BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0202200 Os02g0202200|AK107245
(280 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G20150.1 | chr5:6802429-6803367 FORWARD LENGTH=257 237 4e-63
AT2G26660.1 | chr2:11338932-11340703 FORWARD LENGTH=288 217 6e-57
AT2G45130.1 | chr2:18606489-18607754 FORWARD LENGTH=246 160 6e-40
AT5G15330.1 | chr5:4980595-4982043 FORWARD LENGTH=319 148 3e-36
AT3G23430.1 | chr3:8387818-8393242 REVERSE LENGTH=783 47 9e-06
>AT5G20150.1 | chr5:6802429-6803367 FORWARD LENGTH=257
Length = 256
Score = 237 bits (605), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 140/284 (49%), Positives = 170/284 (59%), Gaps = 42/284 (14%)
Query: 1 MKFGKSLSSQIVEMQPEWRDNFLSYKDLKKRLNLISGGAAGERASKXXXXXXXXXXXXXX 60
MKFGKSLS+QI + PEW+D FLSYK+LKKRL LI G +R K
Sbjct: 1 MKFGKSLSNQIEQTLPEWQDKFLSYKELKKRLKLI-GSKTADRPVKRLRLDEFSVG---- 55
Query: 61 XXXXXMTLEQAGFVGLLDAXXXXXXXXXXXXXXXYVIKQKELRER---KMASAEEVMRVR 117
++ E+ F+ LL+ Y+I+ KE R+R S E+++++R
Sbjct: 56 -----ISKEEINFIQLLEDELEKFNNFFVEKEEEYIIRLKEFRDRIAKAKDSMEKMIKIR 110
Query: 118 KEIVDLHGEMVLLENYSALNYTGLVKILKKYDKRTGSMIRLPFVQKVLQQPFFTTDLLYK 177
KEIVD HGEMVLLENYSALNYTGLVKILKKYDKRTG ++RLPF+QKVLQQPF+TTDLL+K
Sbjct: 111 KEIVDFHGEMVLLENYSALNYTGLVKILKKYDKRTGDLMRLPFIQKVLQQPFYTTDLLFK 170
Query: 178 LVKECEEMLDQLMPTNEHSVAXXXXXXXXXXXXXXXXXXXXXXANGGAVPGE-AEAEDER 236
LVKE E MLDQ+ P NE + E +E +
Sbjct: 171 LVKESEAMLDQIFPANE--------------------------TESEIIQAELSEHKFME 204
Query: 237 STDMKSTVTAALRALREIRSGSSTVSVFSLPPLHGSNGQDEPGR 280
S MKST+ AALR L+EIRSGSSTVSVFSLPPL NG DE +
Sbjct: 205 SLHMKSTI-AALRVLKEIRSGSSTVSVFSLPPLQ-LNGLDETWK 246
>AT2G26660.1 | chr2:11338932-11340703 FORWARD LENGTH=288
Length = 287
Score = 217 bits (552), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 137/281 (48%), Positives = 169/281 (60%), Gaps = 12/281 (4%)
Query: 1 MKFGKSLSSQIVEMQPEWRDNFLSYKDLKKRLNLISGGAAGERASKXXXXXXXXXXXXXX 60
MKFGKSLS+QI E PEWRD FLSYK+LKK+L L+ + R +K
Sbjct: 1 MKFGKSLSNQIEETLPEWRDKFLSYKELKKKLKLMEPRSVENRPNKRSRSDSNSVDTDPT 60
Query: 61 XXXXXMTLEQAGFVGLLDAXXXXXXXXXXXXXXXYVIKQKELRE---RKMASAEEVMRVR 117
MT E+ F+ LL+ Y+I+ KEL++ + S EE++ ++
Sbjct: 61 VG---MTKEELDFISLLEDELEKFNSFFVEQEEEYIIRLKELKDQVAKAKNSNEEMINIK 117
Query: 118 KEIVDLHGEMVLLENYSALNYTGLVKILKKYDKRTGSMIRLPFVQKVLQQPFFTTDLLYK 177
KEIVD HGEMVLL NYSALNYTGL KILKKYDKRTG++IRLPF+QKVLQ+PFFTTDLL
Sbjct: 118 KEIVDFHGEMVLLMNYSALNYTGLAKILKKYDKRTGALIRLPFIQKVLQEPFFTTDLLNT 177
Query: 178 LVKECEEMLDQLMPTNEHSVAXXXXXXXXXXXXXXXXXXXXXXANGGAVPGE-AEAEDER 236
VKECE MLD+L P+N+ + VP E +E E
Sbjct: 178 FVKECEAMLDRLFPSNKS----RNLDEEGEPTTSGMVKTGTDDSELLRVPKELSEIEYME 233
Query: 237 STDMKSTVTAALRALREIRSGSSTVSVFSLPPLHGSNGQDE 277
S MKSTV +AL+ L+EIRSGSSTVSVFSLPPL S +D+
Sbjct: 234 SLYMKSTV-SALKVLKEIRSGSSTVSVFSLPPLPASGLEDD 273
>AT2G45130.1 | chr2:18606489-18607754 FORWARD LENGTH=246
Length = 245
Score = 160 bits (406), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 110/287 (38%), Positives = 137/287 (47%), Gaps = 67/287 (23%)
Query: 1 MKFGKSLSSQIVEMQPEWRDNFLSYKDLKKRLNLISGGAAGERASKXXXXXXXXXXXXXX 60
MKFGK + QI E PEWRD FL YK+LK NLIS A E
Sbjct: 1 MKFGKRIKEQIQESLPEWRDKFLRYKELK---NLISSPAPVE------------------ 39
Query: 61 XXXXXMTLEQAGFVGLLDAXXXXXXXXXXXXXXXYVIKQKELRERKM-----------AS 109
+ FVGLL+A ++I KEL+ R S
Sbjct: 40 ----------SIFVGLLNAEIDKFNAFFVEQEEDFIIHHKELQYRIQRLVEKCGHNDEMS 89
Query: 110 AEEVMRVRKEIVDLHGEMVLLENYSALNYTGLVKILKKYDKRTGSMIRLPFVQKVLQQPF 169
E + +RK+IV+ HGEMVLL NYS +NYTGL KILKKYDKRT +R PF+QKVL QPF
Sbjct: 90 RENISEIRKDIVNFHGEMVLLVNYSNINYTGLAKILKKYDKRTRGGLRSPFIQKVLHQPF 149
Query: 170 FTTDLLYKLVKECEEMLDQLMPTNEHSVAXXXXXXXXXXXXXXXXXXXXXXANGGAVPGE 229
F TDL+ +LV+E E +D + P A A GE
Sbjct: 150 FKTDLVSRLVREWETTMDAVDPVK----------------VAEAEGYERCAAVTSAAAGE 193
Query: 230 AEAEDERSTDMKSTVTAALRALREIRSGSSTVSVFSLPPLHGSNGQD 276
++TV AAL ++E+R GSST S FSLPPL+ S+ +
Sbjct: 194 G--------IFRNTV-AALLTMKEMRRGSSTYSAFSLPPLNISDSDN 231
>AT5G15330.1 | chr5:4980595-4982043 FORWARD LENGTH=319
Length = 318
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 138/295 (46%), Gaps = 35/295 (11%)
Query: 1 MKFGKSLSSQIVEMQPEWRDNFLSYKDLKKRLNLI-----SGGAAGERASKXXXXXXXXX 55
MKFGK + + E PEWRD FL YK LKK L G A +
Sbjct: 1 MKFGKEFRTHLEETLPEWRDKFLCYKPLKKLLKYYPYYSADFGPANSDHNDSRPVFADTT 60
Query: 56 XXXXXXXXXXMTLE-------QAGFVGLLDAXXXXXXXXXXXXXXXYVIKQKELRER--- 105
+ Q FV +L+ +VI+ +EL+ER
Sbjct: 61 NISSAADDGGVVPGVRPSEDLQGSFVRILNDELEKFNDFYVDKEEDFVIRLQELKERIEQ 120
Query: 106 ------KMAS----AEEVMRVRKEIVDLHGEMVLLENYSALNYTGLVKILKKYDKRTGSM 155
+ AS +EE+M +R+++V +HGEMVLL+NYS+LN+ GLVKILKKYDKRTG +
Sbjct: 121 VKEKNGEFASESEFSEEMMDIRRDLVTIHGEMVLLKNYSSLNFAGLVKILKKYDKRTGGL 180
Query: 156 IRLPFVQKVLQQPFFTTDLLYKLVKECEEMLDQLMPTNEHSVAXXXXXXXXXXXXXXXXX 215
+RLPF Q VL QPFFTT+ L +LV+ECE L+ L P+ V
Sbjct: 181 LRLPFTQLVLHQPFFTTEPLTRLVRECEANLELLFPSEAEVVESSSAVQAHSSSHQH--- 237
Query: 216 XXXXXANGGAVPGEAEAE-DERSTDMKSTVTAALRALREIRSGSSTVSVFSLPPL 269
N + E + + D+ + AA+RA+R ++ SST + S L
Sbjct: 238 ------NSPRISAETSSTLGNENLDIYKSTLAAMRAIRGLQKASSTYNPLSFSSL 286
>AT3G23430.1 | chr3:8387818-8393242 REVERSE LENGTH=783
Length = 782
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 105 RKMASAEEVMRVRKEIVDLHGEMVLLENYSALNYTGLVKILKKYDKRTGSMIRLPFVQKV 164
+ + SAE+ ++R V+L+ + LL+ YS+LN KI+KK+DK G +++ V
Sbjct: 279 KNIQSAEK--KIRSAFVELYRGLGLLKTYSSLNMIAFTKIMKKFDKVAGQNASSTYLKVV 336
Query: 165 LQQPFFTTDLLYKLVKECEEMLDQLMPTNE 194
+ F ++D + +L+ E E + + N+
Sbjct: 337 KRSQFISSDKVVRLMDEVESIFTKHFANND 366
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,414,716
Number of extensions: 132357
Number of successful extensions: 481
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 478
Number of HSP's successfully gapped: 7
Length of query: 280
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 183
Effective length of database: 8,447,217
Effective search space: 1545840711
Effective search space used: 1545840711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 111 (47.4 bits)