BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0233000 Os03g0233000|AK069495
(350 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0233000 Protein of unknown function DUF607 family protein 431 e-121
Os10g0501500 Protein of unknown function DUF607 family protein 186 2e-47
Os01g0817000 Protein of unknown function DUF607 family protein 102 6e-22
Os11g0124500 Protein of unknown function DUF607 family protein 99 4e-21
Os12g0122100 Protein of unknown function DUF607 family protein 97 1e-20
>Os03g0233000 Protein of unknown function DUF607 family protein
Length = 350
Score = 431 bits (1107), Expect = e-121, Method: Compositional matrix adjust.
Identities = 230/350 (65%), Positives = 230/350 (65%)
Query: 1 MAFRRTLARGIWXXXXXXXXXXXXXXXXXXXXXXXXXXXVDDCPTLAYLRPRPGTIRYTT 60
MAFRRTLARGIW VDDCPTLAYLRPRPGTIRYTT
Sbjct: 1 MAFRRTLARGIWAGKNANAAAACPAAAAPKPPARRPLPAVDDCPTLAYLRPRPGTIRYTT 60
Query: 61 ASVPLPAHCFPALPVGDQLFNRLRLDGLVPPTTAVTRPPXXXXXXXXXXXXXXXXXXXXX 120
ASVPLPAHCFPALPVGDQLFNRLRLDGLVPPTTAVTRPP
Sbjct: 61 ASVPLPAHCFPALPVGDQLFNRLRLDGLVPPTTAVTRPPEEEGVGVTVEEARKVARAAEM 120
Query: 121 XXXXXXLRSNAQSVVSGSEFAALCVDIXXXXXXXXXXXXXXDDSGVVIVLGDAVFLRPDM 180
LRSNAQSVVSGSEFAALCVDI DDSGVVIVLGDAVFLRPDM
Sbjct: 121 EVARARLRSNAQSVVSGSEFAALCVDIAGGAEGGRRLARALDDSGVVIVLGDAVFLRPDM 180
Query: 181 IAKAIGSMIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIDXXXXXQVRRELWCG 240
IAKAIGSMIP GID QVRRELWCG
Sbjct: 181 IAKAIGSMIPATAHATRAAASVVEVRKKREEEEELRAMEEEKAGIDAAAAAQVRRELWCG 240
Query: 241 LGLLAAQTLGFMRLTFWELSWDVMEPVCFYVTSLYFMSGYAFFMRTSTEPSFEGFYRSRL 300
LGLLAAQTLGFMRLTFWELSWDVMEPVCFYVTSLYFMSGYAFFMRTSTEPSFEGFYRSRL
Sbjct: 241 LGLLAAQTLGFMRLTFWELSWDVMEPVCFYVTSLYFMSGYAFFMRTSTEPSFEGFYRSRL 300
Query: 301 ASRQRRLMRARSFDVARYEALKEQXXXXXXXXXXXXXXIVLRQQHVTHVH 350
ASRQRRLMRARSFDVARYEALKEQ IVLRQQHVTHVH
Sbjct: 301 ASRQRRLMRARSFDVARYEALKEQVGGGARYGVAARDAIVLRQQHVTHVH 350
>Os10g0501500 Protein of unknown function DUF607 family protein
Length = 336
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/264 (40%), Positives = 129/264 (48%), Gaps = 23/264 (8%)
Query: 73 LPVGDQL------FNRLRLDGLVPPTTAVTRPPXXXXXXXXXXXXX--------XXXXXX 118
+P+ D++ F R+ LDGLVPP T P
Sbjct: 45 IPLADRIRDLGAAFPRINLDGLVPPAPPQTHPTVAREERASASAVAGLTVEEARKVLRAT 104
Query: 119 XXXXXXXXLRSNAQSVVSGSEFAALCVDIXXXXXXXXXXXXXXDDSGVVIVLGDAVFLRP 178
LR++ V +EF LC D D+SG VIVLG VFLRP
Sbjct: 105 QMEAARARLRASGAGTVPYAEFLRLCCD-AAGAESGASVARALDESGSVIVLGKTVFLRP 163
Query: 179 DMIAKAIGSMIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIDXXXXXQVRRELW 238
+M+ KAI IP ID QVRRELW
Sbjct: 164 EMVVKAIEKAIPIPRAQPIALDGPAREELKAMEAQKVE--------IDRTAALQVRRELW 215
Query: 239 CGLGLLAAQTLGFMRLTFWELSWDVMEPVCFYVTSLYFMSGYAFFMRTSTEPSFEGFYRS 298
GL L QT GFMRLTFWELSWDVMEP+CFYVTS+YFM+GY FF+RT EPSFEGF+ S
Sbjct: 216 LGLAYLVVQTAGFMRLTFWELSWDVMEPICFYVTSMYFMAGYTFFLRTKKEPSFEGFFES 275
Query: 299 RLASRQRRLMRARSFDVARYEALK 322
R A++Q+RLM AR FD+ RY+ L+
Sbjct: 276 RFAAKQKRLMHARDFDLRRYDELR 299
>Os01g0817000 Protein of unknown function DUF607 family protein
Length = 305
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 79/158 (50%), Gaps = 11/158 (6%)
Query: 165 GVVIVLGDAVFLRPDMIAKAIGSMIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG 224
GVV++ D V+L+PD I + +P
Sbjct: 128 GVVLLFRDKVYLQPDKIVDLVRKAMPLALTPEDDPRKEELKKLQTQLE-----------D 176
Query: 225 IDXXXXXQVRRELWCGLGLLAAQTLGFMRLTFWELSWDVMEPVCFYVTSLYFMSGYAFFM 284
I+ QVRR LW GLG L Q F RLTFWE SWDVMEP+ F+ T+ + GYA+F+
Sbjct: 177 INKLAHKQVRRILWSGLGFLITQVGLFFRLTFWEFSWDVMEPITFFTTTTGLVVGYAYFL 236
Query: 285 RTSTEPSFEGFYRSRLASRQRRLMRARSFDVARYEALK 322
TS +P++ F SRQ++L++ ++F++ RY L+
Sbjct: 237 ITSRDPTYRDFMERLFESRQKKLIQRQNFNLDRYLELQ 274
>Os11g0124500 Protein of unknown function DUF607 family protein
Length = 151
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 61/100 (61%)
Query: 225 IDXXXXXQVRRELWCGLGLLAAQTLGFMRLTFWELSWDVMEPVCFYVTSLYFMSGYAFFM 284
ID QVRR LW GLG Q F RLTFWE SWDVMEP+ F+ T+ + GYA+F+
Sbjct: 34 IDKLAHKQVRRILWSGLGFFMCQVGLFFRLTFWEFSWDVMEPIAFFTTASGLLVGYAYFL 93
Query: 285 RTSTEPSFEGFYRSRLASRQRRLMRARSFDVARYEALKEQ 324
TS +P++E F SR R+L SFD+A+Y L++
Sbjct: 94 ITSRDPTYEDFMERLYLSRHRKLCAKNSFDMAKYLELQKH 133
>Os12g0122100 Protein of unknown function DUF607 family protein
Length = 151
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 60/100 (60%)
Query: 225 IDXXXXXQVRRELWCGLGLLAAQTLGFMRLTFWELSWDVMEPVCFYVTSLYFMSGYAFFM 284
ID QVRR LW GLG Q F RLTFWE SWDVMEP+ F+ T+ + GYA+F+
Sbjct: 34 IDKLAHKQVRRILWSGLGFFMCQVGLFFRLTFWEFSWDVMEPIAFFTTASGLLVGYAYFL 93
Query: 285 RTSTEPSFEGFYRSRLASRQRRLMRARSFDVARYEALKEQ 324
TS +P++E F SR R+L SFD+ +Y L++
Sbjct: 94 ITSRDPTYEDFMERLYLSRHRKLCAKNSFDMEKYLELQKH 133
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.140 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,478,839
Number of extensions: 236400
Number of successful extensions: 571
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 568
Number of HSP's successfully gapped: 5
Length of query: 350
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 248
Effective length of database: 11,709,973
Effective search space: 2904073304
Effective search space used: 2904073304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 156 (64.7 bits)