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Os03g0137500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to VDAC3.1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.31 (0.0158) R2 : 0.356
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.631 (0.0398) R2dC : 0.355 R2C : 0.356
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0134 (0.0333) R2dN8 : 0.000297 R2N8 : 6e-04
σ : 0.298
deviance : 40.62
__
_____
C
peak time of C : 3.44
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
31.8 0.265 9.28 0.484 0.45 0.528 -0.636 -0.225 0.1 7.95 0.2369 97 -- --
31.95 0.263 9.28 0.478 0.442 0.507 -0.486 -- 0.085 7.63 0.05639 101 -- --
32.66 0.266 9.28 0.469 0.445 0.529 -- -0.00294 0.0955 7.97 0.2504 101 -- --
32.64 0.266 9.28 0.458 0.429 0.49 -- -- 0.0919 7.61 0.2458 103 -- --
35.47 0.277 9.29 0.455 -- 0.588 -- -0.158 0.0855 -- 0.7999 461 -- --
35.94 0.281 9.3 0.417 0.624 -- -0.123 -- 0.0593 3.46 -- -- -- --
35.99 0.281 9.3 0.419 0.623 -- -- -- 0.0601 3.44 -- -- -- --
35.53 0.278 9.29 0.46 -- 0.592 -- -- 0.0794 -- 0.67 461 -- --
38.15 0.288 9.29 -- 0.416 0.46 -- -- 0.0466 7.25 0.38 114 -- --
57.77 0.355 9.3 0.445 -- -- -- -- 0.0766 -- -- -- -- --
40.62 0.298 9.31 -- 0.631 -- -- -- 0.0134 3.44 -- -- -- --
41.32 0.299 9.3 -- -- 0.613 -- -- 0.0438 -- 6.774 468 -- --
63 0.37 9.31 -- -- -- -- -- 0.0272 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.07 temperature 10.0 90 > th dose dependent rect. 19 9
2 30.14 radiation 1.0 90 < th dose dependent sin 12 NA
3 30.38 humidity 50.0 720 > th dose dependent rect. 17 4
4 30.40 temperature 10.0 90 > th dose dependent rect. 4 15
6 30.43 radiation 1.0 90 < th dose independent sin 12 NA
7 30.50 humidity 70.0 720 > th dose independent rect. 17 3
9 30.53 humidity 50.0 270 > th dose dependent rect. 17 10
10 30.54 temperature 20.0 10 > th dose independent rect. 20 9
11 30.56 temperature 10.0 10 > th dose dependent rect. 5 15
13 30.60 temperature 10.0 10 > th dose dependent rect. 20 9
15 30.65 humidity 70.0 720 > th dose independent rect. 17 11
19 30.70 radiation 1.0 90 < th dose dependent rect. 19 21
28 30.79 temperature 15.0 90 > th dose independent rect. 19 9
35 30.88 radiation 1.0 90 < th dose dependent rect. 19 11
41 30.90 radiation 10.0 270 < th dose dependent rect. 17 10
42 30.90 radiation 1.0 270 < th dose dependent rect. 8 19
43 30.93 radiation 1.0 270 < th dose independent rect. 8 19
45 30.94 temperature 15.0 90 > th dose independent rect. 4 15
46 30.94 precipitation 0.1 270 < th dose independent rect. 3 15
47 30.94 precipitation 0.1 270 < th dose dependent rect. 3 15
55 30.98 radiation 1.0 270 < th dose dependent rect. 5 22
61 31.02 radiation 1.0 90 > th dose independent sin 12 NA
63 31.02 radiation 1.0 90 < th dose dependent rect. 19 16
66 31.04 radiation 1.0 270 < th dose independent rect. 17 10
81 31.08 temperature 30.0 270 < th dose independent rect. 17 10
84 31.09 wind 7.0 90 < th dose independent rect. 19 9
94 31.11 atmosphere 995.0 90 > th dose independent rect. 19 9
101 31.11 atmosphere 1015.0 90 < th dose independent rect. 4 15
103 31.11 radiation 1.0 90 < th dose dependent rect. 19 9
108 31.12 radiation 1.0 90 < th dose independent rect. 19 11
114 31.13 radiation 1.0 270 < th dose dependent rect. 12 15
148 31.21 radiation 1.0 90 < th dose independent rect. 19 21
176 31.26 precipitation 0.1 90 < th dose independent rect. 19 9
180 31.26 precipitation 0.1 90 < th dose dependent rect. 19 9
189 31.32 wind 9.0 90 < th dose independent rect. 4 15
207 31.36 precipitation 0.1 270 < th dose independent rect. 14 17
209 31.36 precipitation 0.1 270 < th dose dependent rect. 14 17
210 31.37 atmosphere 1010.0 90 < th dose independent rect. 19 9
214 31.37 atmosphere 995.0 90 > th dose independent rect. 4 15
217 31.39 temperature 20.0 10 > th dose independent rect. 5 15
242 31.44 radiation 1.0 10 < th dose independent rect. 20 18
245 31.44 wind 9.0 90 < th dose dependent rect. 19 9
312 31.56 radiation 1.0 10 < th dose independent rect. 20 16
318 31.57 humidity 50.0 270 > th dose independent rect. 7 7
342 31.59 radiation 1.0 90 > th dose independent rect. 17 13
344 31.59 radiation 1.0 90 > th dose independent rect. 16 16
368 31.62 wind 9.0 270 < th dose independent rect. 7 7
388 31.63 radiation 1.0 270 > th dose independent rect. 14 16
397 31.65 wind 1.0 270 > th dose independent rect. 14 17
400 31.65 humidity 80.0 720 < th dose dependent sin 13 NA
412 31.66 humidity 80.0 720 < th dose dependent rect. 18 4
425 31.67 humidity 80.0 720 < th dose dependent rect. 15 7
449 31.71 temperature 10.0 270 > th dose independent rect. 7 7
451 31.71 atmosphere 995.0 270 > th dose independent rect. 7 7
452 31.71 atmosphere 1015.0 270 < th dose independent rect. 7 7
458 31.71 temperature 10.0 270 > th dose independent rect. 14 17
463 31.72 precipitation 0.1 270 < th dose independent rect. 7 7
465 31.72 precipitation 0.1 270 < th dose dependent rect. 7 7
467 31.73 temperature 30.0 720 < th dose independent rect. 17 4
510 31.78 atmosphere 1010.0 10 < th dose independent rect. 20 9
524 31.79 precipitation 0.1 10 < th dose independent rect. 5 15
532 31.79 precipitation 0.1 10 < th dose dependent rect. 5 15
539 31.80 precipitation 0.1 10 < th dose independent rect. 16 17
548 31.80 precipitation 0.1 10 < th dose dependent rect. 16 17
550 31.81 wind 9.0 10 < th dose independent rect. 20 9
567 31.82 temperature 30.0 10 < th dose independent rect. 20 9
568 31.82 humidity 50.0 10 > th dose independent rect. 20 9
572 31.82 atmosphere 995.0 10 > th dose independent rect. 20 9
579 31.82 temperature 10.0 10 > th dose independent rect. 5 15
581 31.82 atmosphere 1015.0 10 < th dose independent rect. 5 15
594 31.83 temperature 10.0 270 > th dose dependent rect. 14 4
622 31.85 temperature 30.0 720 < th dose independent rect. 18 1
623 31.85 radiation 40.0 10 < th dose independent rect. 16 17
643 31.87 radiation 40.0 90 < th dose independent rect. 4 15
647 31.88 wind 9.0 30 < th dose independent rect. 9 7
666 31.89 wind 9.0 270 < th dose independent rect. 14 17
687 31.91 temperature 10.0 10 > th dose independent rect. 9 7
690 31.91 atmosphere 1015.0 10 < th dose independent rect. 9 7
691 31.91 precipitation 0.1 10 < th dose independent rect. 9 7
695 31.91 temperature 10.0 10 > th dose independent rect. 16 17
696 31.91 radiation 30.0 90 < th dose independent rect. 15 18
699 31.91 precipitation 0.1 10 < th dose dependent rect. 9 7
710 31.92 atmosphere 995.0 270 > th dose independent rect. 14 17
727 31.93 humidity 50.0 720 > th dose dependent rect. 15 13
741 31.95 humidity 80.0 1440 < th dose dependent rect. 18 1
804 31.99 humidity 50.0 270 > th dose independent rect. 8 18
889 32.04 atmosphere 995.0 10 > th dose independent rect. 16 17
908 32.05 humidity 70.0 720 < th dose independent rect. 16 3
929 32.06 wind 9.0 10 < th dose independent rect. 5 15
930 32.06 atmosphere 995.0 10 > th dose independent rect. 5 15
931 32.06 wind 9.0 30 < th dose independent rect. 16 17
935 32.06 humidity 50.0 270 > th dose independent rect. 7 20
949 32.07 humidity 70.0 720 > th dose independent sin 13 NA
954 32.07 wind 1.0 30 > th dose independent rect. 9 7
955 32.07 atmosphere 995.0 10 > th dose independent rect. 9 7
992 32.07 humidity 90.0 10 < th dose dependent rect. 16 15
996 32.08 precipitation 0.1 10 < th dose independent rect. 20 9