BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0817000 Os01g0817000|AK072492
(305 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0817000 Protein of unknown function DUF607 family protein 476 e-135
Os11g0124500 Protein of unknown function DUF607 family protein 214 7e-56
Os12g0122100 Protein of unknown function DUF607 family protein 214 9e-56
Os10g0501500 Protein of unknown function DUF607 family protein 144 1e-34
Os03g0233000 Protein of unknown function DUF607 family protein 98 8e-21
>Os01g0817000 Protein of unknown function DUF607 family protein
Length = 305
Score = 476 bits (1225), Expect = e-135, Method: Compositional matrix adjust.
Identities = 243/305 (79%), Positives = 243/305 (79%)
Query: 1 MSMWRFSRSLLRXXXXXXXXXXXXXXXXXXXXXXXXRRWVTPRELQRCWYASLPXXXXXV 60
MSMWRFSRSLLR RRWVTPRELQRCWYASLP V
Sbjct: 1 MSMWRFSRSLLRAAATTTTATAACASASTAGKHAASRRWVTPRELQRCWYASLPAAAAAV 60
Query: 61 PGKDGEAEVTAEEARRLMRLANVEALKRKLGDGEVIPYAELLXXXXXXXXXXXXXXXXXX 120
PGKDGEAEVTAEEARRLMRLANVEALKRKLGDGEVIPYAELL
Sbjct: 61 PGKDGEAEVTAEEARRLMRLANVEALKRKLGDGEVIPYAELLRACEEAGAARTRAEAAAL 120
Query: 121 XXXXXXXXVVLLFRDKVYLQPDKIVDLVRKAMPLALTPEDDPRKEELKKLQTQLEDINKL 180
VVLLFRDKVYLQPDKIVDLVRKAMPLALTPEDDPRKEELKKLQTQLEDINKL
Sbjct: 121 AGALDEAGVVLLFRDKVYLQPDKIVDLVRKAMPLALTPEDDPRKEELKKLQTQLEDINKL 180
Query: 181 AHKQVRRILWSGLGFLITQVGLFFRLTFWEFSWDVMEPIXXXXXXXGLVVGYAYFLITSR 240
AHKQVRRILWSGLGFLITQVGLFFRLTFWEFSWDVMEPI GLVVGYAYFLITSR
Sbjct: 181 AHKQVRRILWSGLGFLITQVGLFFRLTFWEFSWDVMEPITFFTTTTGLVVGYAYFLITSR 240
Query: 241 DPTYRDFMERLFESRQKKLIQRQNFNLDRYLELQRRCKGPLEKMCGTNQTPNPDMAHLHE 300
DPTYRDFMERLFESRQKKLIQRQNFNLDRYLELQRRCKGPLEKMCGTNQTPNPDMAHLHE
Sbjct: 241 DPTYRDFMERLFESRQKKLIQRQNFNLDRYLELQRRCKGPLEKMCGTNQTPNPDMAHLHE 300
Query: 301 LSVNK 305
LSVNK
Sbjct: 301 LSVNK 305
>Os11g0124500 Protein of unknown function DUF607 family protein
Length = 151
Score = 214 bits (545), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 99/139 (71%), Positives = 118/139 (84%)
Query: 144 IVDLVRKAMPLALTPEDDPRKEELKKLQTQLEDINKLAHKQVRRILWSGLGFLITQVGLF 203
+V+LVR+A+PLAL+PE+D RKEELKKLQ + E+I+KLAHKQVRRILWSGLGF + QVGLF
Sbjct: 1 VVELVRRAVPLALSPENDSRKEELKKLQEKKEEIDKLAHKQVRRILWSGLGFFMCQVGLF 60
Query: 204 FRLTFWEFSWDVMEPIXXXXXXXGLVVGYAYFLITSRDPTYRDFMERLFESRQKKLIQRQ 263
FRLTFWEFSWDVMEPI GL+VGYAYFLITSRDPTY DFMERL+ SR +KL +
Sbjct: 61 FRLTFWEFSWDVMEPIAFFTTASGLLVGYAYFLITSRDPTYEDFMERLYLSRHRKLCAKN 120
Query: 264 NFNLDRYLELQRRCKGPLE 282
+F++ +YLELQ+ CK PLE
Sbjct: 121 SFDMAKYLELQKHCKCPLE 139
>Os12g0122100 Protein of unknown function DUF607 family protein
Length = 151
Score = 214 bits (544), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 99/139 (71%), Positives = 119/139 (85%)
Query: 144 IVDLVRKAMPLALTPEDDPRKEELKKLQTQLEDINKLAHKQVRRILWSGLGFLITQVGLF 203
+V+LVR+A+PLAL+PE+D RKEELKKLQ + E+I+KLAHKQVRRILWSGLGF + QVGLF
Sbjct: 1 VVELVRRAVPLALSPENDSRKEELKKLQEKKEEIDKLAHKQVRRILWSGLGFFMCQVGLF 60
Query: 204 FRLTFWEFSWDVMEPIXXXXXXXGLVVGYAYFLITSRDPTYRDFMERLFESRQKKLIQRQ 263
FRLTFWEFSWDVMEPI GL+VGYAYFLITSRDPTY DFMERL+ SR +KL +
Sbjct: 61 FRLTFWEFSWDVMEPIAFFTTASGLLVGYAYFLITSRDPTYEDFMERLYLSRHRKLCAKN 120
Query: 264 NFNLDRYLELQRRCKGPLE 282
+F++++YLELQ+ CK PLE
Sbjct: 121 SFDMEKYLELQKHCKCPLE 139
>Os10g0501500 Protein of unknown function DUF607 family protein
Length = 336
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 10/221 (4%)
Query: 67 AEVTAEEARRLMRLANVEALKRKL---GDGEVIPYAELLXXXXXXXXXXXXXXXXXXXXX 123
A +T EEAR+++R +EA + +L G G V PYAE L
Sbjct: 90 AGLTVEEARKVLRATQMEAARARLRASGAGTV-PYAEFLRLCCDAAGAESGASVARALDE 148
Query: 124 XXXXXVVLLFRDKVYLQPDKIVDLVRKAMPLALTPE---DDPRKEELKKLQTQLEDINKL 180
V++ V+L+P+ +V + KA+P+ D P +EELK ++ Q +I++
Sbjct: 149 SGS---VIVLGKTVFLRPEMVVKAIEKAIPIPRAQPIALDGPAREELKAMEAQKVEIDRT 205
Query: 181 AHKQVRRILWSGLGFLITQVGLFFRLTFWEFSWDVMEPIXXXXXXXGLVVGYAYFLITSR 240
A QVRR LW GL +L+ Q F RLTFWE SWDVMEPI + GY +FL T +
Sbjct: 206 AALQVRRELWLGLAYLVVQTAGFMRLTFWELSWDVMEPICFYVTSMYFMAGYTFFLRTKK 265
Query: 241 DPTYRDFMERLFESRQKKLIQRQNFNLDRYLELQRRCKGPL 281
+P++ F E F ++QK+L+ ++F+L RY EL+R C P+
Sbjct: 266 EPSFEGFFESRFAAKQKRLMHARDFDLRRYDELRRACGLPV 306
>Os03g0233000 Protein of unknown function DUF607 family protein
Length = 350
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 103/239 (43%), Gaps = 15/239 (6%)
Query: 54 PXXXXXVPGKDGEAEVTAEEARRLMRLANVEALKRKLGDG--EVIPYAELLXXXXXXXXX 111
P P ++ VT EEAR++ R A +E + +L V+ +E
Sbjct: 91 PTTAVTRPPEEEGVGVTVEEARKVARAAEMEVARARLRSNAQSVVSGSEF--AALCVDIA 148
Query: 112 XXXXXXXXXXXXXXXXXVVLLFRDKVYLQPDKIVDLVRKAMPLALTPEDDPRKEELKKLQ 171
VV++ D V+L+PD I + +P + +
Sbjct: 149 GGAEGGRRLARALDDSGVVIVLGDAVFLRPDMIAKAIGSMIPATAHATRAAASVVEVRKK 208
Query: 172 TQL-----------EDINKLAHKQVRRILWSGLGFLITQVGLFFRLTFWEFSWDVMEPIX 220
+ I+ A QVRR LW GLG L Q F RLTFWE SWDVMEP+
Sbjct: 209 REEEEELRAMEEEKAGIDAAAAAQVRRELWCGLGLLAAQTLGFMRLTFWELSWDVMEPVC 268
Query: 221 XXXXXXGLVVGYAYFLITSRDPTYRDFMERLFESRQKKLIQRQNFNLDRYLELQRRCKG 279
+ GYA+F+ TS +P++ F SRQ++L++ ++F++ RY L+ + G
Sbjct: 269 FYVTSLYFMSGYAFFMRTSTEPSFEGFYRSRLASRQRRLMRARSFDVARYEALKEQVGG 327
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.140 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,249,986
Number of extensions: 274146
Number of successful extensions: 855
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 851
Number of HSP's successfully gapped: 5
Length of query: 305
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 205
Effective length of database: 11,814,401
Effective search space: 2421952205
Effective search space used: 2421952205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 156 (64.7 bits)