BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0202200 Os02g0202200|AK107245
(280 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0202200 SPX, N-terminal domain containing protein 437 e-123
Os06g0603600 Similar to Ids4-like protein 275 3e-74
Os03g0406100 SPX, N-terminal domain containing protein 176 2e-44
Os10g0392600 SPX, N-terminal domain containing protein 174 7e-44
Os03g0827500 SPX, N-terminal domain containing protein 121 5e-28
>Os02g0202200 SPX, N-terminal domain containing protein
Length = 280
Score = 437 bits (1123), Expect = e-123, Method: Compositional matrix adjust.
Identities = 224/280 (80%), Positives = 224/280 (80%)
Query: 1 MKFGKSLSSQIVEMQPEWRDNFLSYKDLKKRLNLISGGAAGERASKXXXXXXXXXXXXXX 60
MKFGKSLSSQIVEMQPEWRDNFLSYKDLKKRLNLISGGAAGERASK
Sbjct: 1 MKFGKSLSSQIVEMQPEWRDNFLSYKDLKKRLNLISGGAAGERASKRRRVGGATAVTVTA 60
Query: 61 XXXXXMTLEQAGFVGLLDAXXXXXXXXXXXXXXXYVIKQKELRERKMASAEEVMRVRKEI 120
MTLEQAGFVGLLDA YVIKQKELRERKMASAEEVMRVRKEI
Sbjct: 61 AAAGGMTLEQAGFVGLLDAELDKFNFFFLEKEEEYVIKQKELRERKMASAEEVMRVRKEI 120
Query: 121 VDLHGEMVLLENYSALNYTGLVKILKKYDKRTGSMIRLPFVQKVLQQPFFTTDLLYKLVK 180
VDLHGEMVLLENYSALNYTGLVKILKKYDKRTGSMIRLPFVQKVLQQPFFTTDLLYKLVK
Sbjct: 121 VDLHGEMVLLENYSALNYTGLVKILKKYDKRTGSMIRLPFVQKVLQQPFFTTDLLYKLVK 180
Query: 181 ECEEMLDQLMPTNEHSVAXXXXXXXXXXXXXXXXXXXXXXANGGAVPGEAEAEDERSTDM 240
ECEEMLDQLMPTNEHSVA ANGGAVPGEAEAEDERSTDM
Sbjct: 181 ECEEMLDQLMPTNEHSVASEDGKDDSEGEEKGSKPSSSSSANGGAVPGEAEAEDERSTDM 240
Query: 241 KSTVTAALRALREIRSGSSTVSVFSLPPLHGSNGQDEPGR 280
KSTVTAALRALREIRSGSSTVSVFSLPPLHGSNGQDEPGR
Sbjct: 241 KSTVTAALRALREIRSGSSTVSVFSLPPLHGSNGQDEPGR 280
>Os06g0603600 Similar to Ids4-like protein
Length = 295
Score = 275 bits (703), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 162/283 (57%), Positives = 184/283 (65%), Gaps = 10/283 (3%)
Query: 1 MKFGKSLSSQIVEMQPEWRDNFLSYKDLKKRLNLISGGAAGE-RASKXXXXXXXXXXXXX 59
MKFGKSLSSQIVE PEWRD FLSYKDLKKRL LI GG GE R +K
Sbjct: 1 MKFGKSLSSQIVETLPEWRDKFLSYKDLKKRLKLIGGGGGGEERQAKRARVAADGGEEEA 60
Query: 60 XXXXXXMTLEQAGFVGLLDAXXXXXXXXXXXXXXXYVIKQKELRERKMASA-----EEVM 114
+AGF+ LL+A Y+I+QKEL++R +A EE+M
Sbjct: 61 AAAAMTPE--EAGFMRLLEAELDKFNSFFVEKEEEYIIRQKELQDRVARAAGRESKEELM 118
Query: 115 RVRKEIVDLHGEMVLLENYSALNYTGLVKILKKYDKRTGSMIRLPFVQKVLQQPFFTTDL 174
RVRKEIVD HGEMVLLENYSALNYTGLVKILKKYDKRTG++IRLPF+QKVLQQPFFTTDL
Sbjct: 119 RVRKEIVDFHGEMVLLENYSALNYTGLVKILKKYDKRTGALIRLPFIQKVLQQPFFTTDL 178
Query: 175 LYKLVKECEEMLDQLMPTNEHSVAXXXXXXXXXXXXXXXXXXXXXXANGGAVPGEAEAED 234
LYKLVK+CE MLDQL+P+NE SV+ NGG +P E E
Sbjct: 179 LYKLVKQCEAMLDQLLPSNELSVS-SEDGRGDSTNEDKPSNPSSSLVNGGTIPELDEIEY 237
Query: 235 ERSTDMKSTVTAALRALREIRSGSSTVSVFSLPPLHGSNGQDE 277
S MK TV AALR+L+EIRSGSSTVS FSLPPL G + +E
Sbjct: 238 MESMYMKGTV-AALRSLKEIRSGSSTVSAFSLPPLQGDSSPEE 279
>Os03g0406100 SPX, N-terminal domain containing protein
Length = 247
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 109/273 (39%), Positives = 143/273 (52%), Gaps = 59/273 (21%)
Query: 1 MKFGKSLSSQIVEMQPEWRDNFLSYKDLKKRLNLISGGAAGERASKXXXXXXXXXXXXXX 60
MKFGK L QI E PEWRD+FL+YK+LK+RLN +S
Sbjct: 1 MKFGKRLKRQIEESLPEWRDHFLNYKELKRRLNAVSSPDPAA------------------ 42
Query: 61 XXXXXMTLEQAGFVGLLDAXXXXXXXXXXXXXXXYVIKQKELRER----KMASAEEVMRV 116
+A F+ LL A +VI+Q+EL+ER A+AE RV
Sbjct: 43 ---------EARFLALLHAEVDKFNAFFLEQEEDFVIRQRELQERIQSSSSAAAEMEGRV 93
Query: 117 RKEIVDLHGEMVLLENYSALNYTGLVKILKKYDKRTGSMIRLPFVQKVLQQPFFTTDLLY 176
R+E+VDLHGEMVLL NYS++NYTGL KILKKYDKRTG ++RLP + VL+QPF+ TDLL
Sbjct: 94 RREVVDLHGEMVLLLNYSSINYTGLAKILKKYDKRTGGVLRLPVIAGVLRQPFYATDLLS 153
Query: 177 KLVKECEEMLDQLMPTNEHSVAXXXXXXXXXXXXXXXXXXXXXXANGGAVPGEAEAEDER 236
LV++CE ++D + P+ + A A
Sbjct: 154 SLVRDCEAIMDAVFPS---------------------------LPSPSAAAAAAARAAAE 186
Query: 237 STDMKSTVTAALRALREIRSGSSTVSVFSLPPL 269
++TV AAL ++E+RSGSST FSLPP+
Sbjct: 187 QAIFRNTV-AALLTMQEVRSGSSTYGHFSLPPM 218
>Os10g0392600 SPX, N-terminal domain containing protein
Length = 277
Score = 174 bits (440), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 113/280 (40%), Positives = 152/280 (54%), Gaps = 48/280 (17%)
Query: 1 MKFGKSLSSQIVEMQPEWRDNFLSYKDLKKRLNLISGGAAGERASKXXXXXXXXXXXXXX 60
MKFGK L Q+ E PEWRD FL+YK LKK + L+S +
Sbjct: 1 MKFGKRLKKQVEESLPEWRDKFLAYKRLKKLVRLVSSSSGDVGGG--------------- 45
Query: 61 XXXXXMTLEQAGFVGLLDAXXXXXXXXXXXXXXXYVIKQKELRE-----------RKMAS 109
+A FV LLD +VI+Q+EL+E + +
Sbjct: 46 ------GGGEAEFVRLLDGEVDRINAFFLEQEEEFVIRQRELQETVEKVAGGGGGGRRPA 99
Query: 110 AEEVMRVRKEIVDLHGEMVLLENYSALNYTGLVKILKKYDKRTGSMIRLPFVQKVLQQPF 169
A E+ RVRKEIVDLHGEMVLL NYSA+NYTGL KILKKYDKRTG ++RLPF++KVL+QPF
Sbjct: 100 AAEMRRVRKEIVDLHGEMVLLLNYSAVNYTGLAKILKKYDKRTGRLLRLPFIEKVLRQPF 159
Query: 170 FTTDLLYKLVKECEEMLDQLMPTNEHSVAXXXXXXXXXXXXXXXXXXXXXXANGGAVPGE 229
FTT+L+ +LV++CE ++ + ++ + A +G A G
Sbjct: 160 FTTELISRLVRDCEATMEAIFTSSVATTA------------MAGDRRTWKGCSGDA--GM 205
Query: 230 AEAEDERSTDMKSTVTAALRALREIRSGSSTVSVFSLPPL 269
A D++ ++TV AAL ++E+RSGSST FSLPP+
Sbjct: 206 APMADQQGI-FRNTV-AALATMKELRSGSSTYGRFSLPPM 243
>Os03g0827500 SPX, N-terminal domain containing protein
Length = 277
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 104/196 (53%), Gaps = 26/196 (13%)
Query: 95 YVIKQKELRER--------------KMASAEEVMRVRKEIVDLHGEMVLLENYSALNYTG 140
YVI+ + L+ER K EE++ +RK V +HGEM+LL+ YS+LN+ G
Sbjct: 46 YVIRLQVLKERIERVKAKKNGAFTSKSEFTEEMLEIRKAFVIIHGEMILLQTYSSLNFAG 105
Query: 141 LVKILKKYDKRTGSMIRLPFVQKVLQQPFFTTDLLYKLVKECEEMLDQLMPTNEHSVAXX 200
LVKILKKYDKRTG ++ LPF Q+ QPFFTT+ L +LV+ECE L+ L P +
Sbjct: 106 LVKILKKYDKRTGGLLSLPFTQRARHQPFFTTEPLTRLVRECEANLELLFPIEAEVLESA 165
Query: 201 XXXXXXXXXXXXXXXXXXXXANGGAVPGEAEAEDERSTDMKSTVTAALRALREIRSGSST 260
+ A A + D ++D+ + AA++A++ +R SST
Sbjct: 166 SSSAKLQPQN-----------DDAASHDPASSVDVETSDVYRSTLAAMKAIQGLRKASST 214
Query: 261 VSVFSLPP-LHGSNGQ 275
+ SL HG +G+
Sbjct: 215 YNPLSLARFFHGEDGE 230
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,886,570
Number of extensions: 198568
Number of successful extensions: 676
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 668
Number of HSP's successfully gapped: 5
Length of query: 280
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 180
Effective length of database: 11,814,401
Effective search space: 2126592180
Effective search space used: 2126592180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 155 (64.3 bits)