NA
697 205.36 humidity 90 14400 > th dose dependent rect. 5 6
700 205.39 wind 1 90 > th dose independent rect. 20 7
737 205.56 temperature 20 270 > th dose independent rect. 23 20
738 205.57 atmosphere 995 43200 < th dose independent rect. 21 16
742 205.57 atmosphere 995 43200 < th dose dependent rect. 14 9
750 205.67 atmosphere 1000 43200 < th dose dependent rect. 12 3
756 205.69 atmosphere 1000 43200 < th dose dependent rect. 12 1
858 206.21 atmosphere 995 43200 > th dose independent rect. 20 18
877 206.29 radiation 30 1440 > th dose independent rect. 15 17
916 206.45 temperature 20 1440 > th dose dependent rect. 7 1
920 206.47 atmosphere 995 43200 > th dose independent rect. 22 14
982 206.79 humidity 80 14400 > th dose dependent rect. 2 7