FiT-DB / Search/ Help/ Sample detail

Os01g0817000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF607 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0219) R2 : 0.866
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.12 (0.0574) R2dC : 0.869 R2C : 0.861
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.18 (0.0461) R2dN8 : 0.00575 R2N8 : -0.00239
σ : 0.413
deviance : 78
__
_____
C
peak time of C : 6.09
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
67.77 0.387 10.3 0.497 3.08 0.424 0.481 -0.555 -0.0606 6.2 19.3 126 -- --
67.99 0.387 10.3 0.437 3.1 0.504 0.375 -- -0.0742 6.23 19.3 126 -- --
66.79 0.384 10.3 0.505 3.1 0.413 -- -0.648 -0.0602 6.21 19.2 116 -- --
68.34 0.388 10.3 0.441 3.1 0.503 -- -- -0.0757 6.22 19 133 -- --
331.1 0.847 10.3 1.04 -- 2.21 -- -0.25 0.216 -- 27.5 439 -- --
75.45 0.407 10.3 0.288 3.11 -- 0.356 -- -0.146 6.11 -- -- -- --
75.76 0.408 10.3 0.292 3.11 -- -- -- -0.147 6.1 -- -- -- --
330.73 0.847 10.3 0.864 -- 2.2 -- -- 0.271 -- 27.5 445 -- --
73.08 0.4 10.3 -- 3.11 0.394 -- -- -0.137 6.18 19 133 -- --
578.72 1.12 10.4 0.38 -- -- -- -- -0.0774 -- -- -- -- --
78 0.413 10.3 -- 3.12 -- -- -- -0.18 6.09 -- -- -- --
345.63 0.866 10.3 -- -- 2.25 -- -- 0.127 -- 28.14 459 -- --
582.53 1.13 10.4 -- -- -- -- -- -0.12 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 59.65 temperature 20.0 270 > th dose independent rect. 12 14
3 60.98 temperature 20.0 10 > th dose independent rect. 14 14
15 62.98 precipitation 0.1 270 < th dose independent rect. 2 10
16 62.98 precipitation 0.1 270 < th dose dependent rect. 2 10
17 63.06 precipitation 0.1 270 < th dose independent rect. 12 14
18 63.06 precipitation 0.1 270 < th dose dependent rect. 12 14
19 63.20 atmosphere 1005.0 720 > th dose independent rect. 17 10
24 63.26 atmosphere 1000.0 30 > th dose dependent rect. 18 13
25 63.29 atmosphere 1005.0 720 > th dose independent rect. 18 8
35 63.53 wind 1.0 270 < th dose dependent rect. 24 1
37 63.62 temperature 10.0 270 > th dose independent rect. 2 10
38 63.62 atmosphere 995.0 270 > th dose independent rect. 2 10
39 63.62 atmosphere 1015.0 270 < th dose independent rect. 2 10
41 63.62 temperature 10.0 270 > th dose independent rect. 12 14
44 63.71 wind 9.0 270 < th dose independent rect. 12 14
45 63.79 temperature 20.0 270 > th dose independent rect. 23 3
46 63.80 humidity 50.0 270 > th dose independent rect. 2 10
48 63.82 atmosphere 1005.0 270 > th dose independent rect. 17 16
49 63.85 temperature 20.0 90 > th dose independent rect. 23 5
50 63.86 wind 9.0 270 < th dose independent rect. 2 10
52 63.86 temperature 30.0 10 < th dose dependent rect. 17 7
53 63.87 atmosphere 995.0 10 > th dose dependent rect. 17 20
58 63.93 temperature 30.0 270 < th dose dependent rect. 16 6
78 64.20 wind 1.0 270 < th dose independent rect. 23 3
83 64.29 humidity 50.0 90 > th dose independent rect. 24 17
85 64.31 temperature 20.0 90 > th dose independent rect. 23 18
96 64.44 atmosphere 1005.0 10 > th dose independent rect. 18 13
99 64.45 temperature 30.0 270 < th dose dependent rect. 17 4
101 64.47 atmosphere 995.0 90 > th dose dependent rect. 17 7
105 64.50 atmosphere 995.0 10 > th dose dependent rect. 17 8
113 64.57 wind 1.0 90 > th dose independent rect. 17 7
118 64.64 humidity 50.0 10 > th dose independent rect. 1 16
120 64.66 wind 9.0 90 < th dose independent rect. 24 17
121 64.66 wind 1.0 90 > th dose independent rect. 17 20
124 64.68 radiation 1.0 30 < th dose independent rect. 17 8
131 64.73 temperature 20.0 10 > th dose independent rect. 1 3
132 64.73 atmosphere 1005.0 720 > th dose independent rect. 19 3
134 64.73 atmosphere 995.0 90 > th dose independent rect. 24 17
136 64.73 radiation 1.0 10 < th dose dependent rect. 17 8
139 64.77 atmosphere 995.0 90 > th dose independent rect. 17 7
145 64.79 radiation 10.0 90 < th dose dependent rect. 16 8
152 64.83 temperature 30.0 90 < th dose independent rect. 24 17
160 64.87 temperature 20.0 10 < th dose independent rect. 17 15
167 64.88 temperature 10.0 10 > th dose dependent rect. 14 14
170 64.90 temperature 20.0 10 < th dose independent rect. 17 13
183 64.94 temperature 20.0 90 < th dose independent rect. 17 13
192 64.97 atmosphere 1015.0 90 < th dose independent rect. 24 17
193 64.98 temperature 10.0 90 > th dose independent rect. 17 7
194 64.98 radiation 20.0 90 < th dose independent rect. 17 7
205 65.02 atmosphere 995.0 10 > th dose independent rect. 1 16
206 65.02 atmosphere 1005.0 10 > th dose independent rect. 17 20
228 65.08 atmosphere 1015.0 90 < th dose dependent rect. 24 17
233 65.10 atmosphere 995.0 10 > th dose independent rect. 17 8
237 65.11 wind 9.0 90 < th dose independent rect. 17 7
255 65.17 humidity 50.0 90 > th dose independent rect. 17 7
257 65.17 atmosphere 1015.0 10 < th dose dependent rect. 24 17
258 65.18 radiation 1.0 1440 > th dose independent rect. 11 4
263 65.19 precipitation 0.1 90 < th dose independent rect. 24 17
264 65.19 precipitation 0.1 90 < th dose dependent rect. 24 17
266 65.20 atmosphere 995.0 270 > th dose dependent rect. 17 17
275 65.23 temperature 20.0 10 < th dose independent sin 11 NA
289 65.26 wind 9.0 10 < th dose independent rect. 1 16
293 65.27 temperature 30.0 90 < th dose independent rect. 13 4
298 65.28 atmosphere 1005.0 270 > th dose independent sin 11 NA
304 65.30 radiation 1.0 1440 < th dose independent rect. 11 1
305 65.30 radiation 1.0 1440 < th dose dependent rect. 11 1
307 65.31 atmosphere 1005.0 720 > th dose independent sin 15 NA
312 65.33 precipitation 0.1 90 < th dose independent rect. 17 7
314 65.33 precipitation 0.1 90 < th dose dependent rect. 17 7
321 65.36 atmosphere 1000.0 30 > th dose dependent sin 8 NA
322 65.36 radiation 30.0 10 < th dose dependent rect. 17 8
342 65.41 temperature 30.0 90 < th dose independent rect. 17 7
348 65.43 temperature 20.0 90 < th dose independent sin 12 NA
351 65.43 temperature 10.0 10 > th dose independent rect. 17 8
352 65.43 radiation 20.0 10 < th dose independent rect. 17 8
355 65.43 temperature 10.0 10 > th dose independent rect. 1 16
357 65.43 atmosphere 1015.0 10 < th dose independent rect. 1 16
362 65.45 wind 9.0 10 < th dose independent rect. 17 8
408 65.59 precipitation 0.1 10 < th dose independent rect. 17 8
410 65.59 precipitation 0.1 10 < th dose dependent rect. 17 8
413 65.60 temperature 20.0 90 > th dose independent rect. 23 11
415 65.60 temperature 20.0 10 > th dose independent rect. 23 19
456 65.70 atmosphere 1015.0 270 < th dose independent rect. 12 14
463 65.71 wind 1.0 270 > th dose independent rect. 15 21
472 65.72 humidity 50.0 10 > th dose independent rect. 14 14
562 65.86 temperature 30.0 90 < th dose dependent rect. 17 14
586 65.90 humidity 50.0 90 > th dose independent rect. 13 4
588 65.90 precipitation 0.1 90 < th dose independent rect. 4 10
591 65.90 precipitation 0.1 10 < th dose independent rect. 1 16
592 65.90 precipitation 0.1 90 < th dose dependent rect. 4 10
594 65.90 precipitation 0.1 10 < th dose dependent rect. 1 16
614 65.93 wind 3.0 270 > th dose independent rect. 12 3
661 66.00 humidity 90.0 90 < th dose independent rect. 13 4
664 66.00 atmosphere 995.0 90 > th dose dependent rect. 13 4
668 66.01 wind 1.0 90 > th dose dependent rect. 13 4
688 66.04 wind 1.0 270 > th dose independent rect. 17 12
693 66.04 temperature 20.0 90 > th dose independent rect. 12 23
709 66.07 temperature 10.0 90 > th dose independent rect. 4 10
710 66.07 atmosphere 995.0 90 > th dose independent rect. 4 10
712 66.07 atmosphere 1015.0 90 < th dose independent rect. 4 10
727 66.08 temperature 30.0 270 < th dose dependent rect. 19 1
741 66.11 temperature 20.0 10 > th dose independent rect. 23 11
745 66.12 wind 3.0 270 > th dose independent rect. 13 1
760 66.13 wind 3.0 270 > th dose independent rect. 11 5
762 66.13 precipitation 0.1 10 < th dose independent rect. 4 10
766 66.13 precipitation 0.1 10 < th dose dependent rect. 4 10
821 66.22 humidity 60.0 270 > th dose independent rect. 11 6
828 66.23 temperature 10.0 1440 > th dose independent rect. 18 8
832 66.23 humidity 50.0 1440 > th dose independent rect. 18 8
834 66.23 radiation 20.0 1440 < th dose independent rect. 18 8
848 66.23 temperature 10.0 1440 > th dose independent rect. 2 16
890 66.28 radiation 40.0 10 < th dose independent rect. 14 14
895 66.29 temperature 10.0 270 > th dose independent rect. 17 5
900 66.29 temperature 10.0 10 > th dose independent rect. 4 10
902 66.29 atmosphere 995.0 10 > th dose independent rect. 4 10
903 66.29 atmosphere 1015.0 10 < th dose independent rect. 4 10
939 66.33 humidity 90.0 270 < th dose independent rect. 11 6
947 66.34 wind 9.0 10 < th dose independent rect. 14 14
953 66.35 radiation 1.0 1440 < th dose dependent rect. 11 5
961 66.36 atmosphere 995.0 270 > th dose dependent rect. 13 1
964 66.37 wind 9.0 270 < th dose independent rect. 17 5
981 66.39 wind 9.0 90 < th dose independent rect. 4 10
996 66.40 temperature 20.0 90 > th dose independent rect. 7 21