BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0200200 Os03g0200200|AK066091
(215 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0200200 Conserved hypothetical protein 364 e-101
Os06g0236300 Conserved hypothetical protein 77 1e-14
Os08g0420700 Conserved hypothetical protein 74 6e-14
Os09g0381600 Conserved hypothetical protein 74 9e-14
Os02g0741700 Conserved hypothetical protein 71 4e-13
>Os03g0200200 Conserved hypothetical protein
Length = 215
Score = 364 bits (934), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/215 (86%), Positives = 186/215 (86%)
Query: 1 MGNCQAAEVATVVIQHPGGGRTERAYWAMSAGAVMAANPGHYVAAVIXXXXXXXXXXXXX 60
MGNCQAAEVATVVIQHPGGGRTERAYWAMSAGAVMAANPGHYVAAVI
Sbjct: 1 MGNCQAAEVATVVIQHPGGGRTERAYWAMSAGAVMAANPGHYVAAVITSPPAAGASSATP 60
Query: 61 XXXXVKHXXXXXXXXXXXXGRVYRLVSFEEVLREFASKRHVKLSRATIKAKDDVEEETKP 120
VKH GRVYRLVSFEEVLREFASKRHVKLSRATIKAKDDVEEETKP
Sbjct: 61 AAAPVKHLKLLRPDDTLLLGRVYRLVSFEEVLREFASKRHVKLSRATIKAKDDVEEETKP 120
Query: 121 AKPRRRRGSGGIAPEEEYSSRSLAKVMRQSDEPEPVARASPSAAPKPESDIDDHADGEAA 180
AKPRRRRGSGGIAPEEEYSSRSLAKVMRQSDEPEPVARASPSAAPKPESDIDDHADGEAA
Sbjct: 121 AKPRRRRGSGGIAPEEEYSSRSLAKVMRQSDEPEPVARASPSAAPKPESDIDDHADGEAA 180
Query: 181 EPDCDLEALLPPHGVVFGRRVARQWRPALQSIAEG 215
EPDCDLEALLPPHGVVFGRRVARQWRPALQSIAEG
Sbjct: 181 EPDCDLEALLPPHGVVFGRRVARQWRPALQSIAEG 215
>Os06g0236300 Conserved hypothetical protein
Length = 189
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 1 MGNCQAAEVATVVIQHPGGGRTERAYWAMSAGAVMAANPGHYVAAVIXXXXXXXXXX--- 57
MGNCQAAE ATVV+QHPGG R ER YWA +A VM ANPGHYVA V
Sbjct: 1 MGNCQAAEAATVVVQHPGG-RVERLYWATTAAEVMRANPGHYVALVTLRVAEEKRPPPPP 59
Query: 58 -----------XXXXXXXVKHXXXXXXXXXXXXGRVYRLVSFEEVLREFASKRHVKLSRA 106
V G+ YRL++ +EV R +K+ K RA
Sbjct: 60 PPPPARAERRGTGTGTVRVTRVKLLKPRDTLLLGQAYRLITVDEVTRALQAKKEEKSRRA 119
>Os08g0420700 Conserved hypothetical protein
Length = 189
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 56/123 (45%), Gaps = 19/123 (15%)
Query: 1 MGNCQAAEVATVVIQHPGGGRTERAYWAMSAGAVMAANPGHYVAAVIXXXXXXXXXXXXX 60
MGNCQAAEVA VVIQHPGG + ER YW +A VM +NPGHYVA V+
Sbjct: 1 MGNCQAAEVAAVVIQHPGG-KVERLYWPATAADVMRSNPGHYVALVLLRVSASSSGGGGG 59
Query: 61 ------------------XXXXVKHXXXXXXXXXXXXGRVYRLVSFEEVLREFASKRHVK 102
+ G+VYRLV+ +EV + ++R K
Sbjct: 60 GKAEHSAVGAAVGDESGGAAAKITKIKLLKPKETLLLGKVYRLVTSQEVTKALQARRQEK 119
Query: 103 LSR 105
+ R
Sbjct: 120 MRR 122
>Os09g0381600 Conserved hypothetical protein
Length = 208
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 56/122 (45%), Gaps = 17/122 (13%)
Query: 1 MGNCQAAEVATVVIQHPGGGRTERAYWAMSAGAVMAANPGHYVAAVI------------- 47
MGNCQAAE A VVIQHPGG + ER YW +A VM ANPGHYVA VI
Sbjct: 1 MGNCQAAEAAAVVIQHPGG-KVERLYWPTTAADVMRANPGHYVALVILRISADKAASAAA 59
Query: 48 ---XXXXXXXXXXXXXXXXXVKHXXXXXXXXXXXXGRVYRLVSFEEVLREFASKRHVKLS 104
+ G+VYRL++ +EV + ++++ K+
Sbjct: 60 AGDNKTNAGGATGGGGGGAKITRVKLLKPKDTLLLGQVYRLITSQEVTKALRARKNEKMR 119
Query: 105 RA 106
R
Sbjct: 120 RC 121
>Os02g0741700 Conserved hypothetical protein
Length = 166
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 1 MGNCQAAEVATVVIQHPGGGRTERAYWAMSAGAVMAANPGHYVAAVIXXXXXXXXXXXXX 60
MGNCQAAE A VVIQHPGG R ER W+ SA VM ANPGHY+A V
Sbjct: 1 MGNCQAAEAAAVVIQHPGG-RVERLCWSTSAAEVMRANPGHYIALVTLRVAEERQDGDGG 59
Query: 61 XXXXVKHXXXXXX--XXXXXXGRVYRLVSFEEVLREFASKRHVKLSRATIKAKDDVEEET 118
V+ G YRL++ EV + +++ K+ KA+ +EE
Sbjct: 60 ARRTVRLTRVKLLKPKETLLLGHAYRLITTHEVTKAVQARKEEKVR----KAQQQLEESR 115
Query: 119 KPAKPR 124
+ + +
Sbjct: 116 QKLQSK 121
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.130 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,333,809
Number of extensions: 321055
Number of successful extensions: 2013
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 2007
Number of HSP's successfully gapped: 6
Length of query: 215
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 118
Effective length of database: 11,971,043
Effective search space: 1412583074
Effective search space used: 1412583074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 154 (63.9 bits)