BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0588200 Os01g0588200|AK070745
(275 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0588200 Voltage-dependent anion channel 560 e-160
Os09g0361400 Outer mitochondrial membrane protein porin (Vo... 395 e-110
Os05g0536200 Voltage-dependent anion channel 369 e-102
Os01g0715500 Similar to Voltage-dependent anion channel 335 2e-92
Os03g0137500 Similar to VDAC3.1 243 1e-64
Os03g0202200 Porin-like protein 222 3e-58
AK108668 82 4e-16
>Os01g0588200 Voltage-dependent anion channel
Length = 275
Score = 560 bits (1444), Expect = e-160, Method: Compositional matrix adjust.
Identities = 275/275 (100%), Positives = 275/275 (100%)
Query: 1 MAPGLYTDIGKKTRDLLYRDYGTHHKFTLTTCTPEGVTITAAGTRKNESVFGELQTQLKN 60
MAPGLYTDIGKKTRDLLYRDYGTHHKFTLTTCTPEGVTITAAGTRKNESVFGELQTQLKN
Sbjct: 1 MAPGLYTDIGKKTRDLLYRDYGTHHKFTLTTCTPEGVTITAAGTRKNESVFGELQTQLKN 60
Query: 61 KKLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQRSGKLELQYLHEYAGINASV 120
KKLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQRSGKLELQYLHEYAGINASV
Sbjct: 61 KKLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQRSGKLELQYLHEYAGINASV 120
Query: 121 GLNSNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIASLHLNNHGDT 180
GLNSNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIASLHLNNHGDT
Sbjct: 121 GLNSNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIASLHLNNHGDT 180
Query: 181 LIASYYHLVKHHSNTAVGAELSHSFSRNESTLIFGSQHSLDPHTTVKARFNNYGMASALV 240
LIASYYHLVKHHSNTAVGAELSHSFSRNESTLIFGSQHSLDPHTTVKARFNNYGMASALV
Sbjct: 181 LIASYYHLVKHHSNTAVGAELSHSFSRNESTLIFGSQHSLDPHTTVKARFNNYGMASALV 240
Query: 241 QHEWRPKSLITISGEVDTKAIEKSTKVGLSLVLKH 275
QHEWRPKSLITISGEVDTKAIEKSTKVGLSLVLKH
Sbjct: 241 QHEWRPKSLITISGEVDTKAIEKSTKVGLSLVLKH 275
>Os09g0361400 Outer mitochondrial membrane protein porin (Voltage-dependent
anion- selective channel protein) (VDAC)
Length = 274
Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/274 (69%), Positives = 231/274 (84%), Gaps = 2/274 (0%)
Query: 1 MAPGLYTDIGKKTRDLLYRDYGTHHKFTLTTCTPEGVTITAAGTRKNESVFGELQTQLKN 60
+ PGLY +IGKK RDLLYRDY T HKFTLTT T GV ITA T+K + +FGE+Q+Q+KN
Sbjct: 2 VGPGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKN 61
Query: 61 KKLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQRSGKLELQYLHEYAGINASV 120
K +TVDVKANS+S+++TTVTVDE TPGLKSILS VPDQRSGK ELQY H+YAG++AS+
Sbjct: 62 KNITVDVKANSDSNVVTTVTVDEL-TPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASI 120
Query: 121 GLNSNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIASLHLNNHGDT 180
GL ++P+VNLS VFG+K L+VG DV+ DTAT N TKYNA LS +N DLIASL+LNN GD+
Sbjct: 121 GLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDS 180
Query: 181 LIASYYHLVKHHSNTAVGAELSHSFSRNESTLIFGSQHSLDPHTTVKARFNNYGMASALV 240
L ASYYH+V +HS TAVGAEL+HSFS NE++L FG+QH+LDP T VKARFNN G ASAL+
Sbjct: 181 LTASYYHIV-NHSATAVGAELTHSFSSNENSLTFGTQHTLDPLTVVKARFNNSGKASALL 239
Query: 241 QHEWRPKSLITISGEVDTKAIEKSTKVGLSLVLK 274
QHEWRPKS+ TIS EVDTKAI+KS+KVG+++ LK
Sbjct: 240 QHEWRPKSVWTISAEVDTKAIDKSSKVGIAVALK 273
>Os05g0536200 Voltage-dependent anion channel
Length = 280
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/270 (68%), Positives = 218/270 (80%), Gaps = 2/270 (0%)
Query: 5 LYTDIGKKTRDLLYRDYGTHHKFTLTTCTPEGVTITAAGTRKNESVFGELQTQLKNKKLT 64
LY+DIGKK RDLLYRDY T KFTLTT G IT AGT+KNES+F E+Q+Q+KN ++
Sbjct: 12 LYSDIGKKARDLLYRDYHTDQKFTLTTYAANGAAITVAGTKKNESIFSEIQSQVKNNNVS 71
Query: 65 VDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQRSGKLELQYLHEYAGINASVGLNS 124
VDVKA S+S L+TT TV + GTPGLK ILS+ P Q+S K E+QYLH +AG+NA VGLN+
Sbjct: 72 VDVKATSDSKLITTFTVHDLGTPGLKGILSIPFPYQKSAKAEVQYLHPHAGLNAIVGLNA 131
Query: 125 NPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIASLHLNNHGDTLIAS 184
NP+V+ SGVFG+ +VG DVAFDTAT +FTKYNA LS T DL A+L LNN GD+L AS
Sbjct: 132 NPLVSFSGVFGTGAFAVGTDVAFDTATGDFTKYNAGLSHTTPDLTAALLLNNKGDSLAAS 191
Query: 185 YYHLVKHHSNTAVGAELSHSFSRNESTLIFGSQHSLDPHTTVKARFNNYGMASALVQHEW 244
YYH V S AVGAEL+HSFS NE+TL FG+QH+LD TTVKARFNN+GMASAL+QHE+
Sbjct: 192 YYHKVSKTS--AVGAELAHSFSSNENTLTFGTQHALDELTTVKARFNNFGMASALIQHEF 249
Query: 245 RPKSLITISGEVDTKAIEKSTKVGLSLVLK 274
RPKSL+TIS EVDTKAI+KS+KVGLSLVLK
Sbjct: 250 RPKSLVTISTEVDTKAIDKSSKVGLSLVLK 279
>Os01g0715500 Similar to Voltage-dependent anion channel
Length = 318
Score = 335 bits (859), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 170/279 (60%), Positives = 209/279 (74%), Gaps = 17/279 (6%)
Query: 5 LYTDIGKKTR---------DLLYRDYGTHHKFTLTTCTPEGVTITAAGTRKNESVFGELQ 55
LY +IGKK R DLLY+D+ T KFTLTT T GV ITAA T K+E++F E+Q
Sbjct: 47 LYFEIGKKARGVHALFILFDLLYKDFHTDQKFTLTTYTNNGVVITAASTMKDEAIFSEIQ 106
Query: 56 TQLKNKKLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQRSGKLELQYLHEYAG 115
T+LK+ + +DV LTT+T ++ G GLK I+SL P Q +GK ELQYLH+YAG
Sbjct: 107 TKLKSNNVMLDV--------LTTITTEDLGVSGLKQIVSLPFPYQTAGKAELQYLHDYAG 158
Query: 116 INASVGLNSNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIASLHLN 175
I+ VGL S P+VNLSGVFG+K ++VG DVA DT+T +FTKY+A L++ NSDL A L LN
Sbjct: 159 ISLGVGLTSKPLVNLSGVFGNKSVAVGADVAVDTSTGDFTKYDAGLTINNSDLAADLTLN 218
Query: 176 NHGDTLIASYYHLVKHHSNTAVGAELSHSFSRNESTLIFGSQHSLDPHTTVKARFNNYGM 235
N GD+L ASYYHLV S TA GAEL+HSFS E+TL FG QH+LDP TTVKAR+NN+GM
Sbjct: 219 NKGDSLTASYYHLVNKESGTAAGAELTHSFSTKENTLSFGMQHALDPLTTVKARYNNHGM 278
Query: 236 ASALVQHEWRPKSLITISGEVDTKAIEKSTKVGLSLVLK 274
SAL+QHEWRPKS +T+S EVDTKAI+K++KVGLSLVLK
Sbjct: 279 VSALIQHEWRPKSFLTLSAEVDTKAIDKASKVGLSLVLK 317
>Os03g0137500 Similar to VDAC3.1
Length = 276
Score = 243 bits (619), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/273 (43%), Positives = 175/273 (64%), Gaps = 1/273 (0%)
Query: 2 APGLYTDIGKKTRDLLYRDYGTHHKFTLTTCTPEGVTITAAGTRKNESVFGELQTQLKNK 61
P + +IGK+ +DLLY+DY KF+LTT + G+ +TA G + +E G++QTQ K+
Sbjct: 4 GPAPFLNIGKRAKDLLYKDYNFDQKFSLTTTSNSGLGLTATGVKIDELFIGDIQTQHKSG 63
Query: 62 KLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQRSGKLELQYLHEYAGINASVG 121
K TVDVK +SES + TTVTVDE T GLK+ S VPDQ+SGKL+LQYLH++ +N+++G
Sbjct: 64 KTTVDVKIDSESRVSTTVTVDEALT-GLKTSFSFRVPDQKSGKLDLQYLHDHFALNSTIG 122
Query: 122 LNSNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIASLHLNNHGDTL 181
L S P++ L+ G+ ELS G +V FD+ +++ TKYN+ + D A++ L + G+TL
Sbjct: 123 LTSTPLIELAATIGTNELSAGAEVGFDSTSASVTKYNSGICYNKHDFSAAVLLADKGETL 182
Query: 182 IASYYHLVKHHSNTAVGAELSHSFSRNESTLIFGSQHSLDPHTTVKARFNNYGMASALVQ 241
ASY H + V AE++H E+ GS H++D T +K RF+N G L Q
Sbjct: 183 KASYIHTFNETNGATVAAEVTHKLKTKENYFTIGSSHAIDSSTLLKTRFSNGGKVGVLCQ 242
Query: 242 HEWRPKSLITISGEVDTKAIEKSTKVGLSLVLK 274
HEWRPKS ++IS E D K + ++ G+++ LK
Sbjct: 243 HEWRPKSTVSISAEYDPKVVSSPSRFGVAIALK 275
>Os03g0202200 Porin-like protein
Length = 277
Score = 222 bits (565), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 117/273 (42%), Positives = 175/273 (64%), Gaps = 3/273 (1%)
Query: 3 PGLYTDIGKKTRDLLYRDYGTHHKFTLTTCTPEGVTITAAGTRKNESVFGELQTQLKNKK 62
PGL++DIGK+ +DLL +DY K T++T + GV +T+ +K ++ + K K
Sbjct: 6 PGLFSDIGKRAKDLLTKDYTYDQKLTVSTVSSSGVGLTSTAVKKGGLYTLDVSSVYKYKS 65
Query: 63 LTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQRSGKLELQYLHEYAGINASVGL 122
VDVK ++ES++ TT+TV + P K + S+ +PD SGK+E+QY HE A +VG+
Sbjct: 66 TLVDVKVDTESNISTTLTVFDV-LPSTKLVTSVKLPDYNSGKVEMQYFHENASFATAVGM 124
Query: 123 NSNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIASLHLNNHGDTL- 181
+P+V SG G++ L+ G + FDTAT FTKY+AA+ +T D A++ L + GDT+
Sbjct: 125 KPSPVVEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAIGVTKPDYHAAIVLADKGDTVK 184
Query: 182 IASYYHLVKHHSNTAVGAELSHSFSRNESTLIFGSQHSLDPHTTVKARFNNYGMASALVQ 241
++ YHL ++ V AEL+ S NE+TL G + +DP T VKAR NN G +AL+Q
Sbjct: 185 VSGVYHLDDKQKSSVV-AELTRRLSTNENTLTVGGLYKVDPETAVKARLNNTGKLAALLQ 243
Query: 242 HEWRPKSLITISGEVDTKAIEKSTKVGLSLVLK 274
HE +PKS++TISGE DTKA+++ K GL+L L+
Sbjct: 244 HEVKPKSVLTISGEFDTKALDRPPKFGLALALR 276
>AK108668
Length = 282
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 129/272 (47%), Gaps = 16/272 (5%)
Query: 1 MAPGLYTDIGKKTRDLLYR--DYGTHHKFTLTTCTPEGVTITAAGTRKN--ESVFGELQT 56
MAP Y D+GK +DL + +YGT K + T T + G N + G L+
Sbjct: 1 MAPPQYADLGKAAKDLFNKGYNYGTV-KLDVKTRTKNEIDFNITGEHNNDVQKSLGTLEA 59
Query: 57 QLKNKK--LTVDVKANSESDLLTTVTVDEFGTPGLKSIL-SLVVP--DQRSGKLELQYLH 111
+ K+ + LT K N+++ L +T+++ GLK L S P ++SG L+ Y H
Sbjct: 60 KYKSPQHGLTFVEKWNTDNILKAEITLEDSIVKGLKVALDSSYSPATGKKSGVLKTSYKH 119
Query: 112 EYAGINASVGLN-SNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIA 170
+ +N V L+ + P+V+ S G +G+ +FDT+ S T+ N A+ +D
Sbjct: 120 DKLVLNTDVDLDLAGPVVHNSLTVGHLGWLLGLQTSFDTSKSQLTRNNFAVGYAANDF-- 177
Query: 171 SLHLN-NHGDTLIASYYHLVKHHSNTAVGAELSHSFSRNESTLIFGSQHSLDPHTTVKAR 229
+LH N N G + S Y V + T +G LS S N++ S++ LD + +V+A+
Sbjct: 178 TLHTNVNDGTEVGGSIYQCV--NDKTELGVSLSWSSVNNQTRFALASKYQLDKYASVQAK 235
Query: 230 FNNYGMASALVQHEWRPKSLITISGEVDTKAI 261
NN + R + +S VD K I
Sbjct: 236 VNNLSQIGLSYSQQLRDGVKLILSALVDGKNI 267
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.129 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,070,422
Number of extensions: 292267
Number of successful extensions: 497
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 489
Number of HSP's successfully gapped: 8
Length of query: 275
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 176
Effective length of database: 11,866,615
Effective search space: 2088524240
Effective search space used: 2088524240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 155 (64.3 bits)