BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0226200 Os03g0226200|AK121522
(169 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0226200 Non-symbiotic hemoglobin 2 (rHb2) (ORYsa GLB1b) 348 1e-96
Os03g0233900 Non-symbiotic hemoglobin 1 (rHb1) (ORYsa GLB1a) 314 2e-86
Os03g0234000 Non-symbiotic hemoglobin 3 (rHb3) (ORYsa GLB1c) 283 4e-77
Os03g0234100 Similar to Non-symbiotic hemoglobin 4 (rHb4) (... 267 2e-72
Os05g0517600 Similar to Non-symbiotic hemoglobin 1 (rHb1) (... 193 6e-50
>Os03g0226200 Non-symbiotic hemoglobin 2 (rHb2) (ORYsa GLB1b)
Length = 169
Score = 348 bits (892), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 169/169 (100%), Positives = 169/169 (100%)
Query: 1 MALVEGNNGVSGGAVSFSEEQEALVLKSWAIMKKDSANIGLRFFLKIFEVAPSASQMFSF 60
MALVEGNNGVSGGAVSFSEEQEALVLKSWAIMKKDSANIGLRFFLKIFEVAPSASQMFSF
Sbjct: 1 MALVEGNNGVSGGAVSFSEEQEALVLKSWAIMKKDSANIGLRFFLKIFEVAPSASQMFSF 60
Query: 61 LRNSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHFKYGVGDA 120
LRNSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHFKYGVGDA
Sbjct: 61 LRNSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHFKYGVGDA 120
Query: 121 HFEVTRFALLETIKEAVPVDMWSPAMKSAWSEAYNQLVAAIKQEMKPAE 169
HFEVTRFALLETIKEAVPVDMWSPAMKSAWSEAYNQLVAAIKQEMKPAE
Sbjct: 121 HFEVTRFALLETIKEAVPVDMWSPAMKSAWSEAYNQLVAAIKQEMKPAE 169
>Os03g0233900 Non-symbiotic hemoglobin 1 (rHb1) (ORYsa GLB1a)
Length = 166
Score = 314 bits (804), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 154/169 (91%), Positives = 158/169 (93%), Gaps = 3/169 (1%)
Query: 1 MALVEGNNGVSGGAVSFSEEQEALVLKSWAIMKKDSANIGLRFFLKIFEVAPSASQMFSF 60
MALVE NN V AVSFSEEQEALVLKSWAI+KKDSANI LRFFLKIFEVAPSASQMFSF
Sbjct: 1 MALVEDNNAV---AVSFSEEQEALVLKSWAILKKDSANIALRFFLKIFEVAPSASQMFSF 57
Query: 61 LRNSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHFKYGVGDA 120
LRNSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATH KYGVGDA
Sbjct: 58 LRNSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHLKYGVGDA 117
Query: 121 HFEVTRFALLETIKEAVPVDMWSPAMKSAWSEAYNQLVAAIKQEMKPAE 169
HFEV +FALL+TIKE VP DMWSPAMKSAWSEAY+ LVAAIKQEMKPAE
Sbjct: 118 HFEVVKFALLDTIKEEVPADMWSPAMKSAWSEAYDHLVAAIKQEMKPAE 166
>Os03g0234000 Non-symbiotic hemoglobin 3 (rHb3) (ORYsa GLB1c)
Length = 169
Score = 283 bits (725), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 136/163 (83%), Positives = 146/163 (89%)
Query: 6 GNNGVSGGAVSFSEEQEALVLKSWAIMKKDSANIGLRFFLKIFEVAPSASQMFSFLRNSD 65
G+N VS GAV F+EEQEALVLKSWAIMK DSA+IG RFFLKIFEVAPSA Q+FSFLRNSD
Sbjct: 5 GSNVVSRGAVRFTEEQEALVLKSWAIMKNDSAHIGHRFFLKIFEVAPSARQLFSFLRNSD 64
Query: 66 VPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHFKYGVGDAHFEVT 125
VPLEKNPKLK HAM+VFVMTCEAAAQLRK G+VTVRDTT+KRLG+THFK GV DAHFEV
Sbjct: 65 VPLEKNPKLKIHAMAVFVMTCEAAAQLRKTGRVTVRDTTIKRLGSTHFKNGVSDAHFEVA 124
Query: 126 RFALLETIKEAVPVDMWSPAMKSAWSEAYNQLVAAIKQEMKPA 168
+FALLETIKEAVP MWSPAMK AW EAY+ LVAAIKQ MKPA
Sbjct: 125 KFALLETIKEAVPASMWSPAMKGAWGEAYDHLVAAIKQGMKPA 167
>Os03g0234100 Similar to Non-symbiotic hemoglobin 4 (rHb4) (ORYsa GLB1d)
Length = 167
Score = 267 bits (683), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 126/157 (80%), Positives = 136/157 (86%)
Query: 11 SGGAVSFSEEQEALVLKSWAIMKKDSANIGLRFFLKIFEVAPSASQMFSFLRNSDVPLEK 70
S GAV F+EEQEALVLKSWAIMK DSANIG RFFLKIFEVAPSA +FSFLRNSDVPLEK
Sbjct: 7 SNGAVRFTEEQEALVLKSWAIMKDDSANIGHRFFLKIFEVAPSARHLFSFLRNSDVPLEK 66
Query: 71 NPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHFKYGVGDAHFEVTRFALL 130
NP LK HAM+VFVMTCEAAAQLRK G+VTVRDTT+KRLG+THFK GV D HFEV RFALL
Sbjct: 67 NPNLKKHAMAVFVMTCEAAAQLRKTGRVTVRDTTIKRLGSTHFKNGVSDTHFEVARFALL 126
Query: 131 ETIKEAVPVDMWSPAMKSAWSEAYNQLVAAIKQEMKP 167
ETIK+ +P MWSP MK+AW EAY LVAAIK+ MKP
Sbjct: 127 ETIKDGIPASMWSPEMKNAWGEAYEHLVAAIKEGMKP 163
>Os05g0517600 Similar to Non-symbiotic hemoglobin 1 (rHb1) (ORYsa GLB1a)
Length = 145
Score = 193 bits (490), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 98/156 (62%), Positives = 117/156 (75%), Gaps = 14/156 (8%)
Query: 15 VSFSEEQEALVLKSWAIMKKDSANIGLRFFLKIFEVAPSASQMFSFLRNS--DVPLEKNP 72
+ FSE QE LVL+SW MKKDS +I L+FFL+IFE+AP+A QMFSFLR+S DVPLE +P
Sbjct: 1 MGFSETQEELVLRSWQSMKKDSESIALKFFLRIFEIAPAAKQMFSFLRDSGDDVPLENHP 60
Query: 73 KLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHFKYGVGDAHFEVTRFALLET 132
K CE+A QLRK G V VR+ TL+RLGATH K GV DA+FEV + ALL+T
Sbjct: 61 K-----------ACESATQLRKTGDVKVREATLRRLGATHVKAGVADAYFEVVKTALLDT 109
Query: 133 IKEAVPVDMWSPAMKSAWSEAYNQLVAAIKQEMKPA 168
IK+AVP +MWSP MK AW EAY+QL AAIK+EMK A
Sbjct: 110 IKDAVP-EMWSPEMKGAWEEAYDQLAAAIKEEMKKA 144
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.129 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,280,209
Number of extensions: 175116
Number of successful extensions: 422
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 420
Number of HSP's successfully gapped: 5
Length of query: 169
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 75
Effective length of database: 12,127,685
Effective search space: 909576375
Effective search space used: 909576375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 152 (63.2 bits)