BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0715500 Os01g0715500|Os01g0715500
(318 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0715500 Similar to Voltage-dependent anion channel 619 e-178
Os05g0536200 Voltage-dependent anion channel 352 2e-97
Os09g0361400 Outer mitochondrial membrane protein porin (Vo... 345 3e-95
Os01g0588200 Voltage-dependent anion channel 335 2e-92
Os03g0137500 Similar to VDAC3.1 220 8e-58
Os03g0202200 Porin-like protein 188 5e-48
>Os01g0715500 Similar to Voltage-dependent anion channel
Length = 318
Score = 619 bits (1597), Expect = e-178, Method: Compositional matrix adjust.
Identities = 307/318 (96%), Positives = 307/318 (96%)
Query: 1 MEAETECKVPGVYSETGIPVEDPAPGLNSDVSKKDXXXXXXXXXXXLYFEIGKKARGVHA 60
MEAETECKVPGVYSETGIPVEDPAPGLNSDVSKKD LYFEIGKKARGVHA
Sbjct: 1 MEAETECKVPGVYSETGIPVEDPAPGLNSDVSKKDAPPAVAAPGPGLYFEIGKKARGVHA 60
Query: 61 LFILFDLLYKDFHTDQKFTLTTYTNNGVVITAASTMKDEAIFSEIQTKLKSNNVMLDVLT 120
LFILFDLLYKDFHTDQKFTLTTYTNNGVVITAASTMKDEAIFSEIQTKLKSNNVMLDVLT
Sbjct: 61 LFILFDLLYKDFHTDQKFTLTTYTNNGVVITAASTMKDEAIFSEIQTKLKSNNVMLDVLT 120
Query: 121 TITTEDLGVSGLKQIVSLPFPYQTAGKAELQYLHDYAGISLGVGLTSKPLVNLSGVFGNK 180
TITTEDLGVSGLKQIVSLPFPYQTAGKAELQYLHDYAGISLGVGLTSKPLVNLSGVFGNK
Sbjct: 121 TITTEDLGVSGLKQIVSLPFPYQTAGKAELQYLHDYAGISLGVGLTSKPLVNLSGVFGNK 180
Query: 181 SVAVGADVAVDTSTGDFTKYDAGLTINNSDLAADLTLNNKGDSLTASYYHLVNKESGTAA 240
SVAVGADVAVDTSTGDFTKYDAGLTINNSDLAADLTLNNKGDSLTASYYHLVNKESGTAA
Sbjct: 181 SVAVGADVAVDTSTGDFTKYDAGLTINNSDLAADLTLNNKGDSLTASYYHLVNKESGTAA 240
Query: 241 GAELTHSFSTKENTLSFGMQHALDPLTTVKARYNNHGMVSALIQHEWRPKSFLTLSAEVD 300
GAELTHSFSTKENTLSFGMQHALDPLTTVKARYNNHGMVSALIQHEWRPKSFLTLSAEVD
Sbjct: 241 GAELTHSFSTKENTLSFGMQHALDPLTTVKARYNNHGMVSALIQHEWRPKSFLTLSAEVD 300
Query: 301 TKAIDKASKVGLSLVLKP 318
TKAIDKASKVGLSLVLKP
Sbjct: 301 TKAIDKASKVGLSLVLKP 318
>Os05g0536200 Voltage-dependent anion channel
Length = 280
Score = 352 bits (903), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 182/280 (65%), Positives = 214/280 (76%), Gaps = 19/280 (6%)
Query: 47 LYFEIGKKARGVHALFILFDLLYKDFHTDQKFTLTTYTNNGVVITAASTMKDEAIFSEIQ 106
LY +IGKKAR DLLY+D+HTDQKFTLTTY NG IT A T K+E+IFSEIQ
Sbjct: 12 LYSDIGKKAR---------DLLYRDYHTDQKFTLTTYAANGAAITVAGTKKNESIFSEIQ 62
Query: 107 TKLKSNNVMLDV--------LTTITTEDLGVSGLKQIVSLPFPYQTAGKAELQYLHDYAG 158
+++K+NNV +DV +TT T DLG GLK I+S+PFPYQ + KAE+QYLH +AG
Sbjct: 63 SQVKNNNVSVDVKATSDSKLITTFTVHDLGTPGLKGILSIPFPYQKSAKAEVQYLHPHAG 122
Query: 159 ISLGVGLTSKPLVNLSGVFGNKSVAVGADVAVDTSTGDFTKYDAGLTINNSDLAADLTLN 218
++ VGL + PLV+ SGVFG + AVG DVA DT+TGDFTKY+AGL+ DL A L LN
Sbjct: 123 LNAIVGLNANPLVSFSGVFGTGAFAVGTDVAFDTATGDFTKYNAGLSHTTPDLTAALLLN 182
Query: 219 NKGDSLTASYYHLVNKESGTAAGAELTHSFSTKENTLSFGMQHALDPLTTVKARYNNHGM 278
NKGDSL ASYYH V+K S A GAEL HSFS+ ENTL+FG QHALD LTTVKAR+NN GM
Sbjct: 183 NKGDSLAASYYHKVSKTS--AVGAELAHSFSSNENTLTFGTQHALDELTTVKARFNNFGM 240
Query: 279 VSALIQHEWRPKSFLTLSAEVDTKAIDKASKVGLSLVLKP 318
SALIQHE+RPKS +T+S EVDTKAIDK+SKVGLSLVLKP
Sbjct: 241 ASALIQHEFRPKSLVTISTEVDTKAIDKSSKVGLSLVLKP 280
>Os09g0361400 Outer mitochondrial membrane protein porin (Voltage-dependent
anion- selective channel protein) (VDAC)
Length = 274
Score = 345 bits (884), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 175/280 (62%), Positives = 215/280 (76%), Gaps = 19/280 (6%)
Query: 47 LYFEIGKKARGVHALFILFDLLYKDFHTDQKFTLTTYTNNGVVITAASTMKDEAIFSEIQ 106
LY EIGKKAR DLLY+D+ TD KFTLTTYT+NGV ITA ST K + IF EIQ
Sbjct: 6 LYPEIGKKAR---------DLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQ 56
Query: 107 TKLKSNNVMLDV--------LTTITTEDLGVSGLKQIVSLPFPYQTAGKAELQYLHDYAG 158
+++K+ N+ +DV +TT+T ++L GLK I+S P Q +GK ELQY HDYAG
Sbjct: 57 SQIKNKNITVDVKANSDSNVVTTVTVDEL-TPGLKSILSFAVPDQRSGKFELQYSHDYAG 115
Query: 159 ISLGVGLTSKPLVNLSGVFGNKSVAVGADVAVDTSTGDFTKYDAGLTINNSDLAADLTLN 218
+S +GLT+ P+VNLS VFG K++AVGADV++DT+TG+ TKY+AGL+ +N DL A L LN
Sbjct: 116 VSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLN 175
Query: 219 NKGDSLTASYYHLVNKESGTAAGAELTHSFSTKENTLSFGMQHALDPLTTVKARYNNHGM 278
NKGDSLTASYYH+VN S TA GAELTHSFS+ EN+L+FG QH LDPLT VKAR+NN G
Sbjct: 176 NKGDSLTASYYHIVN-HSATAVGAELTHSFSSNENSLTFGTQHTLDPLTVVKARFNNSGK 234
Query: 279 VSALIQHEWRPKSFLTLSAEVDTKAIDKASKVGLSLVLKP 318
SAL+QHEWRPKS T+SAEVDTKAIDK+SKVG+++ LKP
Sbjct: 235 ASALLQHEWRPKSVWTISAEVDTKAIDKSSKVGIAVALKP 274
>Os01g0588200 Voltage-dependent anion channel
Length = 275
Score = 335 bits (859), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 170/279 (60%), Positives = 209/279 (74%), Gaps = 17/279 (6%)
Query: 47 LYFEIGKKARGVHALFILFDLLYKDFHTDQKFTLTTYTNNGVVITAASTMKDEAIFSEIQ 106
LY +IGKK R DLLY+D+ T KFTLTT T GV ITAA T K+E++F E+Q
Sbjct: 5 LYTDIGKKTR---------DLLYRDYGTHHKFTLTTCTPEGVTITAAGTRKNESVFGELQ 55
Query: 107 TKLKSNNVMLDV--------LTTITTEDLGVSGLKQIVSLPFPYQTAGKAELQYLHDYAG 158
T+LK+ + +DV LTT+T ++ G GLK I+SL P Q +GK ELQYLH+YAG
Sbjct: 56 TQLKNKKLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQRSGKLELQYLHEYAG 115
Query: 159 ISLGVGLTSKPLVNLSGVFGNKSVAVGADVAVDTSTGDFTKYDAGLTINNSDLAADLTLN 218
I+ VGL S P+VNLSGVFG+K ++VG DVA DT+T +FTKY+A L++ NSDL A L LN
Sbjct: 116 INASVGLNSNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIASLHLN 175
Query: 219 NKGDSLTASYYHLVNKESGTAAGAELTHSFSTKENTLSFGMQHALDPLTTVKARYNNHGM 278
N GD+L ASYYHLV S TA GAEL+HSFS E+TL FG QH+LDP TTVKAR+NN+GM
Sbjct: 176 NHGDTLIASYYHLVKHHSNTAVGAELSHSFSRNESTLIFGSQHSLDPHTTVKARFNNYGM 235
Query: 279 VSALIQHEWRPKSFLTLSAEVDTKAIDKASKVGLSLVLK 317
SAL+QHEWRPKS +T+S EVDTKAI+K++KVGLSLVLK
Sbjct: 236 ASALVQHEWRPKSLITISGEVDTKAIEKSTKVGLSLVLK 274
>Os03g0137500 Similar to VDAC3.1
Length = 276
Score = 220 bits (561), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 113/278 (40%), Positives = 168/278 (60%), Gaps = 16/278 (5%)
Query: 48 YFEIGKKARGVHALFILFDLLYKDFHTDQKFTLTTYTNNGVVITAASTMKDEAIFSEIQT 107
+ IGK+A+ DLLYKD++ DQKF+LTT +N+G+ +TA DE +IQT
Sbjct: 8 FLNIGKRAK---------DLLYKDYNFDQKFSLTTTSNSGLGLTATGVKIDELFIGDIQT 58
Query: 108 KLKSNNVMLDV-------LTTITTEDLGVSGLKQIVSLPFPYQTAGKAELQYLHDYAGIS 160
+ KS +DV ++T T D ++GLK S P Q +GK +LQYLHD+ ++
Sbjct: 59 QHKSGKTTVDVKIDSESRVSTTVTVDEALTGLKTSFSFRVPDQKSGKLDLQYLHDHFALN 118
Query: 161 LGVGLTSKPLVNLSGVFGNKSVAVGADVAVDTSTGDFTKYDAGLTINNSDLAADLTLNNK 220
+GLTS PL+ L+ G ++ GA+V D+++ TKY++G+ N D +A + L +K
Sbjct: 119 STIGLTSTPLIELAATIGTNELSAGAEVGFDSTSASVTKYNSGICYNKHDFSAAVLLADK 178
Query: 221 GDSLTASYYHLVNKESGTAAGAELTHSFSTKENTLSFGMQHALDPLTTVKARYNNHGMVS 280
G++L ASY H N+ +G AE+TH TKEN + G HA+D T +K R++N G V
Sbjct: 179 GETLKASYIHTFNETNGATVAAEVTHKLKTKENYFTIGSSHAIDSSTLLKTRFSNGGKVG 238
Query: 281 ALIQHEWRPKSFLTLSAEVDTKAIDKASKVGLSLVLKP 318
L QHEWRPKS +++SAE D K + S+ G+++ LKP
Sbjct: 239 VLCQHEWRPKSTVSISAEYDPKVVSSPSRFGVAIALKP 276
>Os03g0202200 Porin-like protein
Length = 277
Score = 188 bits (477), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 110/281 (39%), Positives = 165/281 (58%), Gaps = 20/281 (7%)
Query: 47 LYFEIGKKARGVHALFILFDLLYKDFHTDQKFTLTTYTNNGVVITAASTMKDEAIFSEIQ 106
L+ +IGK+A+ DLL KD+ DQK T++T +++GV +T+ + K ++
Sbjct: 8 LFSDIGKRAK---------DLLTKDYTYDQKLTVSTVSSSGVGLTSTAVKKGGLYTLDVS 58
Query: 107 TKLKSNNVMLDVL--------TTITTEDLGVSGLKQIVSLPFPYQTAGKAELQYLHDYAG 158
+ K + ++DV TT+T D+ + K + S+ P +GK E+QY H+ A
Sbjct: 59 SVYKYKSTLVDVKVDTESNISTTLTVFDV-LPSTKLVTSVKLPDYNSGKVEMQYFHENAS 117
Query: 159 ISLGVGLTSKPLVNLSGVFGNKSVAVGADVAVDTSTGDFTKYDAGLTINNSDLAADLTLN 218
+ VG+ P+V SG G + +A GA+ DT+TG FTKY A + + D A + L
Sbjct: 118 FATAVGMKPSPVVEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAIGVTKPDYHAAIVLA 177
Query: 219 NKGDSLTAS-YYHLVNKESGTAAGAELTHSFSTKENTLSFGMQHALDPLTTVKARYNNHG 277
+KGD++ S YHL +K+ + AELT ST ENTL+ G + +DP T VKAR NN G
Sbjct: 178 DKGDTVKVSGVYHLDDKQKSSVV-AELTRRLSTNENTLTVGGLYKVDPETAVKARLNNTG 236
Query: 278 MVSALIQHEWRPKSFLTLSAEVDTKAIDKASKVGLSLVLKP 318
++AL+QHE +PKS LT+S E DTKA+D+ K GL+L L+P
Sbjct: 237 KLAALLQHEVKPKSVLTISGEFDTKALDRPPKFGLALALRP 277
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.130 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,020,921
Number of extensions: 329310
Number of successful extensions: 709
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 703
Number of HSP's successfully gapped: 6
Length of query: 318
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 217
Effective length of database: 11,762,187
Effective search space: 2552394579
Effective search space used: 2552394579
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)