BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0321300 Os03g0321300|AK071172
(384 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0321300 Cyclin-like F-box domain containing protein 616 e-176
Os05g0490300 Cyclin-like F-box domain containing protein 398 e-111
Os01g0812200 Cyclin-like F-box domain containing protein 373 e-103
Os05g0510400 Cyclin-like F-box domain containing protein 295 5e-80
Os01g0770400 Cyclin-like F-box domain containing protein 278 5e-75
>Os03g0321300 Cyclin-like F-box domain containing protein
Length = 384
Score = 616 bits (1588), Expect = e-176, Method: Compositional matrix adjust.
Identities = 321/384 (83%), Positives = 321/384 (83%)
Query: 1 MQSRHRVFAEDLLLPREAEGEDHFDRVPDSLVLLIFNRLADARSLGRCSAVSKRFNSLVP 60
MQSRHRVFAEDLLLPREAEGEDHFDRVPDSLVLLIFNRLADARSLGRCSAVSKRFNSLVP
Sbjct: 1 MQSRHRVFAEDLLLPREAEGEDHFDRVPDSLVLLIFNRLADARSLGRCSAVSKRFNSLVP 60
Query: 61 LVDDACLRIDRVITXXXXXXXXXXXXXPRPAGRGVLSHLLKAMLLAVLKPFXXXXXXXXX 120
LVDDACLRIDRVIT PRPAGRGVLSHLLKAMLLAVLKPF
Sbjct: 61 LVDDACLRIDRVITDAADADDALGLAGPRPAGRGVLSHLLKAMLLAVLKPFGHCDAGVRG 120
Query: 121 XXXXXXXXXXXXXXXXXXAQQHHSPAQVLKNFSSIRNLRMELPVSDVGTDDGVLLRWKAV 180
AQQHHSPAQVLKNFSSIRNLRMELPVSDVGTDDGVLLRWKAV
Sbjct: 121 GGGGERAGKHGGGGGGCGAQQHHSPAQVLKNFSSIRNLRMELPVSDVGTDDGVLLRWKAV 180
Query: 181 FGSTLQSCVILGGTRVDRXXXXXXXXXXXXXXGDSEASQGDDTGSIPESFYTNGGLKLRV 240
FGSTLQSCVILGGTRVDR GDSEASQGDDTGSIPESFYTNGGLKLRV
Sbjct: 181 FGSTLQSCVILGGTRVDRAAAPAAAAATATAAGDSEASQGDDTGSIPESFYTNGGLKLRV 240
Query: 241 VWTISSLIAAATRHYLLREIVKEHPTLERVALTDAHGQGTLSMGRDQIREFRDKPLAAAA 300
VWTISSLIAAATRHYLLREIVKEHPTLERVALTDAHGQGTLSMGRDQIREFRDKPLAAAA
Sbjct: 241 VWTISSLIAAATRHYLLREIVKEHPTLERVALTDAHGQGTLSMGRDQIREFRDKPLAAAA 300
Query: 301 AANRTQVPACNMKLRYAPMLELSDGTRIQGATLVVIKPVXXXXXXXXXRKELDEFVADAF 360
AANRTQVPACNMKLRYAPMLELSDGTRIQGATLVVIKPV RKELDEFVADAF
Sbjct: 301 AANRTQVPACNMKLRYAPMLELSDGTRIQGATLVVIKPVGEAGGIGGGRKELDEFVADAF 360
Query: 361 DGPYREAVSALSKRRTYLLEMNGF 384
DGPYREAVSALSKRRTYLLEMNGF
Sbjct: 361 DGPYREAVSALSKRRTYLLEMNGF 384
>Os05g0490300 Cyclin-like F-box domain containing protein
Length = 450
Score = 398 bits (1023), Expect = e-111, Method: Compositional matrix adjust.
Identities = 207/364 (56%), Positives = 245/364 (67%), Gaps = 26/364 (7%)
Query: 22 DHFDRVPDSLVLLIFNRLADARSLGRCSAVSKRFNSLVPLVDDACLRIDRVITXXXXXXX 81
D FDR+PDSLVL+I N + D RSLGRCSAVSKRF LVPLV D ++IDRV+T
Sbjct: 112 DQFDRLPDSLVLVILNNVEDVRSLGRCSAVSKRFYGLVPLVHDVYVKIDRVVTVDGEAED 171
Query: 82 XXXXXXPRPAGRGVLSHLLKAMLLAVLKPFXXXXXXXXXXXXXXXXXXXXXXXXXXXAQQ 141
P+P R +LSH LK ML ++KPF
Sbjct: 172 ALNLSSPKP--RNILSHFLKMMLFTIIKPFHSMRGPNGAGRPLFPQLA------------ 217
Query: 142 HHSPAQVLKNFSSIRNLRMELPVSDVGTDDGVLLRWKAVFGSTLQSCVILGGTRVDRXXX 201
HSPAQVL+NF+ IRNLR+ELP DVGT++GVLL+W+A +GSTLQ+CVILGGT+VDR
Sbjct: 218 QHSPAQVLRNFTHIRNLRVELPSGDVGTEEGVLLKWRAEYGSTLQNCVILGGTQVDRKPV 277
Query: 202 XXXXXXXXXXXGDSEASQGDDTGSIPESFYTNGGLKLRVVWTISSLIAAATRHYLLREIV 261
G +D GS+PESFYTNGGLKLRVVWTISSLIAA+TRHYLLR I+
Sbjct: 278 -----------GAEHELYSEDNGSMPESFYTNGGLKLRVVWTISSLIAASTRHYLLRSII 326
Query: 262 KEHPTLERVALTDAHGQGTLSMGRDQIREFRDKPLAAAAAANRTQVPACNMKLRYAPMLE 321
K+HPTL + LTDA GQGTLSMG +Q++EFR+ L+A+A +NRTQVPACNMKL+YAP LE
Sbjct: 327 KDHPTLTSLVLTDADGQGTLSMGAEQLKEFRENQLSASACSNRTQVPACNMKLKYAPYLE 386
Query: 322 LSDGTRIQGATLVVIKPV-XXXXXXXXXRKELDEFVADAFDGPYREAVSALSKRRTYLLE 380
L G +QGATLV IKP RKE D FV+ AFDGP++ AV AL KRRTYLLE
Sbjct: 387 LPGGIALQGATLVAIKPSPEGSNGGHTSRKETDAFVSGAFDGPFKFAVKALMKRRTYLLE 446
Query: 381 MNGF 384
MNGF
Sbjct: 447 MNGF 450
>Os01g0812200 Cyclin-like F-box domain containing protein
Length = 353
Score = 373 bits (958), Expect = e-103, Method: Compositional matrix adjust.
Identities = 201/385 (52%), Positives = 243/385 (63%), Gaps = 33/385 (8%)
Query: 1 MQSRHRVFAEDLLLPREAEGEDHFDRVPDSLVLLIFNRLADARSLGRCSAVSKRFNSLVP 60
M R R+ A+ A D FD +PD +VLLI N+L D RSLGRC+AVSKRF+ LVP
Sbjct: 1 MHPRARIHAD------PAPEFDQFDCLPDPVVLLILNKLEDVRSLGRCAAVSKRFSGLVP 54
Query: 61 LVDDACLRIDRVITXXXXXXXXXXXXXPRPAGRGVLSHLLKAMLLAVLKPFXXXXXXXXX 120
LV D ++IDRV+ +P + + SH K ML ++KPF
Sbjct: 55 LVSDVYVKIDRVVATDGDADDALNLSSAKP--KNIFSHFFKLMLFTIVKPFHSMRNLNGT 112
Query: 121 XXXXXXXXXXXXXXXXXXAQQHHSPAQVLKNFSSIRNLRMELPVSDVGTDDGVLLRWKAV 180
HSP VL+NFS + NLR+ELP DVGT++GVLL+W+A
Sbjct: 113 GRPLFPLA-------------QHSPVHVLRNFSDVWNLRVELPSGDVGTEEGVLLKWRAE 159
Query: 181 FGSTLQSCVILGGTRVDRXXXXXXXXXXXXXXGDSEASQGDDTGSIPESFYTNGGLKLRV 240
+GSTL++CVILGGT VDR G S +D GS+PESFYTNGGLKLRV
Sbjct: 160 YGSTLRNCVILGGTLVDRKPI-----------GAEHESSVEDNGSMPESFYTNGGLKLRV 208
Query: 241 VWTISSLIAAATRHYLLREIVKEHPTLERVALTDAHGQGTLSMGRDQIREFRDKPLAAAA 300
VWTISSLIAA+TRHYLLR I+K+HPTL + L DA GQGTL MG +Q+REFR+ L+A+A
Sbjct: 209 VWTISSLIAASTRHYLLRSIIKDHPTLRSLVLADADGQGTLYMGMEQLREFRENKLSASA 268
Query: 301 AANRTQVPACNMKLRYAPMLELSDGTRIQGATLVVIKPVX-XXXXXXXXRKELDEFVADA 359
+NRTQVPACNMKL+YAP LEL G +QGATLVVIKP RKE + FV+ A
Sbjct: 269 CSNRTQVPACNMKLKYAPYLELPGGMTLQGATLVVIKPSNDGGSGGHSSRKETEAFVSSA 328
Query: 360 FDGPYREAVSALSKRRTYLLEMNGF 384
FD P+R AV AL KRRTYLLEMNGF
Sbjct: 329 FDEPFRFAVKALMKRRTYLLEMNGF 353
>Os05g0510400 Cyclin-like F-box domain containing protein
Length = 412
Score = 295 bits (754), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 165/389 (42%), Positives = 220/389 (56%), Gaps = 31/389 (7%)
Query: 20 GEDHFDRVPDSLVLLIFNRLADARSLGRCSAVSKRFNSLVPLVDDACLRIDRVITXXXXX 79
G+DHFDR+PD L+L+IFNR+ D ++LGRCS VS+RF+ LVPLVD +R+D VI
Sbjct: 31 GDDHFDRLPDPLLLVIFNRIGDVKALGRCSLVSRRFHDLVPLVDSVLVRVDCVIPDDPAS 90
Query: 80 XXXXXXXXPRPA--------GRGVLSHLLKAMLLAVLKPFXXXXXXXXXXXXXXXXXXXX 131
R V S + + +L ++KP
Sbjct: 91 SSSSSSSPSAAPSSPTASARARTVFSQIARIVLGGIVKPIQALGQILSPANSASVLAASV 150
Query: 132 XXXXXXXAQ------------QHHSPAQVLKNFSSIRNLRMELPVSDVGTDDGVLLRWKA 179
+ HHSP++VL++F +R LR+ELP ++ ++GVLL+WKA
Sbjct: 151 TSSPSSSSSSSSSSPPLPGDVSHHSPSEVLRSFKELRRLRIELPAGELSMEEGVLLKWKA 210
Query: 180 VFGSTLQSCVILGGTRVDRXXXXXXXXXXXXXXGDSEASQGDDTGSIPESFYTNGGLKLR 239
FGSTL SCVILG + + + + D+TGSIPESFYTNGGLKLR
Sbjct: 211 DFGSTLGSCVILGASSAGKDGGAGAAPAV-------DCGESDETGSIPESFYTNGGLKLR 263
Query: 240 VVWTISSLIAAATRHYLLREIVKEHPTLERVALTDAHGQGTLSMGRDQIREFRDKPLAAA 299
VVWTISSLIAA+ RHYLL+ I+ +H TLE + LTDA GQG L+M + Q++E R KP++A+
Sbjct: 264 VVWTISSLIAASARHYLLQPIIADHTTLESLDLTDADGQGVLTMDKWQLQELRVKPVSAS 323
Query: 300 AAANRTQVPACNMKLRYAPMLELSDGTRIQGATLVVIKPVXXXXXXXXXRKELDE----F 355
++RT +PA +M+L YAP +EL G + GATLV IKP +
Sbjct: 324 GGSHRTLMPALSMRLWYAPHIELPGGLVLNGATLVAIKPTEEATRDTVGSGIAGSAGGCW 383
Query: 356 VADAFDGPYREAVSALSKRRTYLLEMNGF 384
V+DAF+ PYR AV L KRRTY LEMN F
Sbjct: 384 VSDAFEEPYRTAVGMLLKRRTYSLEMNSF 412
>Os01g0770400 Cyclin-like F-box domain containing protein
Length = 396
Score = 278 bits (711), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 160/383 (41%), Positives = 221/383 (57%), Gaps = 20/383 (5%)
Query: 22 DHFDRVPDSLVLLIFNRLADARSLGRCSAVSKRFNSLVPLVDDACLRIDRVIT------- 74
D F+R+PD ++L +F R+ D ++LGRC+ VS+RF++LVPLVD +R+D VI+
Sbjct: 14 DQFERLPDEVLLDVFGRIGDVKALGRCALVSRRFHALVPLVDSVFVRVDCVISDDPPPSS 73
Query: 75 -XXXXXXXXXXXXXPRPAGRGVLSHLLKAMLLAVLKPFXXXXXXXXXXXXXXXXXXXXXX 133
P GRG L+HL + +L +++P
Sbjct: 74 AGSAQAAAAAEGGPPAARGRGALAHLARLVLGGIVRPIQALGQILSPAAATVSRRSAAPP 133
Query: 134 XXXXXAQ---QHHSPAQVLKNFSSIRNLRMELPVSDVGTDDGVLLRWKAVFGSTLQSCVI 190
A HHSP++VL++F +R L +ELP ++G +DGVLL+WKA FGSTL SCVI
Sbjct: 134 AAPAPAAADVSHHSPSEVLRSFKELRRLHIELPTGELGIEDGVLLKWKADFGSTLGSCVI 193
Query: 191 LGGTRVDRXXXXXXXXXXXXXXGDSEAS-----QGDDTGSIPESFYTNGGLKLRVVWTIS 245
LG + V S AS + D+ G+IPES YTNGGLKLRVVWTIS
Sbjct: 194 LGASSVTSKPPPPPAAPPPTAADSSAASPDSSREPDELGNIPESLYTNGGLKLRVVWTIS 253
Query: 246 SLIAAATRHYLLREIVKEHPTLERVALTDAHGQGTLSMGRDQIREFRDKPLAAAAAANRT 305
SLIAA+ RHYLL+ I+ +H TLE + LTDA GQG L+M + Q++E R +P++A+ ++RT
Sbjct: 254 SLIAASARHYLLQPIIADHSTLESLDLTDADGQGVLTMDKRQLQELRVRPVSASGNSHRT 313
Query: 306 QVPACNMKLRYAPMLELSDGTRIQGATLVVIKP----VXXXXXXXXXRKELDEFVADAFD 361
+PA +M+L YAP +EL G ++GATLV I+P + ++ DAF+
Sbjct: 314 LMPALSMRLWYAPHIELPGGQLLKGATLVAIRPSEDVLREGGGIEVAGPTGASWILDAFE 373
Query: 362 GPYREAVSALSKRRTYLLEMNGF 384
PYR A L KRRTY LEMN F
Sbjct: 374 EPYRTAAQVLLKRRTYSLEMNSF 396
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,935,265
Number of extensions: 385463
Number of successful extensions: 798
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 785
Number of HSP's successfully gapped: 8
Length of query: 384
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 281
Effective length of database: 11,657,759
Effective search space: 3275830279
Effective search space used: 3275830279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)