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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0392600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SPX, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.09 (0.066) R2 : 0.739
β1 : -6.16 (0.244) R2dD : 0.436 R2D : 0.375
β2 : 1.08 (0.151) R2dC : 0.03 R2C : -0.00057
β3 : -1.84 (0.259) R2dE : 0.0348 R2E : 0.099
β4 : 3.13 (0.584) R2dD*C : 0.017 R2D*C : 0.0168
β5 : 11.4 (0.914) R2dD*E : 0.104 R2D*E : 0.0149
γ1 : -2.26 (0.134) R2dN8 : 0.224 R2N8 : 0.0666
σ : 1.17
deviance : 620.65
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_____
C
peak time of C : 1.34
E
wheather : radiation
threshold : 9.991
memory length : 1433
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15.2
open length of G : 16

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
620.65 1.17 5.09 -6.16 1.08 -1.84 3.13 11.4 -2.26 1.34 9.991 1433 15.2 16
819.04 1.33 5.26 -5.5 0.612 -2.25 3.13 -- -2.25 0.808 9.951 1434 16.4 14.6
638.26 1.18 5.08 -6.24 1.32 -1.95 -- 11.4 -2.28 1.34 9.97 1471 15.2 15.9
791.94 1.31 5.26 -4.79 1.77 -4.08 -- -- -2.27 0.52 9.978 1464 16.4 13.8
729.5 1.26 5.08 -6.08 -- -2.02 -- 11.4 -2.26 -- 9.978 1429 15.3 15.9
921.88 1.42 5.34 -6.54 0.934 -- 3.12 -- -2.37 1.42 -- -- -- --
960.91 1.45 5.35 -6.64 0.941 -- -- -- -2.39 1.76 -- -- -- --
820.08 1.33 5.26 -4.77 -- -3.38 -- -- -2.38 -- 9.589 7092 16.5 14
777.04 1.3 5.07 -- 1.27 -4.36 -- -- -0.809 0.968 9.943 25922 17.5 12.9
1014.67 1.49 5.34 -6.61 -- -- -- -- -2.37 -- -- -- -- --
2124.42 2.16 5.18 -- 0.821 -- -- -- -1.65 1.53 -- -- -- --
774.06 1.3 5.07 -- -- -4.64 -- -- -0.766 -- 10 25889 17.4 12.8
2165.75 2.17 5.17 -- -- -- -- -- -1.63 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 565.24 radiation 40 14400 < th dose independent rect. 6 2
2 566.82 radiation 40 14400 < th dose independent rect. 19 13
3 567.98 radiation 40 14400 < th dose independent rect. 21 11
18 598.99 radiation 30 43200 > th dose dependent rect. 7 1
49 600.79 radiation 20 43200 > th dose independent rect. 6 1
95 610.91 temperature 15 43200 < th dose dependent rect. 2 1
111 612.74 temperature 15 43200 < th dose independent rect. 24 1
115 614.58 radiation 40 43200 < th dose independent rect. 15 8
117 614.72 radiation 40 43200 < th dose independent rect. 15 5
127 614.99 radiation 40 43200 < th dose independent rect. 15 13
148 616.11 temperature 15 43200 < th dose independent rect. 22 4
150 616.11 radiation 40 43200 < th dose dependent rect. 7 1
152 616.15 radiation 1 43200 > th dose dependent rect. 7 1
157 616.54 temperature 15 43200 > th dose independent rect. 1 1
181 617.39 temperature 15 43200 > th dose independent rect. 1 3
193 618.54 temperature 15 43200 > th dose independent rect. 22 6
213 619.32 temperature 15 43200 > th dose independent rect. 10 1
219 619.46 temperature 15 43200 < th dose independent rect. 10 1
239 619.83 temperature 15 43200 > th dose independent rect. 10 18
241 620.02 temperature 15 43200 < th dose independent rect. 10 18
244 620.11 temperature 15 43200 > th dose independent rect. 10 4
247 620.29 temperature 15 43200 > th dose independent rect. 17 11
262 620.66 radiation 40 43200 < th dose dependent rect. 19 13
263 620.68 radiation 40 43200 < th dose dependent rect. 4 4
264 620.70 radiation 40 43200 < th dose dependent rect. 21 11
280 620.76 temperature 15 43200 < th dose independent rect. 13 15
292 620.87 temperature 15 43200 > th dose independent rect. 13 15
301 621.13 temperature 15 43200 < th dose independent rect. 21 10
306 621.21 temperature 15 43200 < th dose independent rect. 22 16
311 621.27 temperature 15 43200 < th dose independent sin 12 NA
348 621.51 temperature 15 43200 < th dose independent rect. 22 14
357 621.63 temperature 15 43200 < th dose independent rect. 18 13
359 621.64 temperature 15 43200 < th dose independent rect. 24 14
365 621.66 temperature 15 43200 < th dose independent rect. 10 21
383 621.82 temperature 15 43200 < th dose independent rect. 10 4
393 621.96 temperature 15 43200 < th dose independent rect. 6 22
403 622.09 temperature 15 43200 < th dose independent rect. 24 12
437 622.34 temperature 15 43200 < th dose independent rect. 24 7
472 622.57 temperature 15 43200 < th dose independent rect. 13 18
500 622.76 temperature 15 43200 > th dose independent rect. 22 1
556 623.13 radiation 10 43200 < th dose independent rect. 18 17
560 623.15 atmosphere 1015 43200 < th dose independent rect. 16 4
572 623.24 temperature 15 43200 < th dose independent rect. 13 23
604 623.49 temperature 15 43200 < th dose independent no NA NA
619 623.63 temperature 15 43200 < th dose independent rect. 24 23
622 623.67 radiation 1 43200 > th dose independent rect. 10 1
645 623.96 temperature 15 43200 > th dose independent sin 15 NA
662 624.13 radiation 1 43200 < th dose independent rect. 10 1
663 624.13 radiation 1 43200 < th dose dependent rect. 10 1
676 624.39 temperature 15 43200 < th dose dependent sin 9 NA
692 624.58 radiation 10 43200 < th dose independent rect. 4 7
694 624.58 radiation 10 43200 < th dose independent rect. 21 14
782 625.49 temperature 15 43200 > th dose independent rect. 22 22
812 625.80 temperature 15 43200 > th dose independent rect. 21 18
816 625.81 radiation 10 1440 < th dose independent rect. 15 16
856 626.08 radiation 10 43200 < th dose independent rect. 7 3
858 626.08 temperature 15 43200 > th dose independent rect. 17 22
861 626.10 radiation 10 43200 < th dose independent sin 8 NA
919 626.45 temperature 15 43200 > th dose independent rect. 13 23
922 626.47 temperature 15 43200 > th dose independent no NA NA
933 626.55 temperature 15 43200 > th dose independent rect. 24 23
936 626.57 radiation 40 43200 > th dose dependent rect. 13 20
965 626.68 atmosphere 1015 43200 > th dose independent rect. 18 2