Os01g0715500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Voltage-dependent anion channel.
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Os01g0715500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Voltage-dependent anion channel.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.94 | 0.429 | -2010 | 12300 | 0.00449 | -589000 | 0.309 | 3600000 | -0.0142 | 2.55 | 995 | 10 | -- | -- |
| 80.69 | 0.422 | 3.04 | -0.127 | 0.00598 | 4.84 | 0.315 | -- | -0.0164 | 2.41 | 995 | 10 | -- | -- |
| 85.25 | 0.43 | -2010 | 12300 | 0.0219 | -589000 | -- | 3600000 | -0.0189 | 7.07 | 995 | 10 | -- | -- |
| 78.24 | 0.415 | 3.04 | -0.13 | 0.00888 | 5.34 | -- | -- | -0.0207 | 6.94 | 994.8 | 11 | -- | -- |
| 85.28 | 0.43 | -2010 | 12300 | -- | -589000 | -- | 3600000 | -0.0183 | -- | 995 | 10 | -- | -- |
| 106.4 | 0.484 | 3.04 | -0.0933 | 0.0319 | -- | -0.208 | -- | -0.0306 | 13.3 | -- | -- | -- | -- |
| 106.54 | 0.483 | 3.04 | -0.1 | 0.0442 | -- | -- | -- | -0.0312 | 16 | -- | -- | -- | -- |
| 78.24 | 0.412 | 3.04 | -0.13 | -- | 5.34 | -- | -- | -0.0207 | -- | 994.8 | 11 | -- | -- |
| 78.69 | 0.415 | 3.03 | -- | 0.00761 | 5.32 | -- | -- | -0.00627 | 8.07 | 994.8 | 11 | -- | -- |
| 106.65 | 0.483 | 3.04 | -0.102 | -- | -- | -- | -- | -0.0324 | -- | -- | -- | -- | -- |
| 106.8 | 0.483 | 3.04 | -- | 0.0461 | -- | -- | -- | -0.0201 | 16 | -- | -- | -- | -- |
| 78.69 | 0.414 | 3.03 | -- | -- | 5.32 | -- | -- | -0.00619 | -- | 994.8 | 11 | -- | -- |
| 106.92 | 0.483 | 3.04 | -- | -- | -- | -- | -- | -0.0211 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.90 | atmosphere | 995 | 10 | > th | dose independent | sin | 6 | NA |
| 3 | 78.09 | atmosphere | 995 | 10 | < th | dose independent | sin | 6 | NA |
| 4 | 78.09 | atmosphere | 995 | 90 | < th | dose independent | rect. | 14 | 1 |
| 5 | 78.09 | atmosphere | 995 | 10 | < th | dose independent | rect. | 15 | 1 |
| 131 | 78.09 | atmosphere | 995 | 10 | < th | dose dependent | sin | 6 | NA |
| 132 | 78.09 | atmosphere | 995 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 133 | 78.09 | atmosphere | 995 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 311 | 81.01 | temperature | 30 | 30 | > th | dose dependent | rect. | 16 | 1 |
| 485 | 85.10 | atmosphere | 995 | 10 | < th | dose dependent | no | NA | NA |
| 704 | 85.88 | temperature | 30 | 10 | > th | dose dependent | sin | 12 | NA |