BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0249500 Os03g0249500|AK121154
(484 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0249500 Similar to Nucleotide sugar epimerase-like pro... 624 e-179
Os02g0791500 Similar to Nucleotide sugar epimerase-like pro... 435 e-122
Os08g0526100 NAD-dependent epimerase/dehydratase family pro... 404 e-112
Os09g0504000 Similar to Nucleotide sugar epimerase-like pro... 397 e-111
Os06g0187200 Similar to Nucleotide sugar epimerase-like pro... 382 e-106
Os03g0278200 NAD-dependent epimerase/dehydratase family pro... 69 9e-12
>Os03g0249500 Similar to Nucleotide sugar epimerase-like protein
(UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6)
Length = 484
Score = 624 bits (1609), Expect = e-179, Method: Compositional matrix adjust.
Identities = 334/465 (71%), Positives = 334/465 (71%)
Query: 1 MAPQLXXXXXXXXXXXXXXSVKPQXXXXXXXXXXXXXXXPSPTSLLSKLAFWSVCXXXXX 60
MAPQL SVKPQ PSPTSLLSKLAFWSVC
Sbjct: 1 MAPQLTGAPGTAGAAGGAASVKPQFHHFHHHRLATRHHHPSPTSLLSKLAFWSVCSLSLL 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXHTSSPSAAATWGGAAWEKKXXXXXXXXXXXXXXLT 120
HTSSPSAAATWGGAAWEKK LT
Sbjct: 61 LAFLLLSPSAAPAPRAAPDSPRRSLHTSSPSAAATWGGAAWEKKVRASARVRRANGRGLT 120
Query: 121 VLVTXXXXXXXXXXXXXLRRRGDGVLGLDNFNDYYDPXXXXXXXXXXXXSGVYVVDGDIA 180
VLVT LRRRGDGVLGLDNFNDYYDP SGVYVVDGDIA
Sbjct: 121 VLVTGAAGFVGCHAAAALRRRGDGVLGLDNFNDYYDPALKRGRAALLARSGVYVVDGDIA 180
Query: 181 DAELLAKLFDVVPFTHVLHLAAQAGVRHALVDPMSYVRANVGGFVALLEAARMANPQPAI 240
DAELLAKLFDVVPFTHVLHLAAQAGVRHALVDPMSYVRANVGGFVALLEAARMANPQPAI
Sbjct: 181 DAELLAKLFDVVPFTHVLHLAAQAGVRHALVDPMSYVRANVGGFVALLEAARMANPQPAI 240
Query: 241 VWASSSSVYGLNSHVPFSEHDRTDRPASLYAATKKAGEEIAHAYNHIYGLSLTALRFFTV 300
VWASSSSVYGLNSHVPFSEHDRTDRPASLYAATKKAGEEIAHAYNHIYGLSLTALRFFTV
Sbjct: 241 VWASSSSVYGLNSHVPFSEHDRTDRPASLYAATKKAGEEIAHAYNHIYGLSLTALRFFTV 300
Query: 301 YGPWGRPDMAYFFFTRDILAGRPITVYESAGGGTHQTTISRDFTYIDDIVKGCVGALDXX 360
YGPWGRPDMAYFFFTRDILAGRPITVYESAGGGTHQTTISRDFTYIDDIVKGCVGALD
Sbjct: 301 YGPWGRPDMAYFFFTRDILAGRPITVYESAGGGTHQTTISRDFTYIDDIVKGCVGALDTA 360
Query: 361 XXXXXXXXXXXXPAPFRTYNLGNTSPVPXXXXXXXXXXXXXXXXXXXIVKMPRNGDVPYT 420
PAPFRTYNLGNTSPVP IVKMPRNGDVPYT
Sbjct: 361 GRSTGSGGKKRGPAPFRTYNLGNTSPVPVTQLVDLLEKLLKVKAVRKIVKMPRNGDVPYT 420
Query: 421 HANISLAQRELGYRPSTDLQTGVKKFVRWYLEYYMPGFAGKQKQH 465
HANISLAQRELGYRPSTDLQTGVKKFVRWYLEYYMPGFAGKQKQH
Sbjct: 421 HANISLAQRELGYRPSTDLQTGVKKFVRWYLEYYMPGFAGKQKQH 465
>Os02g0791500 Similar to Nucleotide sugar epimerase-like protein
(UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6)
Length = 437
Score = 435 bits (1119), Expect = e-122, Method: Compositional matrix adjust.
Identities = 214/372 (57%), Positives = 256/372 (68%), Gaps = 8/372 (2%)
Query: 87 TSSPSAAATWGGAAWEKKXXXXXXXX----XXXXXXLTVLVTXXXXXXXXXXXXXLRRRG 142
TSS AA+WGG WE++ ++VLVT LR+RG
Sbjct: 61 TSSKYFAASWGGLHWERQIRASAAPRRPPGSAAGAGMSVLVTGAAGFVGTHCSLALRKRG 120
Query: 143 DGVLGLDNFNDYYDPXXXXXXXXXXXXSGVYVVDGDIADAELLAKLFDVVPFTHVLHLAA 202
DGV+G+DNFN YYDP GV+V++GDI D LLAKLFDVVPFTHVLHLAA
Sbjct: 121 DGVVGIDNFNSYYDPSLKKARRSLLASHGVFVIEGDINDGRLLAKLFDVVPFTHVLHLAA 180
Query: 203 QAGVRHALVDPMSYVRANVGGFVALLEAARMANPQPAIVWASSSSVYGLNSHVPFSEHDR 262
QAGVR+A+ +P SYV +N+ G V LLEA + A+PQPAIVWASSSSVYGLN VPF+E DR
Sbjct: 181 QAGVRYAMENPASYVHSNIAGLVTLLEACKDADPQPAIVWASSSSVYGLNDKVPFTESDR 240
Query: 263 TDRPASLYAATKKAGEEIAHAYNHIYGLSLTALRFFTVYGPWGRPDMAYFFFTRDILAGR 322
TD+PASLYAATKKAGEEI H YNHIYGLS+T LRFFTVYGPWGRPDMAYF FTR+IL G+
Sbjct: 241 TDQPASLYAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGK 300
Query: 323 PITVYESAGGGTHQTTISRDFTYIDDIVKGCVGALDXXXXXXXXXXXXXXPAPFRTYNLG 382
PITVY G ++ ++RDFTYIDDIVKGC+G+LD PAP+R +NLG
Sbjct: 301 PITVYR----GKNRVDLARDFTYIDDIVKGCLGSLDTAGKSTGTGGKKRGPAPYRIFNLG 356
Query: 383 NTSPVPXXXXXXXXXXXXXXXXXXXIVKMPRNGDVPYTHANISLAQRELGYRPSTDLQTG 442
NTSPV +V+MP NGDVP+THANISLA+++LGY+P+T+L G
Sbjct: 357 NTSPVTVPNLVSILEKHLRVKAKKNVVEMPGNGDVPFTHANISLARQQLGYKPTTNLDVG 416
Query: 443 VKKFVRWYLEYY 454
+KKFV+WYL YY
Sbjct: 417 LKKFVKWYLSYY 428
>Os08g0526100 NAD-dependent epimerase/dehydratase family protein
Length = 478
Score = 404 bits (1037), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/366 (56%), Positives = 240/366 (65%), Gaps = 8/366 (2%)
Query: 91 SAAATWGGAAWEKKXXXXXXXXXXXXXXLTVLVTXXXXXXXXXXXXXLRRRGDGVLGLDN 150
SAA +GGAAWEK+ L+VLVT LR RGDGV+GLDN
Sbjct: 98 SAAVAYGGAAWEKEVRRSAAPRRDGG--LSVLVTGAAGFVGAHCSLALRARGDGVVGLDN 155
Query: 151 FNDYYDPXXXXXXXXXXXXSGVYVVDGDIADAELLAKLFDVVPFTHVLHLAAQAGVRHAL 210
FN YYDP GV V+D DI DA LL +LFD FTHVLHLAAQAGVR+A+
Sbjct: 156 FNSYYDPSLKRARQRLLASRGVAVLDADINDAALLERLFDAARFTHVLHLAAQAGVRYAM 215
Query: 211 VDPMSYVRANVGGFVALLE-AARMANPQPAIVWASSSSVYGLNSHVPFSEHDRTDRPASL 269
P +YV +NV G V++ E AA+ A+PQPAIVWASSSSVYGLN+ PFSE RTDRPASL
Sbjct: 216 RAPQTYVASNVAGLVSVFEVAAKHADPQPAIVWASSSSVYGLNTDAPFSEEHRTDRPASL 275
Query: 270 YAATKKAGEEIAHAYNHIYGLSLTALRFFTVYGPWGRPDMAYFFFTRDILAGRPITVYES 329
YAATKKAGE IAHAYNHIYGLS+T LRFFTVYGPWGRPDMAYF F R I+AG PIT++ +
Sbjct: 276 YAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFARSIVAGEPITLFRT 335
Query: 330 AGGGTHQTTISRDFTYIDDIVKGCVGALDXX-XXXXXXXXXXXXPAPFRTYNLGNTSPVP 388
A G + RDFTYIDD+VKGC+GALD PAP R YNLGNTSPVP
Sbjct: 336 ADGADAR----RDFTYIDDVVKGCLGALDTAGESTGTKSGKKRGPAPLRVYNLGNTSPVP 391
Query: 389 XXXXXXXXXXXXXXXXXXXIVKMPRNGDVPYTHANISLAQRELGYRPSTDLQTGVKKFVR 448
+V MP NGDVP+THAN+S A R+ GYRP+T L G+++FV
Sbjct: 392 VTRMVAILEKLLGRKANKRVVTMPSNGDVPFTHANVSHAARDFGYRPATPLDAGLRRFVD 451
Query: 449 WYLEYY 454
W++ YY
Sbjct: 452 WFVHYY 457
>Os09g0504000 Similar to Nucleotide sugar epimerase-like protein
(UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6)
Length = 498
Score = 397 bits (1020), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/363 (56%), Positives = 237/363 (65%), Gaps = 9/363 (2%)
Query: 95 TWGGAAWEKKXXXXXXXXXXXXXXLTVLVTXXXXXXXXXXXXXLRRRGDGVLGLDNFNDY 154
+GGAAWEK+ + VLVT LR RGDGVLGLDNFN Y
Sbjct: 104 VYGGAAWEKEVRRSAKPRKDGG--IAVLVTGAAGFVGTHCSLALRARGDGVLGLDNFNAY 161
Query: 155 YDPXXXXXXXXXXXXSGVYVVDGDIADAELLAKLFDVVPFTHVLHLAAQAGVRHALVDPM 214
YDP GV V+D DI DA LL KLFD+VPFTHVLHLAAQAGVR+A+ P
Sbjct: 162 YDPELKRARQRLLAGRGVLVLDADINDALLLEKLFDLVPFTHVLHLAAQAGVRYAMEAPQ 221
Query: 215 SYVRANVGGFVALLE-AARMANPQPAIVWASSSSVYGLNSHVPFSEHDRTDRPASLYAAT 273
+YV +NV G V +LE AA+ A+PQPAIVWASSSSVYGLN+ PFSE RTDRPASLYAAT
Sbjct: 222 TYVASNVAGLVTVLEVAAKHADPQPAIVWASSSSVYGLNTDAPFSEEHRTDRPASLYAAT 281
Query: 274 KKAGEEIAHAYNHIYGLSLTALRFFTVYGPWGRPDMAYFFFTRDILAGRPITVYESAGGG 333
KKAGE IAH YNHIYGLS+T LRFFTVYGPWGRPDMAYFFF + I++G PIT++ +A G
Sbjct: 282 KKAGEAIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFAKSIVSGEPITLFRAADGA 341
Query: 334 THQTTISRDFTYIDDIVKGCVGALD--XXXXXXXXXXXXXXPAPFRTYNLGNTSPVPXXX 391
+ RDFTYIDD+VKGC+GALD PAP R YNLGNTSPVP
Sbjct: 342 DAR----RDFTYIDDVVKGCLGALDTSGKSTGSSKSGKKSGPAPLRVYNLGNTSPVPVTR 397
Query: 392 XXXXXXXXXXXXXXXXIVKMPRNGDVPYTHANISLAQRELGYRPSTDLQTGVKKFVRWYL 451
IV MP NGDVP+THAN++ A + GYRP+T L G++ FV W+
Sbjct: 398 MVAILEKLLGKKANKRIVAMPSNGDVPFTHANVTHAAHDFGYRPTTSLDAGLRHFVDWFA 457
Query: 452 EYY 454
+YY
Sbjct: 458 DYY 460
>Os06g0187200 Similar to Nucleotide sugar epimerase-like protein
(UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6)
Length = 309
Score = 382 bits (982), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/300 (62%), Positives = 217/300 (72%), Gaps = 4/300 (1%)
Query: 155 YDPXXXXXXXXXXXXSGVYVVDGDIADAELLAKLFDVVPFTHVLHLAAQAGVRHALVDPM 214
YDP GV+VVDGDI D LLAKLFDVVPFTHVLHLAAQAGVR+A+ +P
Sbjct: 1 YDPSLKKARRALLGSHGVFVVDGDINDGRLLAKLFDVVPFTHVLHLAAQAGVRYAMENPS 60
Query: 215 SYVRANVGGFVALLEAARMANPQPAIVWASSSSVYGLNSHVPFSEHDRTDRPASLYAATK 274
SYVR+NV G V+LLE+ + A+PQPA+VWASSSSVYGLN VPFSE RTD+PASLYAATK
Sbjct: 61 SYVRSNVAGLVSLLESCKDADPQPAVVWASSSSVYGLNDAVPFSEAHRTDKPASLYAATK 120
Query: 275 KAGEEIAHAYNHIYGLSLTALRFFTVYGPWGRPDMAYFFFTRDILAGRPITVYESAGGGT 334
KAGE I H YNHIYGLS+T LRFFTVYGPWGRPDMAYFFFTR+IL G+P+TVY G
Sbjct: 121 KAGEAITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRNILQGKPVTVYR----GR 176
Query: 335 HQTTISRDFTYIDDIVKGCVGALDXXXXXXXXXXXXXXPAPFRTYNLGNTSPVPXXXXXX 394
I+RDFTYIDDIV+GC+ ALD AP+R +NLGNTSPV
Sbjct: 177 DHVDIARDFTYIDDIVRGCLAALDTAGRSTGGGGRKRGAAPYRIFNLGNTSPVTVPALVA 236
Query: 395 XXXXXXXXXXXXXIVKMPRNGDVPYTHANISLAQRELGYRPSTDLQTGVKKFVRWYLEYY 454
+V+MP NGDVP+THANISLA+ +LGY+P+T L+ G+KKFVRWYL YY
Sbjct: 237 MLERCLMVKARRHVVEMPGNGDVPFTHANISLAREQLGYKPTTSLEMGLKKFVRWYLSYY 296
>Os03g0278200 NAD-dependent epimerase/dehydratase family protein
Length = 675
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 9/180 (5%)
Query: 175 VDGDIADAELLAKLFDVVPFTHVLHLAAQAGVRHALVDPMSYVRANVGGFVALLEAARMA 234
V GDIA A+L+ L ++H AAQ V ++ + + + N+ G LLEA ++
Sbjct: 62 VKGDIASADLVNYLLTTESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVT 121
Query: 235 NPQPAIVWASSSSVYG-LNSHVPFSEHDRTD-RPASLYAATKKAGEEIAHAYNHIYGLSL 292
+ S+ VYG + H+ + P + Y+ATK E + AY YGL +
Sbjct: 122 GQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPV 181
Query: 293 TALRFFTVYGPWGRPDMAYFFFTRDILAGRPITVYESAGGGTHQTTISRDFTYIDDIVKG 352
R VYGP P+ F + G P+ ++ G G++ R + Y +D+ +
Sbjct: 182 ITTRGNNVYGPNQFPEKLIPKFILLAMRGLPLPIH---GDGSN----VRSYLYCEDVAEA 234
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,233,258
Number of extensions: 424439
Number of successful extensions: 727
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 712
Number of HSP's successfully gapped: 6
Length of query: 484
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 379
Effective length of database: 11,553,331
Effective search space: 4378712449
Effective search space used: 4378712449
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)