BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0715500 Os01g0715500|Os01g0715500
(318 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G01280.1 | chr3:85754-87612 FORWARD LENGTH=277 284 5e-77
AT5G15090.1 | chr5:4889641-4891389 REVERSE LENGTH=275 283 1e-76
AT5G57490.1 | chr5:23283895-23285335 REVERSE LENGTH=275 197 9e-51
AT5G67500.2 | chr5:26935223-26937123 FORWARD LENGTH=304 190 9e-49
AT3G49920.1 | chr3:18505836-18507699 REVERSE LENGTH=227 124 7e-29
AT5G37610.1 | chr5:14938121-14938612 FORWARD LENGTH=164 77 1e-14
>AT3G01280.1 | chr3:85754-87612 FORWARD LENGTH=277
Length = 276
Score = 284 bits (726), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 147/279 (52%), Positives = 192/279 (68%), Gaps = 16/279 (5%)
Query: 47 LYFEIGKKARGVHALFILFDLLYKDFHTDQKFTLTTYTNNGVVITAASTMKDEAIFSEIQ 106
LY EIGKKAR DLLYKD ++DQKF++TT++ GV IT+ T K + + ++
Sbjct: 7 LYTEIGKKAR---------DLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVA 57
Query: 107 TKLKSNNVMLD--VLTTIT-----TEDLGVSGLKQIVSLPFPYQTAGKAELQYLHDYAGI 159
+ + N+ D V T T T D GL+ I S P Q +GK ELQYLH+YAGI
Sbjct: 58 FQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGI 117
Query: 160 SLGVGLTSKPLVNLSGVFGNKSVAVGADVAVDTSTGDFTKYDAGLTINNSDLAADLTLNN 219
S +GLT P VN SGV G+ +AVG DV+ DT +G+FTK +AGL+ DL A LT+N+
Sbjct: 118 STSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVND 177
Query: 220 KGDSLTASYYHLVNKESGTAAGAELTHSFSTKENTLSFGMQHALDPLTTVKARYNNHGMV 279
KGD L ASYYH+VN TA GAE++H S+K++T++ G QH+LDPLT+VKAR N+ G+
Sbjct: 178 KGDLLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIA 237
Query: 280 SALIQHEWRPKSFLTLSAEVDTKAIDKASKVGLSLVLKP 318
SALIQHEW+PKSF T+S EVDTK+IDK++KVGL+L LKP
Sbjct: 238 SALIQHEWKPKSFFTISGEVDTKSIDKSAKVGLALALKP 276
>AT5G15090.1 | chr5:4889641-4891389 REVERSE LENGTH=275
Length = 274
Score = 283 bits (723), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 145/279 (51%), Positives = 186/279 (66%), Gaps = 18/279 (6%)
Query: 47 LYFEIGKKARGVHALFILFDLLYKDFHTDQKFTLTTYTNNGVVITAASTMKDEAIFSEIQ 106
LY EIGKKAR DLLY+D+ DQKF++TTY++ GV IT T K ++
Sbjct: 7 LYTEIGKKAR---------DLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVA 57
Query: 107 TKLKSNNVMLDV-------LTTITTEDLGVSGLKQIVSLPFPYQTAGKAELQYLHDYAGI 159
T++K+NN DV L T T D GLK IV P +GKAE+QY HDYAGI
Sbjct: 58 TQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGI 117
Query: 160 SLGVGLTSKPLVNLSGVFGNKSVAVGADVAVDTSTGDFTKYDAGLTINNSDLAADLTLNN 219
S VG T+ P+VN SGV G +++G DVA +T +G+F ++AG DL A L LN+
Sbjct: 118 STSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILND 177
Query: 220 KGDSLTASYYHLVNKESGTAAGAELTHSFSTKENTLSFGMQHALDPLTTVKARYNNHGMV 279
KG+ L ASYY +V+ T GAE++H+F+TKEN ++ G QHALDPLTTVKAR NN G+
Sbjct: 178 KGEKLNASYYQIVSPS--TVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVA 235
Query: 280 SALIQHEWRPKSFLTLSAEVDTKAIDKASKVGLSLVLKP 318
+ALIQHEWRPKSF T+S EVD+KAIDK++KVG++L LKP
Sbjct: 236 NALIQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 274
>AT5G57490.1 | chr5:23283895-23285335 REVERSE LENGTH=275
Length = 274
Score = 197 bits (500), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 108/279 (38%), Positives = 163/279 (58%), Gaps = 20/279 (7%)
Query: 48 YFEIGKKARGVHALFILFDLLYKDFHTDQKFTLTTYTNNGVVITAASTMKDEAIFSEIQT 107
+ +IGKKA+ DLL KD+ D KFTLT + G A KD+ F +I T
Sbjct: 8 FADIGKKAK---------DLLNKDYIFDHKFTLTMLSATGTEFVATGLKKDDFFFGDIST 58
Query: 108 KLKSNNVMLD--------VLTTITTEDLGVSGLKQIVSLPFPYQTAGKAELQYLHDYAGI 159
K N ++D V T +T ++L + K ++S P +GK ++QY+H +A +
Sbjct: 59 LYKGQNTIVDLKIDSHSSVSTKVTLKNL-LPSAKAVISFKIPDHKSGKLDVQYVHPHATL 117
Query: 160 SLGVGLTSKPLVNLSGVFGNKSVAVGADVAVDTSTGDFTKYDAGLTINNSDLAADLTLNN 219
+ +GL PL++LS G+++V +G +V+ DT++ TKY+AG+ NN ++A L L +
Sbjct: 118 NSSIGLNPTPLLDLSATIGSQNVCLGGEVSFDTASSSLTKYNAGIGFNNQGVSAALILED 177
Query: 220 KGDSLTASYYHLVNKESGTAAGAELTHSFSTKENTLSFGMQHALDPLTTVKARYNNHGMV 279
KG+SL A+Y H VN T+ GAEL FS N+ + G H++D T VK R++N G
Sbjct: 178 KGESLRATYVHTVNPT--TSFGAELIRRFSNYNNSFTVGSSHSVDQFTVVKTRFSNSGKA 235
Query: 280 SALIQHEWRPKSFLTLSAEVDTKAIDKASKVGLSLVLKP 318
++Q EWRPKS +T SAE D+KA+ + K+GL+L LKP
Sbjct: 236 GMVVQREWRPKSHITFSAEYDSKAVTSSPKLGLALALKP 274
>AT5G67500.2 | chr5:26935223-26937123 FORWARD LENGTH=304
Length = 303
Score = 190 bits (482), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 171/307 (55%), Gaps = 45/307 (14%)
Query: 47 LYFEIGKKARGVHALFILFDLLYKDFHTDQKFTLTTYTNNGVVITAASTMKDEAIF---- 102
L+ +IGKKA+ DLL +D+++DQKF+++TY+ +GV + +D+ F
Sbjct: 7 LFTDIGKKAK---------DLLTRDYNSDQKFSISTYSASGVGTERENEYQDDIYFCLRT 57
Query: 103 -----------------------SEIQTKLKSNNVMLDV--------LTTITTEDLGVSG 131
+++ T+ K N + DV LTT+T ++ +
Sbjct: 58 RCLIMSENEALTSTALKKGGVHAADVATQYKYKNALFDVKIDTDSSVLTTVTLTEI-LPS 116
Query: 132 LKQIVSLPFPYQTAGKAELQYLHDYAGISLGVGLTSKPLVNLSGVFGNKSVAVGADVAVD 191
K I S P + K E+QY HD+A ++ L PL++++ G+ ++ GA+ D
Sbjct: 117 TKAIASFKVPDYNSAKLEVQYFHDHATVTAAAALKQNPLIDITATLGSPVISFGAEAGYD 176
Query: 192 TSTGDFTKYDAGLTINNSDLAADLTLNNKGDSLTASYYHLVNKESGTAAGAELTHSFSTK 251
T++ FTKY+AG+++ D + L +KGDSL ASY H ++ TAA E+ FST
Sbjct: 177 TTSKTFTKYNAGISVTKPDACLSIILGDKGDSLKASYLHHFDEFKRTAAVGEVYRKFSTN 236
Query: 252 ENTLSFGMQHALDPLTTVKARYNNHGMVSALIQHEWRPKSFLTLSAEVDTKAIDKASKVG 311
ENT++ G +A+D T VKA+ NNHG + AL+QHE P+S +T+S+E+DTKA++K + G
Sbjct: 237 ENTITVGGLYAIDHSTAVKAKLNNHGTLGALLQHEVLPRSLVTVSSEIDTKALEKHPRFG 296
Query: 312 LSLVLKP 318
LSL LKP
Sbjct: 297 LSLALKP 303
>AT3G49920.1 | chr3:18505836-18507699 REVERSE LENGTH=227
Length = 226
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 138/274 (50%), Gaps = 56/274 (20%)
Query: 47 LYFEIGKKARGVHALFILFDLLYKDFHTDQKFTLTTYTNNGVVITAASTMKDEAIFSEIQ 106
L+ +IGK A+ DLL +D+ TDQKF+++T + +GV +T+ + + +
Sbjct: 7 LFADIGKYAK---------DLLTRDYSTDQKFSISTNSVSGVALTSTALKNGVLHAANVA 57
Query: 107 TKLKSNNVMLDVLTTITTEDLGVSGLKQIVSLPFPYQTAGKAELQYLHDYAGISLGVGLT 166
T+ K N DV I T+ + SL +P
Sbjct: 58 TQYKYRNTFFDV--KIDTD-------FNVKSLVYPM------------------------ 84
Query: 167 SKPLVNLSGVFGNKSVAVGADV--AVDTSTGDFTKYDAGLTINNSDLAADLTLNNKGDSL 224
NK V++ + DT++ FTKY+ G+++ D + L +KGDS+
Sbjct: 85 ------------NKFVSIDHNTLTGYDTTSRTFTKYNVGVSVTKPDQCVSIILGDKGDSI 132
Query: 225 TASYYHLVNKESGTAAGAELTHSFSTKENTLSFGMQHALDPLTTVKARYNNHGMVSALIQ 284
ASY + +++ + +A E+ ST E T++ G +A+D LT VKA+ N++G AL+Q
Sbjct: 133 KASYVYYLDESTRSATVGEVIRKISTNETTVTVGGLYAVDHLTNVKAKLNSNGKFGALLQ 192
Query: 285 HEWRPKSFLTLSAEVDTKAIDKASKVGLSLVLKP 318
HE PKS +T+S E+DTK +DK ++GLSL LKP
Sbjct: 193 HEGLPKSIVTISGEIDTKTLDKYPRLGLSLSLKP 226
>AT5G37610.1 | chr5:14938121-14938612 FORWARD LENGTH=164
Length = 163
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 153 LHDYAGISLGVGLTSKPLVNLSGVFGNKSVAVGADVAVDTSTGDFTKYDAGLTINNSDLA 212
L + A IS VGL + P+++ S VFGN G ++ +D TK + L++ D
Sbjct: 2 LSERARISTIVGLFANPILSFSAVFGNDFWRFGFELTLDLVNRIITKANTVLSLITEDTT 61
Query: 213 ADLTLNNKGDSLTASYYHLVNKESGTAAGAELTHSFSTKENTLSFGMQHAL--DPLTTVK 270
+++ K TASYY ++ S T GAE + S K N+ S G +H D L
Sbjct: 62 TTFSIDKKASLFTASYYQRLH--SKTVCGAEAKYILSDKSNSFSIGKRHLFGDDDLIQAL 119
Query: 271 ARYNNHGMVSALIQHEWRPKSFLTLSAE 298
+N G + L QH W KSF T++ E
Sbjct: 120 LSVSNGGSMRVLFQHHWTLKSFFTIAGE 147
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.130 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,149,801
Number of extensions: 235944
Number of successful extensions: 510
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 500
Number of HSP's successfully gapped: 6
Length of query: 318
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 219
Effective length of database: 8,392,385
Effective search space: 1837932315
Effective search space used: 1837932315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 112 (47.8 bits)