BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0202200 Os03g0202200|AK121020
(277 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0202200 Porin-like protein 518 e-147
Os09g0361400 Outer mitochondrial membrane protein porin (Vo... 233 9e-62
Os03g0137500 Similar to VDAC3.1 231 6e-61
Os05g0536200 Voltage-dependent anion channel 207 7e-54
Os01g0588200 Voltage-dependent anion channel 206 1e-53
Os01g0715500 Similar to Voltage-dependent anion channel 172 2e-43
Os02g0473100 102 2e-22
Os04g0107750 102 3e-22
Os02g0318300 100 2e-21
>Os03g0202200 Porin-like protein
Length = 277
Score = 518 bits (1334), Expect = e-147, Method: Compositional matrix adjust.
Identities = 261/277 (94%), Positives = 261/277 (94%)
Query: 1 MAMKGPGLFSDIGKRAKDLLTKDYTYDQKXXXXXXXXXXXXXXXXAVKKGGLYTLDVSSV 60
MAMKGPGLFSDIGKRAKDLLTKDYTYDQK AVKKGGLYTLDVSSV
Sbjct: 1 MAMKGPGLFSDIGKRAKDLLTKDYTYDQKLTVSTVSSSGVGLTSTAVKKGGLYTLDVSSV 60
Query: 61 YKYKSTLVDVKVDTESNISTTLTVFDVLPSTKLVTSVKLPDYNSGKVEMQYFHENASFAT 120
YKYKSTLVDVKVDTESNISTTLTVFDVLPSTKLVTSVKLPDYNSGKVEMQYFHENASFAT
Sbjct: 61 YKYKSTLVDVKVDTESNISTTLTVFDVLPSTKLVTSVKLPDYNSGKVEMQYFHENASFAT 120
Query: 121 AVGMKPSPVVEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAIGVTKPDYHAAIVLADKG 180
AVGMKPSPVVEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAIGVTKPDYHAAIVLADKG
Sbjct: 121 AVGMKPSPVVEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAIGVTKPDYHAAIVLADKG 180
Query: 181 DTVKVSGVYHLDDKQKSSVVAELTRRLSTNENTLTVGGLYKVDPETAVKARLNNTGKLAA 240
DTVKVSGVYHLDDKQKSSVVAELTRRLSTNENTLTVGGLYKVDPETAVKARLNNTGKLAA
Sbjct: 181 DTVKVSGVYHLDDKQKSSVVAELTRRLSTNENTLTVGGLYKVDPETAVKARLNNTGKLAA 240
Query: 241 LLQHEVKPKSVLTISGEFDTKALDRPPKFGLALALRP 277
LLQHEVKPKSVLTISGEFDTKALDRPPKFGLALALRP
Sbjct: 241 LLQHEVKPKSVLTISGEFDTKALDRPPKFGLALALRP 277
>Os09g0361400 Outer mitochondrial membrane protein porin (Voltage-dependent
anion- selective channel protein) (VDAC)
Length = 274
Score = 233 bits (595), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 122/275 (44%), Positives = 172/275 (62%), Gaps = 1/275 (0%)
Query: 3 MKGPGLFSDIGKRAKDLLTKDYTYDQKXXXXXXXXXXXXXXXXAVKKGGLYTLDVSSVYK 62
M GPGL+ +IGK+A+DLL +DY D K + KK L ++ S K
Sbjct: 1 MVGPGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIK 60
Query: 63 YKSTLVDVKVDTESNISTTLTVFDVLPSTKLVTSVKLPDYNSGKVEMQYFHENASFATAV 122
K+ VDVK +++SN+ TT+TV ++ P K + S +PD SGK E+QY H+ A + ++
Sbjct: 61 NKNITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASI 120
Query: 123 GMKPSPVVEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAIGVTKPDYHAAIVLADKGDT 182
G+ SPVV S G + LA GA+ DTATG TKY+A + + D A++ L +KGD+
Sbjct: 121 GLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDS 180
Query: 183 VKVSGVYHLDDKQKSSVVAELTRRLSTNENTLTVGGLYKVDPETAVKARLNNTGKLAALL 242
+ S YH+ + ++V AELT S+NEN+LT G + +DP T VKAR NN+GK +ALL
Sbjct: 181 LTAS-YYHIVNHSATAVGAELTHSFSSNENSLTFGTQHTLDPLTVVKARFNNSGKASALL 239
Query: 243 QHEVKPKSVLTISGEFDTKALDRPPKFGLALALRP 277
QHE +PKSV TIS E DTKA+D+ K G+A+AL+P
Sbjct: 240 QHEWRPKSVWTISAEVDTKAIDKSSKVGIAVALKP 274
>Os03g0137500 Similar to VDAC3.1
Length = 276
Score = 231 bits (588), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 112/274 (40%), Positives = 171/274 (62%)
Query: 4 KGPGLFSDIGKRAKDLLTKDYTYDQKXXXXXXXXXXXXXXXXAVKKGGLYTLDVSSVYKY 63
KGP F +IGKRAKDLL KDY +DQK VK L+ D+ + +K
Sbjct: 3 KGPAPFLNIGKRAKDLLYKDYNFDQKFSLTTTSNSGLGLTATGVKIDELFIGDIQTQHKS 62
Query: 64 KSTLVDVKVDTESNISTTLTVFDVLPSTKLVTSVKLPDYNSGKVEMQYFHENASFATAVG 123
T VDVK+D+ES +STT+TV + L K S ++PD SGK+++QY H++ + + +G
Sbjct: 63 GKTTVDVKIDSESRVSTTVTVDEALTGLKTSFSFRVPDQKSGKLDLQYLHDHFALNSTIG 122
Query: 124 MKPSPVVEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAIGVTKPDYHAAIVLADKGDTV 183
+ +P++E + T G L+ GAE GFD+ + TKY++ I K D+ AA++LADKG+T+
Sbjct: 123 LTSTPLIELAATIGTNELSAGAEVGFDSTSASVTKYNSGICYNKHDFSAAVLLADKGETL 182
Query: 184 KVSGVYHLDDKQKSSVVAELTRRLSTNENTLTVGGLYKVDPETAVKARLNNTGKLAALLQ 243
K S ++ ++ ++V AE+T +L T EN T+G + +D T +K R +N GK+ L Q
Sbjct: 183 KASYIHTFNETNGATVAAEVTHKLKTKENYFTIGSSHAIDSSTLLKTRFSNGGKVGVLCQ 242
Query: 244 HEVKPKSVLTISGEFDTKALDRPPKFGLALALRP 277
HE +PKS ++IS E+D K + P +FG+A+AL+P
Sbjct: 243 HEWRPKSTVSISAEYDPKVVSSPSRFGVAIALKP 276
>Os05g0536200 Voltage-dependent anion channel
Length = 280
Score = 207 bits (527), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 117/271 (43%), Positives = 158/271 (58%), Gaps = 3/271 (1%)
Query: 8 LFSDIGKRAKDLLTKDYTYDQKXXXXXXXXXXXXXXXXAVKKGGLYTLDVSSVYKYKSTL 67
L+SDIGK+A+DLL +DY DQK KK ++ S K +
Sbjct: 12 LYSDIGKKARDLLYRDYHTDQKFTLTTYAANGAAITVAGTKKNESIFSEIQSQVKNNNVS 71
Query: 68 VDVKVDTESNISTTLTVFDV-LPSTKLVTSVKLPDYNSGKVEMQYFHENASFATAVGMKP 126
VDVK ++S + TT TV D+ P K + S+ P S K E+QY H +A VG+
Sbjct: 72 VDVKATSDSKLITTFTVHDLGTPGLKGILSIPFPYQKSAKAEVQYLHPHAGLNAIVGLNA 131
Query: 127 SPVVEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAIGVTKPDYHAAIVLADKGDTVKVS 186
+P+V FSG G A G + FDTATG FTKY+A + T PD AA++L +KGD++ S
Sbjct: 132 NPLVSFSGVFGTGAFAVGTDVAFDTATGDFTKYNAGLSHTTPDLTAALLLNNKGDSLAAS 191
Query: 187 GVYHLDDKQKSSVVAELTRRLSTNENTLTVGGLYKVDPETAVKARLNNTGKLAALLQHEV 246
Y+ + S+V AEL S+NENTLT G + +D T VKAR NN G +AL+QHE
Sbjct: 192 --YYHKVSKTSAVGAELAHSFSSNENTLTFGTQHALDELTTVKARFNNFGMASALIQHEF 249
Query: 247 KPKSVLTISGEFDTKALDRPPKFGLALALRP 277
+PKS++TIS E DTKA+D+ K GL+L L+P
Sbjct: 250 RPKSLVTISTEVDTKAIDKSSKVGLSLVLKP 280
>Os01g0588200 Voltage-dependent anion channel
Length = 275
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 112/273 (41%), Positives = 165/273 (60%), Gaps = 3/273 (1%)
Query: 6 PGLFSDIGKRAKDLLTKDYTYDQKXXXXXXXXXXXXXXXXAVKKGGLYTLDVSSVYKYKS 65
PGL++DIGK+ +DLL +DY K +K ++ + K K
Sbjct: 3 PGLYTDIGKKTRDLLYRDYGTHHKFTLTTCTPEGVTITAAGTRKNESVFGELQTQLKNKK 62
Query: 66 TLVDVKVDTESNISTTLTVFDV-LPSTKLVTSVKLPDYNSGKVEMQYFHENASFATAVGM 124
VDVK ++ES++ TT+TV + P K + S+ +PD SGK+E+QY HE A +VG+
Sbjct: 63 LTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQRSGKLELQYLHEYAGINASVGL 122
Query: 125 KPSPVVEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAIGVTKPDYHAAIVLADKGDTVK 184
+P+V SG G++ L+ G + FDTAT FTKY+AA+ +T D A++ L + GDT+
Sbjct: 123 NSNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIASLHLNNHGDTL- 181
Query: 185 VSGVYHLDDKQKSSVV-AELTRRLSTNENTLTVGGLYKVDPETAVKARLNNTGKLAALLQ 243
++ YHL ++ V AEL+ S NE+TL G + +DP T VKAR NN G +AL+Q
Sbjct: 182 IASYYHLVKHHSNTAVGAELSHSFSRNESTLIFGSQHSLDPHTTVKARFNNYGMASALVQ 241
Query: 244 HEVKPKSVLTISGEFDTKALDRPPKFGLALALR 276
HE +PKS++TISGE DTKA+++ K GL+L L+
Sbjct: 242 HEWRPKSLITISGEVDTKAIEKSTKVGLSLVLK 274
>Os01g0715500 Similar to Voltage-dependent anion channel
Length = 318
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/281 (37%), Positives = 153/281 (54%), Gaps = 20/281 (7%)
Query: 8 LFSDIGKRAK---------DLLTKDYTYDQKXXXXXXXXXXXXXXXXAVKKGGLYTLDVS 58
L+ +IGK+A+ DLL KD+ DQK + K ++
Sbjct: 47 LYFEIGKKARGVHALFILFDLLYKDFHTDQKFTLTTYTNNGVVITAASTMKDEAIFSEIQ 106
Query: 59 SVYKYKSTLVDVKVDTESNISTTLTVFDV-LPSTKLVTSVKLPDYNSGKVEMQYFHENAS 117
+ K + ++DV TT+T D+ + K + S+ P +GK E+QY H+ A
Sbjct: 107 TKLKSNNVMLDVL--------TTITTEDLGVSGLKQIVSLPFPYQTAGKAELQYLHDYAG 158
Query: 118 FATAVGMKPSPVVEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAIGVTKPDYHAAIVLA 177
+ VG+ P+V SG G + +A GA+ DT+TG FTKY A + + D A + L
Sbjct: 159 ISLGVGLTSKPLVNLSGVFGNKSVAVGADVAVDTSTGDFTKYDAGLTINNSDLAADLTLN 218
Query: 178 DKGDTVKVSGVYHLDDKQKSSVV-AELTRRLSTNENTLTVGGLYKVDPETAVKARLNNTG 236
+KGD++ S YHL +K+ + AELT ST ENTL+ G + +DP T VKAR NN G
Sbjct: 219 NKGDSLTAS-YYHLVNKESGTAAGAELTHSFSTKENTLSFGMQHALDPLTTVKARYNNHG 277
Query: 237 KLAALLQHEVKPKSVLTISGEFDTKALDRPPKFGLALALRP 277
++AL+QHE +PKS LT+S E DTKA+D+ K GL+L L+P
Sbjct: 278 MVSALIQHEWRPKSFLTLSAEVDTKAIDKASKVGLSLVLKP 318
>Os02g0473100
Length = 709
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 71/94 (75%)
Query: 47 VKKGGLYTLDVSSVYKYKSTLVDVKVDTESNISTTLTVFDVLPSTKLVTSVKLPDYNSGK 106
VKKGG TLD+SSV KYK+ ++V T S+IS +LT+F VLPS KLVTS+K+P+YNS +
Sbjct: 615 VKKGGSDTLDLSSVCKYKNAHDSIQVGTVSSISLSLTMFAVLPSKKLVTSIKIPNYNSRQ 674
Query: 107 VEMQYFHENASFATAVGMKPSPVVEFSGTAGAQG 140
+E+Q H++ASF T++GM+ S VV F G+A G
Sbjct: 675 MEVQCIHQSASFVTSIGMESSLVVAFCGSAATLG 708
>Os04g0107750
Length = 476
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 71/94 (75%)
Query: 47 VKKGGLYTLDVSSVYKYKSTLVDVKVDTESNISTTLTVFDVLPSTKLVTSVKLPDYNSGK 106
VKKGG TLD+SSV KYK+ ++V T S+IS +LT+F VLP KLVTS+K+P+YNSG+
Sbjct: 379 VKKGGSDTLDLSSVCKYKNAHDSIQVGTVSSISLSLTMFAVLPYRKLVTSIKIPNYNSGQ 438
Query: 107 VEMQYFHENASFATAVGMKPSPVVEFSGTAGAQG 140
+E+Q H++ASF T++GM+ S VV F G+A G
Sbjct: 439 MEVQCIHQSASFVTSIGMESSLVVAFYGSAATLG 472
>Os02g0318300
Length = 728
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 70/94 (74%)
Query: 47 VKKGGLYTLDVSSVYKYKSTLVDVKVDTESNISTTLTVFDVLPSTKLVTSVKLPDYNSGK 106
VKKGG TLD+SSV KYK+ ++V T S+IS +LT+F VLP KL TS+K+P+YNSG+
Sbjct: 631 VKKGGSDTLDLSSVCKYKNAHDSIQVGTVSSISLSLTIFVVLPYRKLGTSIKIPNYNSGQ 690
Query: 107 VEMQYFHENASFATAVGMKPSPVVEFSGTAGAQG 140
+E+Q H++ASF T++GM+ S VV F G+A G
Sbjct: 691 MEVQCIHQSASFVTSIGMESSLVVAFYGSAATLG 724
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.130 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,053,048
Number of extensions: 285940
Number of successful extensions: 723
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 716
Number of HSP's successfully gapped: 9
Length of query: 277
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 178
Effective length of database: 11,866,615
Effective search space: 2112257470
Effective search space used: 2112257470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 155 (64.3 bits)