BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0320100 Os03g0320100|AK062471
(273 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0320100 Alpha-L-arabinofuranosidase, C-terminal domain... 533 e-152
Os07g0686900 Similar to Alpha-L-arabinofuranosidase 391 e-109
Os12g0128800 Similar to Arabinoxylan arabinofuranohydrolase... 289 2e-78
Os12g0128700 Similar to Arabinoxylan arabinofuranohydrolase... 281 4e-76
Os11g0131900 Similar to Arabinoxylan arabinofuranohydrolase... 280 7e-76
Os11g0132600 Similar to Arabinoxylan arabinofuranohydrolase... 280 1e-75
>Os03g0320100 Alpha-L-arabinofuranosidase, C-terminal domain containing protein
Length = 273
Score = 533 bits (1373), Expect = e-152, Method: Compositional matrix adjust.
Identities = 260/273 (95%), Positives = 260/273 (95%)
Query: 1 AIKASYPDXXXXXXXXXXXXXAVNPADLYDVHVYTSSGDMFSKTRMFDSTPRSGPKAFVS 60
AIKASYPD AVNPADLYDVHVYTSSGDMFSKTRMFDSTPRSGPKAFVS
Sbjct: 1 AIKASYPDIKIISSCDISSISAVNPADLYDVHVYTSSGDMFSKTRMFDSTPRSGPKAFVS 60
Query: 61 EYAVTGNDAGRGTLVAALAEAAFLIGLERNSDVVEMASCAPLFINDNDRGFSPDAIVFNS 120
EYAVTGNDAGRGTLVAALAEAAFLIGLERNSDVVEMASCAPLFINDNDRGFSPDAIVFNS
Sbjct: 61 EYAVTGNDAGRGTLVAALAEAAFLIGLERNSDVVEMASCAPLFINDNDRGFSPDAIVFNS 120
Query: 121 WQHYGCPNYWMLHFFKDSSGATLHPLTIQVSNYDQLAASALTWQNSNDGNTYLKIKVVNF 180
WQHYGCPNYWMLHFFKDSSGATLHPLTIQVSNYDQLAASALTWQNSNDGNTYLKIKVVNF
Sbjct: 121 WQHYGCPNYWMLHFFKDSSGATLHPLTIQVSNYDQLAASALTWQNSNDGNTYLKIKVVNF 180
Query: 181 GNKAVNLNIAVAGLENGIQEFGSIKTVLTSGWLRDENSFQQPDKVVPAASPITNAGEKMG 240
GNKAVNLNIAVAGLENGIQEFGSIKTVLTSGWLRDENSFQQPDKVVPAASPITNAGEKMG
Sbjct: 181 GNKAVNLNIAVAGLENGIQEFGSIKTVLTSGWLRDENSFQQPDKVVPAASPITNAGEKMG 240
Query: 241 VIVDPYSLTSFDLLLDTNTDKYPLLESSFHSSM 273
VIVDPYSLTSFDLLLDTNTDKYPLLESSFHSSM
Sbjct: 241 VIVDPYSLTSFDLLLDTNTDKYPLLESSFHSSM 273
>Os07g0686900 Similar to Alpha-L-arabinofuranosidase
Length = 424
Score = 391 bits (1004), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/255 (74%), Positives = 213/255 (83%)
Query: 1 AIKASYPDXXXXXXXXXXXXXAVNPADLYDVHVYTSSGDMFSKTRMFDSTPRSGPKAFVS 60
AIKA+YPD NPADLYDVHVYTSS DMFS+T MFD+T RSGPKA VS
Sbjct: 162 AIKAAYPDINVVSSCDKSTISPSNPADLYDVHVYTSSSDMFSRTSMFDNTTRSGPKAIVS 221
Query: 61 EYAVTGNDAGRGTLVAALAEAAFLIGLERNSDVVEMASCAPLFINDNDRGFSPDAIVFNS 120
EYAVTG DAG+GTLV ALAEAAFL+GLERNSDVVEMASCAPLF+NDNDR +SPDAIVFNS
Sbjct: 222 EYAVTGKDAGKGTLVEALAEAAFLVGLERNSDVVEMASCAPLFVNDNDRRWSPDAIVFNS 281
Query: 121 WQHYGCPNYWMLHFFKDSSGATLHPLTIQVSNYDQLAASALTWQNSNDGNTYLKIKVVNF 180
WQ+YGCPNYWMLHFFKDS GAT HP IQ+S+Y+QL ASA+TWQNS D +TYLKIK+VNF
Sbjct: 282 WQNYGCPNYWMLHFFKDSCGATFHPSNIQISSYNQLVASAITWQNSKDKSTYLKIKLVNF 341
Query: 181 GNKAVNLNIAVAGLENGIQEFGSIKTVLTSGWLRDENSFQQPDKVVPAASPITNAGEKMG 240
GN+AVNL+I+V+GL+ GI+ GS KTVLTS DENSFQQP KV P +SP+ NA E+MG
Sbjct: 342 GNQAVNLSISVSGLDEGIKSSGSKKTVLTSSGPLDENSFQQPQKVAPVSSPVDNANEQMG 401
Query: 241 VIVDPYSLTSFDLLL 255
V+VDPYSLTSFDLLL
Sbjct: 402 VLVDPYSLTSFDLLL 416
>Os12g0128800 Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I
Length = 571
Score = 289 bits (739), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 146/255 (57%), Positives = 184/255 (72%), Gaps = 2/255 (0%)
Query: 1 AIKASYPDXXXXXXXXXXXXXAVNPADLYDVHVYTSSGDMFSKTRMFDSTPRSGPKAFVS 60
AIK +YPD +PADLYD H+Y ++ +F K FD T R+GPK FVS
Sbjct: 318 AIKEAYPDIQIISNCDGSSGPLDHPADLYDYHIYENASTVFFKKNEFDRTSRNGPKVFVS 377
Query: 61 EYAVTGNDAGRGTLVAALAEAAFLIGLERNSDVVEMASCAPLFINDNDRGFSPDAIVFNS 120
EYAV G DAG G+L+A+LAEAAFLIGLE+NSDVV+MA APLF+NDNDR ++PDAIVFNS
Sbjct: 378 EYAVNGEDAGNGSLLASLAEAAFLIGLEKNSDVVQMACYAPLFVNDNDRVWNPDAIVFNS 437
Query: 121 WQHYGCPNYWMLHFFKDSSGATLHPLTIQVSNYDQLAASALTWQNSNDGNTYLKIKVVNF 180
WQ YG P+YWM +F++SSGA +HP+ I S D LAASA+TWQ++ NT+L++K+VNF
Sbjct: 438 WQQYGTPSYWMQTYFRESSGAMIHPIMISSSYSDLLAASAITWQDAE--NTFLRVKIVNF 495
Query: 181 GNKAVNLNIAVAGLENGIQEFGSIKTVLTSGWLRDENSFQQPDKVVPAASPITNAGEKMG 240
G AVNL I+ +GL+ G+ S TVLTS L DENSF +P+KVVP AS + NA E+M
Sbjct: 496 GPNAVNLTISSSGLQAGVDTAKSTVTVLTSSNLLDENSFSEPNKVVPVASELPNAAEQMQ 555
Query: 241 VIVDPYSLTSFDLLL 255
V+ PYS+ SFDL L
Sbjct: 556 VLHFPYSICSFDLAL 570
>Os12g0128700 Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II
Length = 660
Score = 281 bits (718), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 139/255 (54%), Positives = 182/255 (71%), Gaps = 2/255 (0%)
Query: 1 AIKASYPDXXXXXXXXXXXXXAVNPADLYDVHVYTSSGDMFSKTRMFDSTPRSGPKAFVS 60
AI+ +YPD +PADLYD HVYT S +FS FD + R+GPKAFVS
Sbjct: 399 AIREAYPDIQMISNCDASSRPLDHPADLYDFHVYTDSKTLFSMKSAFDRSSRNGPKAFVS 458
Query: 61 EYAVTGNDAGRGTLVAALAEAAFLIGLERNSDVVEMASCAPLFINDNDRGFSPDAIVFNS 120
EYAV +DAGRG+L+A+LAEAAFL GLE+NSDVV+MAS APLF+N+ND+ ++PDAIVFNS
Sbjct: 459 EYAVWRSDAGRGSLLASLAEAAFLTGLEKNSDVVQMASYAPLFVNNNDQTWNPDAIVFNS 518
Query: 121 WQHYGCPNYWMLHFFKDSSGATLHPLTIQVSNYDQLAASALTWQNSNDGNTYLKIKVVNF 180
WQ YG P+YWM F++SSGA HP+TI S LAASA+TWQ+S N++L++K++NF
Sbjct: 519 WQQYGTPSYWMQTLFRESSGAMFHPITITSSYSGSLAASAITWQDSE--NSFLRVKIINF 576
Query: 181 GNKAVNLNIAVAGLENGIQEFGSIKTVLTSGWLRDENSFQQPDKVVPAASPITNAGEKMG 240
G+ V+L I+ GL+ + GS TV+TS + DENSF P+KVVP S ++NA E+M
Sbjct: 577 GSDPVSLTISATGLQARVNALGSTATVITSSNVMDENSFSNPNKVVPVKSQLSNAAEQMQ 636
Query: 241 VIVDPYSLTSFDLLL 255
V + P+S +SFDL L
Sbjct: 637 VTLAPHSFSSFDLAL 651
>Os11g0131900 Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II
Length = 658
Score = 280 bits (717), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 140/255 (54%), Positives = 181/255 (70%), Gaps = 2/255 (0%)
Query: 1 AIKASYPDXXXXXXXXXXXXXAVNPADLYDVHVYTSSGDMFSKTRMFDSTPRSGPKAFVS 60
AI+ +YPD +PADLYD HVYT S +FS FD + R+GPKAFVS
Sbjct: 397 AIREAYPDIQMISNCDASSSPLDHPADLYDFHVYTDSKTLFSMKNTFDRSSRNGPKAFVS 456
Query: 61 EYAVTGNDAGRGTLVAALAEAAFLIGLERNSDVVEMASCAPLFINDNDRGFSPDAIVFNS 120
EYAV +DAGRG+L+A+LAEAAFL GLE+NSDVV+MAS APLF+N+ND+ ++PDAIVFNS
Sbjct: 457 EYAVWRSDAGRGSLLASLAEAAFLTGLEKNSDVVQMASYAPLFVNNNDQTWNPDAIVFNS 516
Query: 121 WQHYGCPNYWMLHFFKDSSGATLHPLTIQVSNYDQLAASALTWQNSNDGNTYLKIKVVNF 180
WQ YG P+YWM F +SSGA HP+TI S LAASA+TWQ+S N++L++K++NF
Sbjct: 517 WQQYGTPSYWMQTLFGESSGAMFHPVTITSSYSGSLAASAITWQDSE--NSFLRVKIINF 574
Query: 181 GNKAVNLNIAVAGLENGIQEFGSIKTVLTSGWLRDENSFQQPDKVVPAASPITNAGEKMG 240
G+ V+L I+ GL+ + GS TVLTS + DENSF P+KVVP S ++NA E+M
Sbjct: 575 GSDPVSLTISATGLQARVNALGSTATVLTSSNVMDENSFSNPNKVVPVKSQLSNAAEQMQ 634
Query: 241 VIVDPYSLTSFDLLL 255
V + P+S +SFDL L
Sbjct: 635 VTLAPHSFSSFDLAL 649
>Os11g0132600 Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II
Length = 657
Score = 280 bits (715), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 143/257 (55%), Positives = 183/257 (71%), Gaps = 3/257 (1%)
Query: 1 AIKASYPDXXXXXXXXXXXXXAVNPADLYDVHVYTSSGDMFSKTRMFDSTPRSGPKAFVS 60
AI+ +YPD +PADLYD HVYTS+ ++F FD T R G K FVS
Sbjct: 394 AIRKAYPDIQMISNCDGSSRPLDHPADLYDFHVYTSAANLFIMKNKFDRTSRIGSKVFVS 453
Query: 61 EYAVT-GNDAGRGTLVAALAEAAFLIGLERNSDVVEMASCAPLFINDNDRGFSPDAIVFN 119
EYAV DAG+G+L+A+LAEAAFL GLE+NSD+V+MAS APLF+NDNDR ++PDAIVFN
Sbjct: 454 EYAVNEQRDAGKGSLLASLAEAAFLTGLEKNSDLVQMASYAPLFVNDNDRTWNPDAIVFN 513
Query: 120 SWQHYGCPNYWMLHFFKDSSGATLHPLTIQVSNYDQLAASALTWQNSNDGNTYLKIKVVN 179
SWQ YG P+YWM +F++SSG+ +HP+TI S D LAASA+TW++++D +L+IK+VN
Sbjct: 514 SWQQYGTPSYWMQTYFRESSGSVIHPITIGSSYSDSLAASAITWKDTHD--IFLRIKIVN 571
Query: 180 FGNKAVNLNIAVAGLENGIQEFGSIKTVLTSGWLRDENSFQQPDKVVPAASPITNAGEKM 239
FG AVNL I+ GL+ G+ S TVLTSG L DENSF +P+KVVP S + +A E+M
Sbjct: 572 FGPNAVNLAISSRGLQAGVNTAKSTVTVLTSGNLLDENSFAEPNKVVPVKSELPDASEEM 631
Query: 240 GVIVDPYSLTSFDLLLD 256
+ PYS TSFDL LD
Sbjct: 632 EAALSPYSFTSFDLALD 648
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,972,371
Number of extensions: 364327
Number of successful extensions: 772
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 767
Number of HSP's successfully gapped: 6
Length of query: 273
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 174
Effective length of database: 11,866,615
Effective search space: 2064791010
Effective search space used: 2064791010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)