BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0588200 Os01g0588200|AK070745
(275 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G01280.1 | chr3:85754-87612 FORWARD LENGTH=277 337 3e-93
AT5G15090.1 | chr5:4889641-4891389 REVERSE LENGTH=275 308 3e-84
AT5G57490.1 | chr5:23283895-23285335 REVERSE LENGTH=275 234 3e-62
AT5G67500.2 | chr5:26935223-26937123 FORWARD LENGTH=304 219 9e-58
AT3G49920.1 | chr3:18505836-18507699 REVERSE LENGTH=227 135 2e-32
AT5G37610.1 | chr5:14938121-14938612 FORWARD LENGTH=164 77 7e-15
>AT3G01280.1 | chr3:85754-87612 FORWARD LENGTH=277
Length = 276
Score = 337 bits (865), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 165/273 (60%), Positives = 205/273 (75%), Gaps = 1/273 (0%)
Query: 2 APGLYTDIGKKTRDLLYRDYGTHHKFTLTTCTPEGVTITAAGTRKNESVFGELQTQLKNK 61
PGLYT+IGKK RDLLY+D+ + KF++TT +P GV IT+ GT+K + + G++ Q + K
Sbjct: 4 GPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSRRK 63
Query: 62 KLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQRSGKLELQYLHEYAGINASVG 121
+T D+K ++S L T TVDE PGL+SI S VPDQ SGK+ELQYLHEYAGI+ S+G
Sbjct: 64 NITTDLKVCTDSTFLITATVDE-AAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMG 122
Query: 122 LNSNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIASLHLNNHGDTL 181
L NP VN SGV GS L+VG DV+FDT + NFTK NA LS T DLIASL +N+ GD L
Sbjct: 123 LTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLL 182
Query: 182 IASYYHLVKHHSNTAVGAELSHSFSRNESTLIFGSQHSLDPHTTVKARFNNYGMASALVQ 241
ASYYH+V NTAVGAE+SH S +ST+ G+QHSLDP T+VKAR N+ G+ASAL+Q
Sbjct: 183 NASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASALIQ 242
Query: 242 HEWRPKSLITISGEVDTKAIEKSTKVGLSLVLK 274
HEW+PKS TISGEVDTK+I+KS KVGL+L LK
Sbjct: 243 HEWKPKSFFTISGEVDTKSIDKSAKVGLALALK 275
>AT5G15090.1 | chr5:4889641-4891389 REVERSE LENGTH=275
Length = 274
Score = 308 bits (788), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 151/273 (55%), Positives = 196/273 (71%), Gaps = 3/273 (1%)
Query: 2 APGLYTDIGKKTRDLLYRDYGTHHKFTLTTCTPEGVTITAAGTRKNESVFGELQTQLKNK 61
PGLYT+IGKK RDLLYRDY KF++TT + GV IT GT K G++ TQ+KN
Sbjct: 4 GPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQVKNN 63
Query: 62 KLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQRSGKLELQYLHEYAGINASVG 121
T DVK +++S LLTT+T DE PGLK I+ +PD +SGK E+QY H+YAGI+ SVG
Sbjct: 64 NFTADVKVSTDSSLLTTLTFDE-PAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVG 122
Query: 122 LNSNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIASLHLNNHGDTL 181
+ P+VN SGV G+ LS+G DVA++T + NF +NA + T DL ASL LN+ G+ L
Sbjct: 123 FTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKL 182
Query: 182 IASYYHLVKHHSNTAVGAELSHSFSRNESTLIFGSQHSLDPHTTVKARFNNYGMASALVQ 241
ASYY +V +T VGAE+SH+F+ E+ + G+QH+LDP TTVKAR NN G+A+AL+Q
Sbjct: 183 NASYYQIVS--PSTVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANALIQ 240
Query: 242 HEWRPKSLITISGEVDTKAIEKSTKVGLSLVLK 274
HEWRPKS T+SGEVD+KAI+KS KVG++L LK
Sbjct: 241 HEWRPKSFFTVSGEVDSKAIDKSAKVGIALALK 273
>AT5G57490.1 | chr5:23283895-23285335 REVERSE LENGTH=275
Length = 274
Score = 234 bits (598), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 120/273 (43%), Positives = 175/273 (64%), Gaps = 3/273 (1%)
Query: 2 APGLYTDIGKKTRDLLYRDYGTHHKFTLTTCTPEGVTITAAGTRKNESVFGELQTQLKNK 61
+P + DIGKK +DLL +DY HKFTLT + G A G +K++ FG++ T K +
Sbjct: 4 SPAPFADIGKKAKDLLNKDYIFDHKFTLTMLSATGTEFVATGLKKDDFFFGDISTLYKGQ 63
Query: 62 KLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQRSGKLELQYLHEYAGINASVG 121
VD+K +S S + T VT+ P K+++S +PD +SGKL++QY+H +A +N+S+G
Sbjct: 64 NTIVDLKIDSHSSVSTKVTLKNL-LPSAKAVISFKIPDHKSGKLDVQYVHPHATLNSSIG 122
Query: 122 LNSNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIASLHLNNHGDTL 181
LN P+++LS GS+ + +G +V+FDTA+S+ TKYNA + N + A+L L + G++L
Sbjct: 123 LNPTPLLDLSATIGSQNVCLGGEVSFDTASSSLTKYNAGIGFNNQGVSAALILEDKGESL 182
Query: 182 IASYYHLVKHHSNTAVGAELSHSFSRNESTLIFGSQHSLDPHTTVKARFNNYGMASALVQ 241
A+Y H V + T+ GAEL FS ++ GS HS+D T VK RF+N G A +VQ
Sbjct: 183 RATYVHTV--NPTTSFGAELIRRFSNYNNSFTVGSSHSVDQFTVVKTRFSNSGKAGMVVQ 240
Query: 242 HEWRPKSLITISGEVDTKAIEKSTKVGLSLVLK 274
EWRPKS IT S E D+KA+ S K+GL+L LK
Sbjct: 241 REWRPKSHITFSAEYDSKAVTSSPKLGLALALK 273
>AT5G67500.2 | chr5:26935223-26937123 FORWARD LENGTH=304
Length = 303
Score = 219 bits (559), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 119/299 (39%), Positives = 171/299 (57%), Gaps = 28/299 (9%)
Query: 3 PGLYTDIGKKTRDLLYRDYGTHHKFTLTTCTPEGV------------------------- 37
PGL+TDIGKK +DLL RDY + KF+++T + GV
Sbjct: 5 PGLFTDIGKKAKDLLTRDYNSDQKFSISTYSASGVGTERENEYQDDIYFCLRTRCLIMSE 64
Query: 38 --TITAAGTRKNESVFGELQTQLKNKKLTVDVKANSESDLLTTVTVDEFGTPGLKSILSL 95
+T+ +K ++ TQ K K DVK +++S +LTTVT+ E P K+I S
Sbjct: 65 NEALTSTALKKGGVHAADVATQYKYKNALFDVKIDTDSSVLTTVTLTEI-LPSTKAIASF 123
Query: 96 VVPDQRSGKLELQYLHEYAGINASVGLNSNPMVNLSGVFGSKELSVGVDVAFDTATSNFT 155
VPD S KLE+QY H++A + A+ L NP+++++ GS +S G + +DT + FT
Sbjct: 124 KVPDYNSAKLEVQYFHDHATVTAAAALKQNPLIDITATLGSPVISFGAEAGYDTTSKTFT 183
Query: 156 KYNAALSLTNSDLIASLHLNNHGDTLIASYYHLVKHHSNTAVGAELSHSFSRNESTLIFG 215
KYNA +S+T D S+ L + GD+L ASY H TA E+ FS NE+T+ G
Sbjct: 184 KYNAGISVTKPDACLSIILGDKGDSLKASYLHHFDEFKRTAAVGEVYRKFSTNENTITVG 243
Query: 216 SQHSLDPHTTVKARFNNYGMASALVQHEWRPKSLITISGEVDTKAIEKSTKVGLSLVLK 274
+++D T VKA+ NN+G AL+QHE P+SL+T+S E+DTKA+EK + GLSL LK
Sbjct: 244 GLYAIDHSTAVKAKLNNHGTLGALLQHEVLPRSLVTVSSEIDTKALEKHPRFGLSLALK 302
>AT3G49920.1 | chr3:18505836-18507699 REVERSE LENGTH=227
Length = 226
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 135/273 (49%), Gaps = 51/273 (18%)
Query: 2 APGLYTDIGKKTRDLLYRDYGTHHKFTLTTCTPEGVTITAAGTRKNESVFGELQTQLKNK 61
PGL+ DIGK +DLL RDY T KF+++T + GV +T+ + + TQ K +
Sbjct: 4 GPGLFADIGKYAKDLLTRDYSTDQKFSISTNSVSGVALTSTALKNGVLHAANVATQYKYR 63
Query: 62 KLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQRSGKLELQYLHEYAGINASVG 121
DVK +++ + + SLV P +N V
Sbjct: 64 NTFFDVKIDTDFN-----------------VKSLVYP-----------------MNKFVS 89
Query: 122 LNSNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIASLHLNNHGDTL 181
++ N + +DT + FTKYN +S+T D S+ L + GD++
Sbjct: 90 IDHNTLT-----------------GYDTTSRTFTKYNVGVSVTKPDQCVSIILGDKGDSI 132
Query: 182 IASYYHLVKHHSNTAVGAELSHSFSRNESTLIFGSQHSLDPHTTVKARFNNYGMASALVQ 241
ASY + + + +A E+ S NE+T+ G +++D T VKA+ N+ G AL+Q
Sbjct: 133 KASYVYYLDESTRSATVGEVIRKISTNETTVTVGGLYAVDHLTNVKAKLNSNGKFGALLQ 192
Query: 242 HEWRPKSLITISGEVDTKAIEKSTKVGLSLVLK 274
HE PKS++TISGE+DTK ++K ++GLSL LK
Sbjct: 193 HEGLPKSIVTISGEIDTKTLDKYPRLGLSLSLK 225
>AT5G37610.1 | chr5:14938121-14938612 FORWARD LENGTH=164
Length = 163
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 68/148 (45%), Gaps = 4/148 (2%)
Query: 110 LHEYAGINASVGLNSNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLI 169
L E A I+ VGL +NP+++ S VFG+ G ++ D TK N LSL D
Sbjct: 2 LSERARISTIVGLFANPILSFSAVFGNDFWRFGFELTLDLVNRIITKANTVLSLITEDTT 61
Query: 170 ASLHLNNHGDTLIASYYHLVKHHSNTAVGAELSHSFSRNESTLIFGSQHSLDPHTTVKAR 229
+ ++ ASYY + HS T GAE + S ++ G +H ++A
Sbjct: 62 TTFSIDKKASLFTASYYQ--RLHSKTVCGAEAKYILSDKSNSFSIGKRHLFGDDDLIQAL 119
Query: 230 F--NNYGMASALVQHEWRPKSLITISGE 255
+N G L QH W KS TI+GE
Sbjct: 120 LSVSNGGSMRVLFQHHWTLKSFFTIAGE 147
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.129 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,530,728
Number of extensions: 213511
Number of successful extensions: 441
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 432
Number of HSP's successfully gapped: 7
Length of query: 275
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 178
Effective length of database: 8,447,217
Effective search space: 1503604626
Effective search space used: 1503604626
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)