FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0187200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nucleotide sugar epimerase-like protein (UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.13 (0.0373) R2 : 0.201
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.02 (0.102) R2dE : 0.221 R2E : 0.199
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0874 (0.0861) R2dN8 : 0.00258 R2N8 : -0.0194
σ : 0.679
deviance : 212.82
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 23.4
memory length : 2313
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
195.1 0.656 4.17 0.123 0.223 1.14 -0.599 1.45 -0.00445 9.9 22.6 2197 -- --
199.1 0.657 4.1 0.653 0.199 1.14 -0.514 -- 0.203 10 23.3 2422 -- --
196.26 0.652 4.17 0.126 0.237 1.13 -- 1.36 -0.00399 10.7 22.5 2138 -- --
200.16 0.659 4.1 0.649 0.208 1.14 -- -- 0.199 9.71 23.32 2426 -- --
199.47 0.658 4.17 0.139 -- 1.17 -- 1.37 0.0144 -- 22.54 2220 -- --
250.02 0.741 4.21 0.179 0.333 -- -0.344 -- -0.303 10.7 -- -- -- --
250.49 0.741 4.21 0.166 0.334 -- -- -- -0.303 10.9 -- -- -- --
202.64 0.663 4.1 0.66 -- 1.17 -- -- 0.214 -- 23.37 2403 -- --
210.05 0.675 4.13 -- 0.235 0.985 -- -- 0.0658 9.17 23.6 2540 -- --
257.43 0.75 4.22 0.159 -- -- -- -- -0.306 -- -- -- -- --
251.22 0.741 4.21 -- 0.333 -- -- -- -0.322 10.9 -- -- -- --
212.82 0.679 4.13 -- -- 1.02 -- -- 0.0874 -- 23.4 2313 -- --
258.09 0.75 4.22 -- -- -- -- -- -0.323 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 193.26 temperature 10 720 > th dose dependent rect. 17 16
4 194.22 temperature 20 1440 > th dose dependent rect. 22 1
9 194.62 temperature 20 1440 > th dose dependent rect. 18 8
15 194.78 temperature 10 1440 > th dose dependent rect. 22 1
20 194.92 temperature 30 1440 < th dose dependent rect. 22 1
57 195.61 temperature 10 1440 > th dose dependent rect. 18 6
60 195.64 temperature 20 1440 > th dose dependent sin 13 NA
71 195.75 temperature 30 720 < th dose dependent rect. 17 17
72 195.76 temperature 20 720 > th dose dependent sin 10 NA
78 195.80 temperature 30 1440 < th dose dependent rect. 18 6
93 195.95 temperature 10 720 > th dose dependent rect. 17 22
132 196.35 temperature 10 720 > th dose dependent sin 11 NA
232 197.11 temperature 30 720 < th dose dependent sin 11 NA
279 197.51 temperature 10 1440 > th dose dependent sin 14 NA
375 198.01 temperature 15 720 > th dose dependent rect. 13 22
377 198.02 temperature 25 720 < th dose dependent rect. 9 23
391 198.08 temperature 25 720 < th dose dependent rect. 1 23
447 198.31 temperature 10 720 > th dose dependent rect. 10 23
464 198.41 temperature 25 720 < th dose dependent no NA NA
476 198.44 temperature 30 1440 < th dose dependent sin 14 NA
508 198.59 temperature 25 720 < th dose dependent rect. 4 23
570 198.77 temperature 25 720 < th dose dependent rect. 6 23
811 199.49 temperature 10 720 > th dose dependent rect. 8 23
889 199.73 temperature 10 270 > th dose dependent rect. 24 23
963 199.91 temperature 10 720 > th dose dependent rect. 3 22