Os05g0536200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Voltage-dependent anion channel.
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Os05g0536200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Voltage-dependent anion channel.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.72 | 0.214 | 13.8 | 0.768 | 0.683 | 0.164 | -0.199 | -1.61 | 0.0836 | 16.7 | 19.59 | 1577 | -- | -- |
| 21.58 | 0.218 | 13.8 | 0.673 | 0.709 | 0.685 | -0.276 | -- | 0.0592 | 16.6 | 19.59 | 1577 | -- | -- |
| 20.82 | 0.212 | 13.8 | 0.764 | 0.682 | 0.164 | -- | -1.64 | 0.083 | 16.7 | 19.5 | 1556 | -- | -- |
| 21.78 | 0.219 | 13.8 | 0.671 | 0.706 | 0.682 | -- | -- | 0.0576 | 16.6 | 19.59 | 1577 | -- | -- |
| 45.24 | 0.313 | 13.8 | 0.76 | -- | 0.327 | -- | -1.38 | 0.0883 | -- | 19.94 | 1380 | -- | -- |
| 24.08 | 0.23 | 13.8 | 0.574 | 0.689 | -- | -0.269 | -- | 0.0233 | 16.7 | -- | -- | -- | -- |
| 24.26 | 0.231 | 13.8 | 0.573 | 0.687 | -- | -- | -- | 0.022 | 16.7 | -- | -- | -- | -- |
| 45.83 | 0.315 | 13.8 | 0.7 | -- | 0.832 | -- | -- | 0.0616 | -- | 19.14 | 1338 | -- | -- |
| 31.88 | 0.264 | 13.8 | -- | 0.68 | 0.725 | -- | -- | -0.0376 | 16.7 | 14.44 | 1880 | -- | -- |
| 49.27 | 0.328 | 13.8 | 0.547 | -- | -- | -- | -- | 0.00406 | -- | -- | -- | -- | -- |
| 32.91 | 0.268 | 13.8 | -- | 0.676 | -- | -- | -- | -0.0418 | 16.7 | -- | -- | -- | -- |
| 56.27 | 0.349 | 13.8 | -- | -- | 0.635 | -- | -- | -0.0498 | -- | 14.7 | 1364 | -- | -- |
| 57.16 | 0.353 | 13.8 | -- | -- | -- | -- | -- | -0.0566 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.21 | temperature | 20.0 | 270 | > th | dose independent | rect. | 10 | 17 |
| 15 | 19.22 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 21 | 8 |
| 22 | 19.33 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 15 | 11 |
| 28 | 19.34 | temperature | 15.0 | 270 | > th | dose independent | rect. | 21 | 8 |
| 63 | 19.43 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 14 | 9 |
| 71 | 19.46 | temperature | 20.0 | 30 | < th | dose dependent | sin | 15 | NA |
| 79 | 19.47 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 15 | 8 |
| 93 | 19.51 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 15 | 7 |
| 97 | 19.52 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 17 | 8 |
| 98 | 19.52 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 17 | 8 |
| 157 | 19.61 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 10 | 18 |
| 161 | 19.61 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 18 |
| 219 | 19.78 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 8 |
| 242 | 19.81 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 8 |
| 254 | 19.83 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 19 | 2 |
| 283 | 19.88 | wind | 1.0 | 270 | > th | dose independent | rect. | 15 | 9 |
| 333 | 19.94 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 15 | 19 |
| 355 | 19.96 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 8 |
| 367 | 19.97 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 17 | 17 |
| 380 | 19.98 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 12 | 17 |
| 445 | 20.02 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 21 | 1 |
| 487 | 20.04 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 12 | 17 |
| 510 | 20.06 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 16 |
| 521 | 20.06 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 19 | 15 |
| 525 | 20.07 | temperature | 20.0 | 720 | > th | dose independent | rect. | 10 | 12 |
| 526 | 20.07 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 13 | 16 |
| 542 | 20.08 | temperature | 20.0 | 720 | > th | dose independent | rect. | 16 | 6 |
| 558 | 20.10 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 12 | 17 |
| 574 | 20.11 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 6 |
| 606 | 20.14 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 9 |
| 637 | 20.17 | atmosphere | 1005.0 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 655 | 20.19 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 9 |
| 656 | 20.19 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 15 |
| 664 | 20.19 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 9 |
| 671 | 20.20 | temperature | 15.0 | 270 | > th | dose independent | rect. | 23 | 16 |
| 690 | 20.22 | temperature | 20.0 | 270 | < th | dose independent | rect. | 15 | 9 |
| 704 | 20.23 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 9 |
| 722 | 20.24 | atmosphere | 1005.0 | 720 | > th | dose dependent | rect. | 14 | 3 |
| 739 | 20.25 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 15 |
| 773 | 20.27 | temperature | 20.0 | 720 | < th | dose independent | rect. | 12 | 11 |
| 789 | 20.28 | temperature | 20.0 | 720 | < th | dose independent | rect. | 11 | 13 |
| 821 | 20.31 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 15 |
| 827 | 20.31 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 15 |
| 846 | 20.33 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 9 |
| 856 | 20.33 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 1 | 13 |
| 962 | 20.39 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 16 | 9 |
| 974 | 20.40 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 15 |