Os01g0588200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Voltage-dependent anion channel.
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Os01g0588200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Voltage-dependent anion channel.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.07 | 0.352 | 9.99 | -0.665 | 1.74 | -0.571 | -1.23 | -1.67 | -0.444 | 1.88 | 21.32 | 4242 | -- | -- |
| 58.67 | 0.357 | 9.98 | -0.793 | 1.76 | -0.536 | -1.22 | -- | -0.431 | 1.93 | 54.78 | 4108 | -- | -- |
| 57.26 | 0.352 | 9.99 | -0.611 | 1.91 | -0.636 | -- | -2.62 | -0.421 | 2 | 19.67 | 3329 | -- | -- |
| 61.95 | 0.367 | 9.98 | -0.808 | 1.72 | -0.563 | -- | -- | -0.466 | 2.02 | 112.7 | 2687 | -- | -- |
| 135.38 | 0.545 | 9.95 | -0.755 | -- | 1.24 | -- | -0.849 | -0.349 | -- | 19.67 | 3329 | -- | -- |
| 65.65 | 0.38 | 9.97 | -0.822 | 1.8 | -- | -1.07 | -- | -0.376 | 1.84 | -- | -- | -- | -- |
| 70.15 | 0.392 | 9.96 | -0.789 | 1.8 | -- | -- | -- | -0.37 | 1.85 | -- | -- | -- | -- |
| 81.28 | 0.42 | 9.93 | -0.698 | -- | 1.45 | -- | -- | -0.303 | -- | 0.9008 | 264 | -- | -- |
| 77.42 | 0.41 | 9.97 | -- | 1.73 | -0.691 | -- | -- | -0.413 | 1.94 | 119.2 | 5528 | -- | -- |
| 265.99 | 0.762 | 9.94 | -0.715 | -- | -- | -- | -- | -0.329 | -- | -- | -- | -- | -- |
| 86.54 | 0.435 | 9.94 | -- | 1.78 | -- | -- | -- | -0.282 | 1.84 | -- | -- | -- | -- |
| 92.67 | 0.448 | 9.93 | -- | -- | 1.44 | -- | -- | -0.251 | -- | 0.7036 | 270 | -- | -- |
| 279.47 | 0.78 | 9.92 | -- | -- | -- | -- | -- | -0.249 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.57 | humidity | 70 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 6 | 52.45 | humidity | 80 | 270 | > th | dose independent | rect. | 6 | 19 |
| 10 | 52.97 | radiation | 10 | 4320 | < th | dose independent | rect. | 7 | 4 |
| 12 | 53.13 | radiation | 20 | 4320 | < th | dose dependent | rect. | 7 | 4 |
| 14 | 53.22 | radiation | 10 | 4320 | < th | dose independent | rect. | 17 | 18 |
| 20 | 53.32 | wind | 1 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 23 | 53.37 | radiation | 10 | 4320 | < th | dose independent | rect. | 19 | 16 |
| 24 | 53.37 | wind | 3 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 25 | 53.38 | radiation | 10 | 4320 | < th | dose independent | rect. | 1 | 10 |
| 32 | 53.39 | radiation | 10 | 4320 | < th | dose independent | rect. | 5 | 6 |
| 36 | 53.40 | radiation | 20 | 4320 | < th | dose dependent | rect. | 24 | 11 |
| 44 | 53.41 | radiation | 20 | 4320 | < th | dose dependent | rect. | 2 | 9 |
| 55 | 53.56 | radiation | 10 | 4320 | > th | dose independent | rect. | 17 | 17 |
| 62 | 53.63 | radiation | 40 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 84 | 53.76 | radiation | 40 | 270 | < th | dose independent | rect. | 6 | 19 |
| 86 | 53.79 | humidity | 60 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 102 | 53.81 | radiation | 10 | 4320 | < th | dose dependent | sin | 7 | NA |
| 137 | 53.90 | radiation | 10 | 4320 | > th | dose independent | rect. | 5 | 6 |
| 168 | 53.92 | humidity | 70 | 270 | > th | dose independent | rect. | 6 | 7 |
| 242 | 54.04 | radiation | 1 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 247 | 54.06 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 249 | 54.07 | radiation | 10 | 4320 | > th | dose independent | sin | 9 | NA |
| 263 | 54.09 | radiation | 10 | 4320 | < th | dose independent | sin | 8 | NA |
| 291 | 54.16 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 332 | 54.24 | humidity | 70 | 1440 | > th | dose dependent | rect. | 5 | 7 |
| 356 | 54.30 | humidity | 60 | 1440 | > th | dose dependent | rect. | 1 | 11 |
| 364 | 54.36 | radiation | 1 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 371 | 54.39 | humidity | 70 | 270 | > th | dose independent | rect. | 20 | 16 |
| 372 | 54.39 | humidity | 70 | 1440 | > th | dose dependent | sin | 4 | NA |
| 406 | 54.45 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 506 | 54.61 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 566 | 54.69 | humidity | 80 | 270 | > th | dose independent | rect. | 7 | 3 |
| 579 | 54.72 | radiation | 1 | 4320 | > th | dose dependent | sin | 10 | NA |
| 618 | 54.79 | humidity | 90 | 1440 | < th | dose independent | rect. | 5 | 12 |
| 657 | 54.84 | humidity | 90 | 1440 | < th | dose dependent | rect. | 20 | 16 |
| 675 | 54.88 | radiation | 40 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 679 | 54.88 | humidity | 60 | 1440 | > th | dose dependent | rect. | 19 | 17 |
| 724 | 54.91 | radiation | 30 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 849 | 55.05 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 866 | 55.07 | humidity | 80 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 867 | 55.07 | radiation | 40 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 878 | 55.08 | wind | 1 | 43200 | > th | dose independent | rect. | 3 | 9 |
| 888 | 55.10 | humidity | 90 | 1440 | < th | dose dependent | sin | 7 | NA |
| 893 | 55.11 | radiation | 40 | 4320 | < th | dose independent | rect. | 15 | 19 |
| 903 | 55.13 | radiation | 40 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 927 | 55.15 | radiation | 40 | 4320 | < th | dose independent | rect. | 18 | 16 |
| 950 | 55.16 | radiation | 40 | 4320 | < th | dose independent | rect. | 24 | 10 |
| 969 | 55.17 | humidity | 70 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 988 | 55.19 | humidity | 80 | 14400 | < th | dose independent | rect. | 9 | 1 |