BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0219100 Os03g0219100|AK107170
(438 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0219100 Phosphatidylinositol transfer protein-like, N-... 765 0.0
Os02g0752000 Cellular retinaldehyde-binding/triple function... 84 3e-16
Os01g0264700 Cellular retinaldehyde binding/alpha-tocophero... 82 8e-16
Os03g0724100 Cellular retinaldehyde binding/alpha-tocophero... 81 2e-15
Os01g0926800 Phosphatidylinositol transfer protein-like, N-... 79 7e-15
>Os03g0219100 Phosphatidylinositol transfer protein-like, N-terminal domain
containing protein
Length = 438
Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/423 (90%), Positives = 382/423 (90%)
Query: 1 MAMEKVDAKEREKIEAVRKTLRKQAPLTAKQAMYCNDACVERFLRARGESVKKAAKHLRT 60
MAMEKVDAKEREKIEAVRKTLRKQAPLTAKQAMYCNDACVERFLRARGESVKKAAKHLRT
Sbjct: 1 MAMEKVDAKEREKIEAVRKTLRKQAPLTAKQAMYCNDACVERFLRARGESVKKAAKHLRT 60
Query: 61 VLSWRDTIGADHIIADEFSAELADGVAYVAGHDDEARPVVVFRIKQDYPKFHSQKSFVRL 120
VLSWRDTIGADHIIADEFSAELADGVAYVAGHDDEARPVVVFRIKQDYPKFHSQKSFVRL
Sbjct: 61 VLSWRDTIGADHIIADEFSAELADGVAYVAGHDDEARPVVVFRIKQDYPKFHSQKSFVRL 120
Query: 121 LVFTLEVAVSCMSRFVDQFVXXXXXXXXXXXXXXXXXXMGTLKIVADYYPGRLHRAFVID 180
LVFTLEVAVSCMSRFVDQFV MGTLKIVADYYPGRLHRAFVID
Sbjct: 121 LVFTLEVAVSCMSRFVDQFVLLFDASFFRSASAFLNLLMGTLKIVADYYPGRLHRAFVID 180
Query: 181 PPSLFSVLWKGVRPFVELAPATAVVCSLDFEDSLEDASFTAYPRTASLRFEPAAALLATG 240
PPSLFSVLWKGVRPFVELAPATAVVCSLDFEDSLEDASFTAYPRTASLRFEPAAALLATG
Sbjct: 181 PPSLFSVLWKGVRPFVELAPATAVVCSLDFEDSLEDASFTAYPRTASLRFEPAAALLATG 240
Query: 241 TKGIGVGSASSRFSVTVSHDNTLKPWYLSTTTPSSVGPRSVVPTSSPSLIGXXXXXXXXX 300
TKGIGVGSASSRFSVTVSHDNTLKPWYLSTTTPSSVGPRSVVPTSSPSLIG
Sbjct: 241 TKGIGVGSASSRFSVTVSHDNTLKPWYLSTTTPSSVGPRSVVPTSSPSLIGASPLSARSF 300
Query: 301 XXXXXXXXXXXXXXVHRGAPLTPFSTKGGQKAPAPAQQFPRTPRPSFLQSPSMLFAFKKD 360
VHRGAPLTPFSTKGGQKAPAPAQQFPRTPRPSFLQSPSMLFAFKKD
Sbjct: 301 SFASPAARSTTTPPVHRGAPLTPFSTKGGQKAPAPAQQFPRTPRPSFLQSPSMLFAFKKD 360
Query: 361 GQASRGERERESFLPFLRFYRRPYDEISYRAKMRPPLGGLIAIVDEKSKQHKTVQPPLRR 420
GQASRGERERESFLPFLRFYRRPYDEISYRAKMRPPLGGLIAIVDEKSKQHKTVQPPLRR
Sbjct: 361 GQASRGERERESFLPFLRFYRRPYDEISYRAKMRPPLGGLIAIVDEKSKQHKTVQPPLRR 420
Query: 421 HAG 423
HAG
Sbjct: 421 HAG 423
>Os02g0752000 Cellular retinaldehyde-binding/triple function, N-terminal domain
containing protein
Length = 378
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 81/187 (43%), Gaps = 8/187 (4%)
Query: 13 KIEAVRKTLRKQAPLTAKQAMYCNDACVERFLRARGESVKKAAKHLRTVLSWRDTIGADH 72
KI VR L L+ K A+YC+DA + R+L AR VKKA K L+ L WR D
Sbjct: 24 KIGEVRAAL---GQLSGKAALYCSDASIARYLVARNWEVKKATKMLKKTLKWRSEYKPDE 80
Query: 73 IIADEFSAELADGVAYVAGH-DDEARPVVVFRIK-QDYPKFHSQKSFVRLLVFTLEVAVS 130
I DE + E A G Y + D R ++V R Q+ K Q +R LV+ +E A+
Sbjct: 81 IRWDEIANEAATGKIYRTDYFDKSGRSILVMRPGVQNTKKAKGQ---IRYLVYCMENAIL 137
Query: 131 CMSRFVDQFVXXXXXXXXXXXXXXXXXXMGTLKIVADYYPGRLHRAFVIDPPSLFSVLWK 190
+ Q V T ++ +YP RL A + + P F WK
Sbjct: 138 NLPHDQSQMVWLIDFAGFSLSNISLHVTKLTADVLQGHYPERLGVAILYNAPKFFESFWK 197
Query: 191 GVRPFVE 197
P +E
Sbjct: 198 IASPILE 204
>Os01g0264700 Cellular retinaldehyde binding/alpha-tocopherol transport family
protein
Length = 311
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 94/193 (48%), Gaps = 11/193 (5%)
Query: 9 KEREKIEAVRKTLRKQAPLTAKQAMYCNDACVERFLRARGESVKKAAKHLRTVLSWRDTI 68
+++EKI +RK L + + + + +DA RFLRAR +V+KA+K +++ + WR +
Sbjct: 21 EQQEKINDLRKELGEHSSEEIQD--FLSDASCLRFLRARNWNVQKASKMMKSAVKWRVSY 78
Query: 69 GADHIIADEFSAELADGVAYVAGHDDE-ARPVVVFRIKQDYPKFH---SQKSFVRLLVFT 124
I D+ + E G Y A + D+ R V+V R P S K ++ LV+
Sbjct: 79 MPQKINWDDVAHEAETGKIYRADYKDKHGRTVLVLR-----PGLENTTSGKGQIKYLVYC 133
Query: 125 LEVAVSCMSRFVDQFVXXXXXXXXXXXXXXXXXXMGTLKIVADYYPGRLHRAFVIDPPSL 184
LE A+ ++ ++ V T+ ++ D YP RL A + +PP +
Sbjct: 134 LEKAIMSLTEDQEKMVWLTDFQSWTLGSTPLKVTRETVNVLQDCYPERLGLAILYNPPRI 193
Query: 185 FSVLWKGVRPFVE 197
F WK V+PF++
Sbjct: 194 FESFWKIVKPFLD 206
>Os03g0724100 Cellular retinaldehyde binding/alpha-tocopherol transport family
protein
Length = 299
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 89/195 (45%), Gaps = 10/195 (5%)
Query: 7 DAKERE-KIEAVRKTLRKQAPLTAKQAMYCNDACVERFLRARGESVKKAAKHLRTVLSWR 65
D +++E KI+ +R L PL++ YC +AC+ R+L AR +V K+ K L L WR
Sbjct: 16 DIEQQEAKIQELRAAL---GPLSSSGKKYCTEACLRRYLEARNWNVDKSRKMLEESLKWR 72
Query: 66 DTIGADHIIADEFSAELADGVAYVAGH-DDEARPVVVFR-IKQDYPKFHSQKSFVRLLVF 123
+ I E S E G Y A D E R VV+ R KQ+ Q VR LV+
Sbjct: 73 TAYRPEDIRWPEISVESETGKMYRASFVDREGRTVVIMRPAKQNTSSHEGQ---VRFLVY 129
Query: 124 TLEVAVSCMSRFVDQFVXXXXXXXXXXXXXX-XXXXMGTLKIVADYYPGRLHRAFVIDPP 182
TLE A+ + ++ V I+ ++YP RL + +PP
Sbjct: 130 TLENAILSLPEDQEKMVWLIDFTGWTLANATPIKTARECANILQNHYPERLAIGILFNPP 189
Query: 183 SLFSVLWKGVRPFVE 197
+F WK V+ F++
Sbjct: 190 KVFEAFWKVVKHFLD 204
>Os01g0926800 Phosphatidylinositol transfer protein-like, N-terminal domain
containing protein
Length = 247
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 19/200 (9%)
Query: 7 DAKERE--KIEAVRKTLRKQAPLTAKQAMYCNDACVERFLRARGESVKKAAKHLRTVLSW 64
DA E E K+ +R T+ Q P A ++ + RFLRAR +V+KA+ L L W
Sbjct: 8 DAGEGEWLKVAELRATVEAQDP----HAKEVDNLTLRRFLRARDHNVEKASAMLLKALRW 63
Query: 65 R-DTIGADHIIADEFSAELADGVAYVAGHDDEARPVVV------FRIKQDYPKFHSQKSF 117
R + + + ++ ++L D Y+ G D RP+++ F K+D PKF S
Sbjct: 64 RREAVPGGSVPEEKVQSDLDDDKVYMGGADRTGRPILLAFPAKHFSAKRDMPKFKS---- 119
Query: 118 VRLLVFTLEVAVSCMSRFVDQFVXXXXXXXXXXXXXXXXXXMGTLKIVADYYPGRLHRAF 177
V+ L+ + + R ++FV + ++I+ +YYP RL +A
Sbjct: 120 --YCVYLLDSICARIPRGQEKFVCIVDLKGWGYSNCDIRAYIAAIEIMQNYYPERLGKAL 177
Query: 178 VIDPPSLFSVLWKGVRPFVE 197
+I P +F WK + PF++
Sbjct: 178 MIHVPYMFMKAWKMIYPFID 197
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,706,890
Number of extensions: 556194
Number of successful extensions: 1635
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1632
Number of HSP's successfully gapped: 6
Length of query: 438
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 334
Effective length of database: 11,605,545
Effective search space: 3876252030
Effective search space used: 3876252030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)