Os03g0249500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nucleotide sugar epimerase-like protein (UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6).
FiT-DB / Search/ Help/ Sample detail
|
Os03g0249500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Nucleotide sugar epimerase-like protein (UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.1 | 0.37 | 8.91 | -0.568 | 0.944 | 0.71 | 0.12 | -0.111 | -0.404 | 9.39 | 75.02 | 1227 | -- | -- |
| 62.12 | 0.367 | 8.91 | -0.562 | 0.945 | 0.704 | 0.142 | -- | -0.404 | 9.39 | 75.16 | 1224 | -- | -- |
| 62.15 | 0.367 | 8.91 | -0.568 | 0.945 | 0.709 | -- | -0.13 | -0.405 | 9.39 | 75 | 1224 | -- | -- |
| 62.18 | 0.367 | 8.91 | -0.555 | 0.944 | 0.699 | -- | -- | -0.402 | 9.39 | 75 | 1224 | -- | -- |
| 107.71 | 0.483 | 8.93 | -0.557 | -- | 0.611 | -- | -0.182 | -0.41 | -- | 79.03 | 1496 | -- | -- |
| 73.19 | 0.401 | 8.92 | -0.429 | 0.879 | -- | 0.065 | -- | -0.451 | 8.97 | -- | -- | -- | -- |
| 73.2 | 0.401 | 8.92 | -0.427 | 0.879 | -- | -- | -- | -0.451 | 8.98 | -- | -- | -- | -- |
| 107.75 | 0.483 | 8.94 | -0.537 | -- | 0.613 | -- | -- | -0.413 | -- | 79 | 1494 | -- | -- |
| 69.98 | 0.39 | 8.9 | -- | 0.928 | 0.573 | -- | -- | -0.36 | 9.36 | 76 | 1228 | -- | -- |
| 117.49 | 0.506 | 8.95 | -0.428 | -- | -- | -- | -- | -0.445 | -- | -- | -- | -- | -- |
| 78.01 | 0.413 | 8.91 | -- | 0.878 | -- | -- | -- | -0.403 | 9.01 | -- | -- | -- | -- |
| 114.6 | 0.499 | 8.94 | -- | -- | 0.543 | -- | -- | -0.393 | -- | 89 | 1489 | -- | -- |
| 122.32 | 0.516 | 8.94 | -- | -- | -- | -- | -- | -0.398 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.68 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 11 |
| 4 | 62.94 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 4 |
| 5 | 62.97 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 20 |
| 7 | 63.12 | humidity | 70 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 12 | 63.17 | humidity | 70 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 13 | 63.17 | humidity | 70 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 15 | 63.18 | humidity | 70 | 1440 | < th | dose dependent | sin | 18 | NA |
| 16 | 63.19 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 19 | 63.19 | humidity | 70 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 21 | 63.20 | humidity | 60 | 1440 | > th | dose independent | sin | 19 | NA |
| 22 | 63.20 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 24 | 63.20 | humidity | 70 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 28 | 63.21 | humidity | 60 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 50 | 63.23 | humidity | 70 | 1440 | < th | dose dependent | rect. | 6 | 13 |
| 108 | 63.26 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 14 |
| 128 | 63.27 | humidity | 60 | 1440 | > th | dose independent | rect. | 9 | 19 |
| 131 | 63.27 | humidity | 70 | 1440 | < th | dose dependent | no | NA | NA |
| 224 | 63.30 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 16 |
| 244 | 63.30 | humidity | 70 | 1440 | < th | dose dependent | rect. | 13 | 19 |
| 269 | 63.31 | humidity | 70 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 288 | 63.33 | humidity | 60 | 1440 | > th | dose independent | no | NA | NA |
| 348 | 63.34 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 18 |
| 426 | 63.43 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 456 | 63.49 | humidity | 60 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 536 | 63.54 | humidity | 60 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 537 | 63.54 | humidity | 60 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 550 | 63.55 | humidity | 60 | 1440 | < th | dose independent | sin | 19 | NA |
| 555 | 63.55 | humidity | 60 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 590 | 63.58 | humidity | 60 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 593 | 63.59 | humidity | 60 | 1440 | < th | dose independent | rect. | 13 | 5 |
| 680 | 63.64 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 716 | 63.66 | humidity | 60 | 1440 | < th | dose independent | no | NA | NA |
| 868 | 63.70 | humidity | 60 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 882 | 63.71 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 883 | 63.72 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 20 |
| 935 | 63.79 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 968 | 63.82 | humidity | 70 | 1440 | < th | dose independent | sin | 10 | NA |
| 970 | 63.82 | humidity | 80 | 1440 | < th | dose dependent | sin | 9 | NA |
| 974 | 63.83 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |