BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0244600 Os03g0244600|AK103524
(524 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0244600 Similar to AUX1-like protein 921 0.0
Os10g0147400 Similar to Auxin influx carrier protein 773 0.0
Os11g0169200 Amino acid/polyamine transporter II family pro... 723 0.0
Os01g0856500 Amino acid/polyamine transporter II family pro... 721 0.0
Os05g0447200 Similar to AUX1-like protein 718 0.0
>Os03g0244600 Similar to AUX1-like protein
Length = 524
Score = 921 bits (2380), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/470 (96%), Positives = 452/470 (96%)
Query: 1 MGSAADGSLANEKAPAETVGVGRYVEMEQDGGGPSTAKSRLSGLLWHGGSAYDAWFSCAS 60
MGSAADGSLANEKAPAETVGVGRYVEMEQDGGGPSTAKSRLSGLLWHGGSAYDAWFSCAS
Sbjct: 1 MGSAADGSLANEKAPAETVGVGRYVEMEQDGGGPSTAKSRLSGLLWHGGSAYDAWFSCAS 60
Query: 61 NQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRN 120
NQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRN
Sbjct: 61 NQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRN 120
Query: 121 HVIQWFEVLDGLLGRHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDKLDKRTWTYIF 180
HVIQWFEVLDGLLGRHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDKLDKRTWTYIF
Sbjct: 121 HVIQWFEVLDGLLGRHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDKLDKRTWTYIF 180
Query: 181 GACCATTVFIPSFHNYRIWSFLGLVMTTYTAWYLAVASLIHGQVDGVKHSGPTKMVLYFT 240
GACCATTVFIPSFHNYRIWSFLGLVMTTYTAWYLAVASLIHGQVDGVKHSGPTKMVLYFT
Sbjct: 181 GACCATTVFIPSFHNYRIWSFLGLVMTTYTAWYLAVASLIHGQVDGVKHSGPTKMVLYFT 240
Query: 241 GATNILYTFGGHAVTVEIMHAMWRPQKFKAIYLMATLYVLTLTLPSAASVYWAFGDELLT 300
GATNILYTFGGHAVTVEIMHAMWRPQKFKAIYLMATLYVLTLTLPSAASVYWAFGDELLT
Sbjct: 241 GATNILYTFGGHAVTVEIMHAMWRPQKFKAIYLMATLYVLTLTLPSAASVYWAFGDELLT 300
Query: 301 HSNALALLPRTAFRDAAVVLMLIHQFITFGFACTPLYFVWEKLIGLHDCRSLFKRAAARL 360
HSNALALLPRTAFRDAAVVLMLIHQFITFGFACTPLYFVWEKLIGLHDCRSLFKRAAARL
Sbjct: 301 HSNALALLPRTAFRDAAVVLMLIHQFITFGFACTPLYFVWEKLIGLHDCRSLFKRAAARL 360
Query: 361 PVVVPIWFLAIIFPFFGPINSAVGSLLVSFTVYIIPALAHMITFRSAHARENAVEPPPRF 420
PVVVPIWFLAIIFPFFGPINSAVGSLLVSFTVYIIPALAHMITFRSAHARENAVEPPPRF
Sbjct: 361 PVVVPIWFLAIIFPFFGPINSAVGSLLVSFTVYIIPALAHMITFRSAHARENAVEPPPRF 420
Query: 421 VGRWTGTFIINXXXXXXXXXXXXXXXXXXSMTNFVRQIDTFGLFTKCYQC 470
VGRWTGTFIIN SMTNFVRQIDTFGLFTKCYQC
Sbjct: 421 VGRWTGTFIINAFVVAWVLVVGFGFGGWASMTNFVRQIDTFGLFTKCYQC 470
>Os10g0147400 Similar to Auxin influx carrier protein
Length = 547
Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/436 (85%), Positives = 398/436 (91%)
Query: 35 STAKSRLSGLLWHGGSAYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGS 94
+ A++RLSGLLWHGGSAYDAWFSCASNQVAQVLLTLPYSF+QLGM SG+LFQLFYGLLGS
Sbjct: 47 TAARTRLSGLLWHGGSAYDAWFSCASNQVAQVLLTLPYSFAQLGMASGLLFQLFYGLLGS 106
Query: 95 WTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGRHWRNVGLAFNCTFLLFGSV 154
WTAYLISILY+EYRTRKER+KVDFRNHVIQWFEVLDGLLGRHWRNVGLAFNCTFLLFGSV
Sbjct: 107 WTAYLISILYLEYRTRKERDKVDFRNHVIQWFEVLDGLLGRHWRNVGLAFNCTFLLFGSV 166
Query: 155 IQLIACASNIYYINDKLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLVMTTYTAWYL 214
IQLI CASNIYYIND LDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL+MTTYTAWY+
Sbjct: 167 IQLIGCASNIYYINDHLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYI 226
Query: 215 AVASLIHGQVDGVKHSGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWRPQKFKAIYLM 274
AVASLIHGQV+GV HSGPT +VLYFTGATNILYTFGGHAVTVEIMHAMWRPQKFKAIYL+
Sbjct: 227 AVASLIHGQVEGVAHSGPTSIVLYFTGATNILYTFGGHAVTVEIMHAMWRPQKFKAIYLL 286
Query: 275 ATLYVLTLTLPSAASVYWAFGDELLTHSNALALLPRTAFRDAAVVLMLIHQFITFGFACT 334
AT+YVLTLTLPSA++ YWAFGD LLTHSNALALLPRT +RDAAVVLMLIHQFITFGFACT
Sbjct: 287 ATVYVLTLTLPSASAAYWAFGDALLTHSNALALLPRTPWRDAAVVLMLIHQFITFGFACT 346
Query: 335 PLYFVWEKLIGLHDCRSLFKRAAARLPVVVPIWFLAIIFPFFGPINSAVGSLLVSFTVYI 394
PLYFVWEKL+GLH C SL KRAAARLPVV+PIWFLAIIFPFFGPINSAVGSLLVSFTVYI
Sbjct: 347 PLYFVWEKLVGLHGCPSLCKRAAARLPVVLPIWFLAIIFPFFGPINSAVGSLLVSFTVYI 406
Query: 395 IPALAHMITFRSAHARENAVEPPPRFVGRWTGTFIINXXXXXXXXXXXXXXXXXXSMTNF 454
IP+LA+M+TFRS +R+NAVE PPRF G WTG ++IN S+TNF
Sbjct: 407 IPSLAYMVTFRSPQSRQNAVERPPRFAGGWTGAYVINSFVVAWVLVVGFGFGGWASITNF 466
Query: 455 VRQIDTFGLFTKCYQC 470
V Q+DTFGLF KCYQC
Sbjct: 467 VHQVDTFGLFAKCYQC 482
>Os11g0169200 Amino acid/polyamine transporter II family protein
Length = 480
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/478 (74%), Positives = 394/478 (82%), Gaps = 18/478 (3%)
Query: 9 LANEKAPAETVGVGRYVEMEQDGGGPSTA--------------KSRLSGLLWHGGSAYDA 54
+A+EK ET+ G YVEME++G + K +S L WHGGS YDA
Sbjct: 1 MASEKV--ETIVAGNYVEMEREGAATAGEGVGGAAAASGRRRGKLAVSSLFWHGGSVYDA 58
Query: 55 WFSCASNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKERE 114
WFSCASNQVAQVLLTLPYSFSQLGM SG+ FQ+FYGL+GSWTAYLIS+LYVEYRTR+ER+
Sbjct: 59 WFSCASNQVAQVLLTLPYSFSQLGMASGVAFQVFYGLMGSWTAYLISVLYVEYRTRRERD 118
Query: 115 KVDFRNHVIQWFEVLDGLLGRHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDKLDKR 174
KVDFRNHVIQWFEVLDGLLGRHWRN GL FNCTFLLFGSVIQLIACASNIYYIND+LDKR
Sbjct: 119 KVDFRNHVIQWFEVLDGLLGRHWRNAGLLFNCTFLLFGSVIQLIACASNIYYINDRLDKR 178
Query: 175 TWTYIFGACCATTVFIPSFHNYRIWSFLGLVMTTYTAWYLAVASLIHGQVDG-VKHSGPT 233
TWTYIFGACCATTVF+PSFHNYR+WSFLGL+MT+YTAWYL VA+++HG+VDG +GP+
Sbjct: 179 TWTYIFGACCATTVFVPSFHNYRVWSFLGLLMTSYTAWYLTVAAVVHGKVDGAAPRAGPS 238
Query: 234 K-MVLYFTGATNILYTFGGHAVTVEIMHAMWRPQKFKAIYLMATLYVLTLTLPSAASVYW 292
K MVLYFTGATNILYTFGGHAVTVEIMHAMWRP++FK IYL AT YVLTLTLPSAA++YW
Sbjct: 239 KTMVLYFTGATNILYTFGGHAVTVEIMHAMWRPRRFKMIYLAATAYVLTLTLPSAAAMYW 298
Query: 293 AFGDELLTHSNALALLPRTAFRDAAVVLMLIHQFITFGFACTPLYFVWEKLIGLHDCRSL 352
AFGD LL HSNA ALLPRT +RDAAVVLMLIHQFITFGFACTPLYFVWEK IG+H +
Sbjct: 299 AFGDALLDHSNAFALLPRTPWRDAAVVLMLIHQFITFGFACTPLYFVWEKAIGVHGGAGV 358
Query: 353 FKRAAARLPVVVPIWFLAIIFPFFGPINSAVGSLLVSFTVYIIPALAHMITFRSAHAREN 412
+RAAARLPVV+PIWFLA+IFPFFGPINS VGS LVSFTVYIIPA+AHM TF A AREN
Sbjct: 359 LRRAAARLPVVLPIWFLAVIFPFFGPINSTVGSFLVSFTVYIIPAMAHMATFAPAAAREN 418
Query: 413 AVEPPPRFVGRWTGTFIINXXXXXXXXXXXXXXXXXXSMTNFVRQIDTFGLFTKCYQC 470
AVEPPPR +G W GTF N S NFVRQ+DTFGLFTKCYQC
Sbjct: 419 AVEPPPRALGGWPGTFAANCFVVAWVLVVGFGFGGWASTVNFVRQVDTFGLFTKCYQC 476
>Os01g0856500 Amino acid/polyamine transporter II family protein
Length = 492
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/470 (73%), Positives = 392/470 (83%), Gaps = 2/470 (0%)
Query: 3 SAADGSLANEKAPAETVGVGRYV--EMEQDGGGPSTAKSRLSGLLWHGGSAYDAWFSCAS 60
A + +A+ E VGV E D K + LLWHGGS +DAWFSCAS
Sbjct: 6 QAEEAIVADSNGKEEEVGVMGVSAGEHGADDHHGGGGKFSMKNLLWHGGSVWDAWFSCAS 65
Query: 61 NQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRN 120
NQVAQVLLTLPYSFSQLGMLSG+L QLFYG +GSWTAYLIS+LYVEYR+RKE+E V F+N
Sbjct: 66 NQVAQVLLTLPYSFSQLGMLSGVLLQLFYGFMGSWTAYLISVLYVEYRSRKEKEGVSFKN 125
Query: 121 HVIQWFEVLDGLLGRHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDKLDKRTWTYIF 180
HVIQWFEVLDGLLG +W+ GLAFNCTFLLFGSVIQLIACASNIYYIND+LDKRTWTYIF
Sbjct: 126 HVIQWFEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIF 185
Query: 181 GACCATTVFIPSFHNYRIWSFLGLVMTTYTAWYLAVASLIHGQVDGVKHSGPTKMVLYFT 240
GACCATTVFIPSFHNYRIWSFLGL MTTYTAWYLA+A+L++GQ +G+ H+GPTK+VLYFT
Sbjct: 186 GACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALLNGQAEGITHTGPTKLVLYFT 245
Query: 241 GATNILYTFGGHAVTVEIMHAMWRPQKFKAIYLMATLYVLTLTLPSAASVYWAFGDELLT 300
GATNILYTFGGHAVTVEIMHAMW+P KFK IYL+ATLYV TLTLPSA+++YWAFGDELLT
Sbjct: 246 GATNILYTFGGHAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPSASAMYWAFGDELLT 305
Query: 301 HSNALALLPRTAFRDAAVVLMLIHQFITFGFACTPLYFVWEKLIGLHDCRSLFKRAAARL 360
HSNA +LLP+T +RDAAV+LMLIHQFITFGFACTPLYFVWEK+IG+HD +S+ RA ARL
Sbjct: 306 HSNAFSLLPKTGWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLRALARL 365
Query: 361 PVVVPIWFLAIIFPFFGPINSAVGSLLVSFTVYIIPALAHMITFRSAHARENAVEPPPRF 420
P+VVPIWFLAIIFPFFGPINSAVG+LLVSFTVYIIPALAH++T+R+A AR NA E PP F
Sbjct: 366 PIVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPALAHILTYRTASARMNAAEKPPFF 425
Query: 421 VGRWTGTFIINXXXXXXXXXXXXXXXXXXSMTNFVRQIDTFGLFTKCYQC 470
+ WTG F++N SM NF+RQIDTFGLF KCYQC
Sbjct: 426 LPSWTGMFVLNMFIVVWVLVVGFGLGGWASMVNFIRQIDTFGLFAKCYQC 475
>Os05g0447200 Similar to AUX1-like protein
Length = 482
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/469 (74%), Positives = 396/469 (84%), Gaps = 7/469 (1%)
Query: 2 GSAADGSLANEKAPAETVGVGRYVEMEQDGGGPSTAKSRLSGLLWHGGSAYDAWFSCASN 61
G A+ ++ + A E V + +EQDG K ++ LLWHGGS +DAWFSCASN
Sbjct: 5 GDQAEEAIVAD-AGKEEAEVRAAMGVEQDG------KFSMTSLLWHGGSVWDAWFSCASN 57
Query: 62 QVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISILYVEYRTRKEREKVDFRNH 121
QVAQVLLTLPYSFSQLGMLSG+L Q+FYGL+GSWTAYLIS+LYVEYR RKE+E V F+NH
Sbjct: 58 QVAQVLLTLPYSFSQLGMLSGLLLQVFYGLMGSWTAYLISVLYVEYRARKEKEGVSFKNH 117
Query: 122 VIQWFEVLDGLLGRHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDKLDKRTWTYIFG 181
VIQWFEVLDGLLG +W+ GLAFNCTFLLFGSVIQLIACASNIYYIND+LDKRTWTYIFG
Sbjct: 118 VIQWFEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFG 177
Query: 182 ACCATTVFIPSFHNYRIWSFLGLVMTTYTAWYLAVASLIHGQVDGVKHSGPTKMVLYFTG 241
ACC+TTVFIPSFHNYRIWSFLGL MTTYTAWYLA+A+ +HGQVDGV HSGP+KMVLYFTG
Sbjct: 178 ACCSTTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAAAVHGQVDGVTHSGPSKMVLYFTG 237
Query: 242 ATNILYTFGGHAVTVEIMHAMWRPQKFKAIYLMATLYVLTLTLPSAASVYWAFGDELLTH 301
ATNILYTFGGHAVTVEIMHAMW+PQKFK IYL+ATLYV TLTLPSA+++YWAFGD LLTH
Sbjct: 238 ATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLVATLYVFTLTLPSASAMYWAFGDALLTH 297
Query: 302 SNALALLPRTAFRDAAVVLMLIHQFITFGFACTPLYFVWEKLIGLHDCRSLFKRAAARLP 361
SNA +LLPR+ +RDAAV+LMLIHQFITFGFACTPLYFVWEK IG+H RS+ RA ARLP
Sbjct: 298 SNAFSLLPRSGWRDAAVILMLIHQFITFGFACTPLYFVWEKAIGMHGTRSVLTRALARLP 357
Query: 362 VVVPIWFLAIIFPFFGPINSAVGSLLVSFTVYIIPALAHMITFRSAHARENAVEPPPRFV 421
+VVPIWFLAIIFPFFGPINSAVG+LLVSFTVYIIP+L+H++T+RSA AR NA E PP F+
Sbjct: 358 IVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLSHILTYRSASARLNAAEKPPPFL 417
Query: 422 GRWTGTFIINXXXXXXXXXXXXXXXXXXSMTNFVRQIDTFGLFTKCYQC 470
W+G F++N S+TNF++QIDTFGLF KCYQC
Sbjct: 418 PSWSGMFVVNVFVVAWVLVVGFGLGGWASVTNFIKQIDTFGLFAKCYQC 466
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.140 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,644,706
Number of extensions: 631136
Number of successful extensions: 1668
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1657
Number of HSP's successfully gapped: 6
Length of query: 524
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 419
Effective length of database: 11,553,331
Effective search space: 4840845689
Effective search space used: 4840845689
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 158 (65.5 bits)