BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0137500 Os03g0137500|AK100231
(276 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G57490.1 | chr5:23283895-23285335 REVERSE LENGTH=275 288 3e-78
AT3G01280.1 | chr3:85754-87612 FORWARD LENGTH=277 238 2e-63
AT5G15090.1 | chr5:4889641-4891389 REVERSE LENGTH=275 234 4e-62
AT5G67500.2 | chr5:26935223-26937123 FORWARD LENGTH=304 226 7e-60
AT3G49920.1 | chr3:18505836-18507699 REVERSE LENGTH=227 140 8e-34
AT5G37610.1 | chr5:14938121-14938612 FORWARD LENGTH=164 66 2e-11
>AT5G57490.1 | chr5:23283895-23285335 REVERSE LENGTH=275
Length = 274
Score = 288 bits (736), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 141/276 (51%), Positives = 185/276 (67%), Gaps = 2/276 (0%)
Query: 1 MSKGPAPFLNIGKRAKDLLYKDYNFDQKFXXXXXXXXXXXXXXXXVKIDELFIGDIQTQH 60
M PAPF +IGK+AKDLL KDY FD KF +K D+ F GDI T +
Sbjct: 1 MGSSPAPFADIGKKAKDLLNKDYIFDHKFTLTMLSATGTEFVATGLKKDDFFFGDISTLY 60
Query: 61 KSGKTTVDVKIDSESRVSTTVTVDEALTGLKTSFSFRVPDQKSGKLDLQYLHDHFALNST 120
K T VD+KIDS S VST VT+ L K SF++PD KSGKLD+QY+H H LNS+
Sbjct: 61 KGQNTIVDLKIDSHSSVSTKVTLKNLLPSAKAVISFKIPDHKSGKLDVQYVHPHATLNSS 120
Query: 121 IGLTSTPLIELAATIGTNELSAGAEVGFDSTSASVTKYNSGICYNKHDFSAAVLLADKGE 180
IGL TPL++L+ATIG+ + G EV FD+ S+S+TKYN+GI +N SAA++L DKGE
Sbjct: 121 IGLNPTPLLDLSATIGSQNVCLGGEVSFDTASSSLTKYNAGIGFNNQGVSAALILEDKGE 180
Query: 181 TLKASYIHTFNETNGATVAAEVTHKLKTKENYFTIGSSHAIDSSTLLKTRFSNGGKVGVL 240
+L+A+Y+HT N T + AE+ + N FT+GSSH++D T++KTRFSN GK G++
Sbjct: 181 SLRATYVHTVNPT--TSFGAELIRRFSNYNNSFTVGSSHSVDQFTVVKTRFSNSGKAGMV 238
Query: 241 CQHEWRPKSTVSISAEYDPKVVSSPSRFGVAIALKP 276
Q EWRPKS ++ SAEYD K V+S + G+A+ALKP
Sbjct: 239 VQREWRPKSHITFSAEYDSKAVTSSPKLGLALALKP 274
>AT3G01280.1 | chr3:85754-87612 FORWARD LENGTH=277
Length = 276
Score = 238 bits (607), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 115/276 (41%), Positives = 171/276 (61%)
Query: 1 MSKGPAPFLNIGKRAKDLLYKDYNFDQKFXXXXXXXXXXXXXXXXVKIDELFIGDIQTQH 60
M KGP + IGK+A+DLLYKD+N DQKF K +L +GD+ Q
Sbjct: 1 MVKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQS 60
Query: 61 KSGKTTVDVKIDSESRVSTTVTVDEALTGLKTSFSFRVPDQKSGKLDLQYLHDHFALNST 120
+ T D+K+ ++S T TVDEA GL++ FSF+VPDQ SGK++LQYLH++ ++++
Sbjct: 61 RRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTS 120
Query: 121 IGLTSTPLIELAATIGTNELSAGAEVGFDSTSASVTKYNSGICYNKHDFSAAVLLADKGE 180
+GLT P + + IG+N L+ G +V FD+ S + TK N+G+ + K D A++ + DKG+
Sbjct: 121 MGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGD 180
Query: 181 TLKASYIHTFNETNGATVAAEVTHKLKTKENYFTIGSSHAIDSSTLLKTRFSNGGKVGVL 240
L ASY H N V AEV+HKL +K++ T+G+ H++D T +K R ++ G L
Sbjct: 181 LLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASAL 240
Query: 241 CQHEWRPKSTVSISAEYDPKVVSSPSRFGVAIALKP 276
QHEW+PKS +IS E D K + ++ G+A+ALKP
Sbjct: 241 IQHEWKPKSFFTISGEVDTKSIDKSAKVGLALALKP 276
>AT5G15090.1 | chr5:4889641-4891389 REVERSE LENGTH=275
Length = 274
Score = 234 bits (597), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 111/276 (40%), Positives = 166/276 (60%), Gaps = 2/276 (0%)
Query: 1 MSKGPAPFLNIGKRAKDLLYKDYNFDQKFXXXXXXXXXXXXXXXXVKIDELFIGDIQTQH 60
M KGP + IGK+A+DLLY+DY DQKF LF+GD+ TQ
Sbjct: 1 MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQV 60
Query: 61 KSGKTTVDVKIDSESRVSTTVTVDEALTGLKTSFSFRVPDQKSGKLDLQYLHDHFALNST 120
K+ T DVK+ ++S + TT+T DE GLK ++PD KSGK ++QY HD+ ++++
Sbjct: 61 KNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTS 120
Query: 121 IGLTSTPLIELAATIGTNELSAGAEVGFDSTSASVTKYNSGICYNKHDFSAAVLLADKGE 180
+G T+TP++ + +GTN LS G +V +++ S + +N+G + K D +A+++L DKGE
Sbjct: 121 VGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGE 180
Query: 181 TLKASYIHTFNETNGATVAAEVTHKLKTKENYFTIGSSHAIDSSTLLKTRFSNGGKVGVL 240
L ASY + + V AE++H TKEN T+G+ HA+D T +K R +N G L
Sbjct: 181 KLNASYYQIVSPS--TVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANAL 238
Query: 241 CQHEWRPKSTVSISAEYDPKVVSSPSRFGVAIALKP 276
QHEWRPKS ++S E D K + ++ G+A+ALKP
Sbjct: 239 IQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 274
>AT5G67500.2 | chr5:26935223-26937123 FORWARD LENGTH=304
Length = 303
Score = 226 bits (577), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 123/303 (40%), Positives = 169/303 (55%), Gaps = 27/303 (8%)
Query: 1 MSKGPAPFLNIGKRAKDLLYKDYNFDQKFXXXXXXXXXXXXXXXXVKIDELFI------- 53
MSKGP F +IGK+AKDLL +DYN DQKF D+++
Sbjct: 1 MSKGPGLFTDIGKKAKDLLTRDYNSDQKFSISTYSASGVGTERENEYQDDIYFCLRTRCL 60
Query: 54 --------------------GDIQTQHKSGKTTVDVKIDSESRVSTTVTVDEALTGLKTS 93
D+ TQ+K DVKID++S V TTVT+ E L K
Sbjct: 61 IMSENEALTSTALKKGGVHAADVATQYKYKNALFDVKIDTDSSVLTTVTLTEILPSTKAI 120
Query: 94 FSFRVPDQKSGKLDLQYLHDHFALNSTIGLTSTPLIELAATIGTNELSAGAEVGFDSTSA 153
SF+VPD S KL++QY HDH + + L PLI++ AT+G+ +S GAE G+D+TS
Sbjct: 121 ASFKVPDYNSAKLEVQYFHDHATVTAAAALKQNPLIDITATLGSPVISFGAEAGYDTTSK 180
Query: 154 SVTKYNSGICYNKHDFSAAVLLADKGETLKASYIHTFNETNGATVAAEVTHKLKTKENYF 213
+ TKYN+GI K D +++L DKG++LKASY+H F+E EV K T EN
Sbjct: 181 TFTKYNAGISVTKPDACLSIILGDKGDSLKASYLHHFDEFKRTAAVGEVYRKFSTNENTI 240
Query: 214 TIGSSHAIDSSTLLKTRFSNGGKVGVLCQHEWRPKSTVSISAEYDPKVVSSPSRFGVAIA 273
T+G +AID ST +K + +N G +G L QHE P+S V++S+E D K + RFG+++A
Sbjct: 241 TVGGLYAIDHSTAVKAKLNNHGTLGALLQHEVLPRSLVTVSSEIDTKALEKHPRFGLSLA 300
Query: 274 LKP 276
LKP
Sbjct: 301 LKP 303
>AT3G49920.1 | chr3:18505836-18507699 REVERSE LENGTH=227
Length = 226
Score = 140 bits (353), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 133/276 (48%), Gaps = 50/276 (18%)
Query: 1 MSKGPAPFLNIGKRAKDLLYKDYNFDQKFXXXXXXXXXXXXXXXXVKIDELFIGDIQTQH 60
MSKGP F +IGK AKDLL +DY+ DQKF +K L ++ TQ+
Sbjct: 1 MSKGPGLFADIGKYAKDLLTRDYSTDQKFSISTNSVSGVALTSTALKNGVLHAANVATQY 60
Query: 61 KSGKTTVDVKIDSESRVSTTVTVDEALTGLKTSFSFRVPDQKSGKLDLQYLHDHFALNST 120
K T DVKID++ V + V + +N
Sbjct: 61 KYRNTFFDVKIDTDFNVKSLV---------------------------------YPMNKF 87
Query: 121 IGLTSTPLIELAATIGTNELSAGAEVGFDSTSASVTKYNSGICYNKHDFSAAVLLADKGE 180
+ +I N L+ G+D+TS + TKYN G+ K D +++L DKG+
Sbjct: 88 V------------SIDHNTLT-----GYDTTSRTFTKYNVGVSVTKPDQCVSIILGDKGD 130
Query: 181 TLKASYIHTFNETNGATVAAEVTHKLKTKENYFTIGSSHAIDSSTLLKTRFSNGGKVGVL 240
++KASY++ +E+ + EV K+ T E T+G +A+D T +K + ++ GK G L
Sbjct: 131 SIKASYVYYLDESTRSATVGEVIRKISTNETTVTVGGLYAVDHLTNVKAKLNSNGKFGAL 190
Query: 241 CQHEWRPKSTVSISAEYDPKVVSSPSRFGVAIALKP 276
QHE PKS V+IS E D K + R G++++LKP
Sbjct: 191 LQHEGLPKSIVTISGEIDTKTLDKYPRLGLSLSLKP 226
>AT5G37610.1 | chr5:14938121-14938612 FORWARD LENGTH=164
Length = 163
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 8/161 (4%)
Query: 117 LNSTIGLTSTPLIELAATIGTNELSAGAEVGFDSTSASVTKYNSGICYNKHDFSAAVLLA 176
+++ +GL + P++ +A G + G E+ D + +TK N+ + D + +
Sbjct: 8 ISTIVGLFANPILSFSAVFGNDFWRFGFELTLDLVNRIITKANTVLSLITEDTTTTFSID 67
Query: 177 DKGETLKASYIHTFNETNGATVA-AEVTHKLKTKENYFTIGSSHAIDSSTLLKTRF--SN 233
K ASY + + TV AE + L K N F+IG H L++ SN
Sbjct: 68 KKASLFTASY---YQRLHSKTVCGAEAKYILSDKSNSFSIGKRHLFGDDDLIQALLSVSN 124
Query: 234 GGKVGVLCQHEWRPKSTVSISAEYDPKVVSSPSRFGVAIAL 274
GG + VL QH W KS +I+ E + S RFG+A+ L
Sbjct: 125 GGSMRVLFQHHWTLKSFFTIAGE--RLLNHSSQRFGLAVEL 163
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.129 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,287,325
Number of extensions: 193204
Number of successful extensions: 379
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 7
Length of query: 276
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 179
Effective length of database: 8,447,217
Effective search space: 1512051843
Effective search space used: 1512051843
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)