BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0156600 Os03g0156600|AK105367
(155 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0156600 Similar to Farnesylated protein (ATFP6) 196 5e-51
Os04g0244800 Heavy metal transport/detoxification protein d... 132 7e-32
Os01g0507700 Heavy metal transport/detoxification protein d... 96 1e-20
Os03g0383900 Heavy metal transport/detoxification protein d... 95 3e-20
Os08g0403300 Heavy metal transport/detoxification protein d... 93 7e-20
Os03g0120400 Heavy metal transport/detoxification protein d... 66 9e-12
Os09g0364800 Heavy metal transport/detoxification protein d... 64 4e-11
Os01g0758000 Heavy metal transport/detoxification protein d... 63 7e-11
>Os03g0156600 Similar to Farnesylated protein (ATFP6)
Length = 155
Score = 196 bits (499), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 106/155 (68%), Positives = 106/155 (68%)
Query: 1 MGVDDIIAELRXXXXXXXXXXXXXXXXXXXXXXRMDCEGCERKVRKAVEEMKGVSSVEVD 60
MGVDDIIAELR RMDCEGCERKVRKAVEEMKGVSSVEVD
Sbjct: 1 MGVDDIIAELRVLPAKILLKKKPKQFQKVEVKVRMDCEGCERKVRKAVEEMKGVSSVEVD 60
Query: 61 AKQNKVTVTGYVEQEEVVGRLRRRAGKKAEXXXXXXXXXXXXXXXXGAYDKKAPPGYVRN 120
AKQNKVTVTGYVEQEEVVGRLRRRAGKKAE GAYDKKAPPGYVRN
Sbjct: 61 AKQNKVTVTGYVEQEEVVGRLRRRAGKKAEPWPYVPYDVVPHPYAPGAYDKKAPPGYVRN 120
Query: 121 XXXXXXXXXXXRATEEEEKLASAFSDENPNSCAVM 155
RATEEEEKLASAFSDENPNSCAVM
Sbjct: 121 ALADPDAAPLARATEEEEKLASAFSDENPNSCAVM 155
>Os04g0244800 Heavy metal transport/detoxification protein domain containing
protein
Length = 155
Score = 132 bits (333), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 89/155 (57%)
Query: 1 MGVDDIIAELRXXXXXXXXXXXXXXXXXXXXXXRMDCEGCERKVRKAVEEMKGVSSVEVD 60
MG+ D+++E R+DCEGCERK++KA+E+MKGVSSVEV
Sbjct: 1 MGIVDVVSEFCSVPRTRRHLKKRKQFQTVEMKVRIDCEGCERKIKKALEDMKGVSSVEVT 60
Query: 61 AKQNKVTVTGYVEQEEVVGRLRRRAGKKAEXXXXXXXXXXXXXXXXGAYDKKAPPGYVRN 120
AKQNKVTVTGYV+ +V+ R+ + GK+ E GAYDKKAP GYVRN
Sbjct: 61 AKQNKVTVTGYVDAGKVMRRVAYKTGKRVEPWPYVPYDTVAHPYAPGAYDKKAPAGYVRN 120
Query: 121 XXXXXXXXXXXRATEEEEKLASAFSDENPNSCAVM 155
RA+ E + +AFSDENPN+C+VM
Sbjct: 121 VVSDPSAAPLARASSTEVRYTAAFSDENPNACSVM 155
>Os01g0507700 Heavy metal transport/detoxification protein domain containing
protein
Length = 151
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 6/122 (4%)
Query: 34 RMDCEGCERKVRKAVEEMKGVSSVEVDAKQNKVTVTGYVEQEEVVGRLRRRAGKKAEXXX 93
+MDCEGCER+V+ AV+ M+GV+SV V+ KQ++ TVTGYVE +V+ R+ + GK AE
Sbjct: 36 KMDCEGCERRVKNAVKSMRGVTSVAVNPKQSRCTVTGYVEASKVLERV-KSTGKAAEMWP 94
Query: 94 XXXXXXXXXXXXXGAYDKKAPPGYVRNXXXXXXXXXXXRATEEEEKLASAFSDENPNSCA 153
GAYDKKAP G+VR + E + + FSDEN +SC+
Sbjct: 95 YVPYTMTTYPYVGGAYDKKAPAGFVRGNPAAMAD-----PSAPEVRYMTMFSDENVDSCS 149
Query: 154 VM 155
+M
Sbjct: 150 IM 151
>Os03g0383900 Heavy metal transport/detoxification protein domain containing
protein
Length = 157
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 34 RMDCEGCERKVRKAVEEMKGVSSVEVDAKQNKVTVTGYVEQEEVVGRLRRRAGKKAEXX- 92
RMDC+GCE KV+ A+ +KGV SV+++ KQ KVTV+GYVE +V+ R + GKK+E
Sbjct: 37 RMDCDGCELKVKNALSTLKGVESVKINRKQQKVTVSGYVEASKVL-RKAQSTGKKSELWP 95
Query: 93 XXXXXXXXXXXXXXGAYDKKAPPGYVRNXXXXXXXXXXXRATEEEEKLASAFSDENPNSC 152
AYD++APPG+VRN EE+L + F+DE+PN+C
Sbjct: 96 YVPYSAASQPYVAAAAYDRRAPPGHVRNVEASSAAYVSG-GGRTEERLTNLFNDEDPNAC 154
Query: 153 AVM 155
++M
Sbjct: 155 SLM 157
>Os08g0403300 Heavy metal transport/detoxification protein domain containing
protein
Length = 150
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 69/122 (56%), Gaps = 7/122 (5%)
Query: 34 RMDCEGCERKVRKAVEEMKGVSSVEVDAKQNKVTVTGYVEQEEVVGRLRRRAGKKAEXXX 93
RMDC+GCE KVR + MKGV SVE++ KQ KVTV G V+ + V+ R + GK+ E
Sbjct: 36 RMDCDGCELKVRNTLANMKGVQSVEINRKQQKVTVQGMVDTQRVLRRA-QSTGKRTE-LW 93
Query: 94 XXXXXXXXXXXXXGAYDKKAPPGYVRNXXXXXXXXXXXRATEEEEKLASAFSDENPNSCA 153
AYDKKAP G++R +EE+LA+ FSD+NPN+CA
Sbjct: 94 PYVPYTNPYVAPPAAYDKKAPNGHIRRVDAVLPV-----TPSQEERLATLFSDDNPNACA 148
Query: 154 VM 155
VM
Sbjct: 149 VM 150
>Os03g0120400 Heavy metal transport/detoxification protein domain containing
protein
Length = 193
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
Query: 34 RMDCEGCERKVRKAVEEMKGVSSVEVDAKQNKVTVTGYVEQEEVVGRLRRRAGKKAEXXX 93
RM C GCER V+ A+ +++GV SVEV+ + KVTVTGYVE++ V+ + RRAGKKAE
Sbjct: 70 RMCCSGCERVVKHALMKLRGVDSVEVELEMEKVTVTGYVERQRVLKEV-RRAGKKAEFWP 128
Query: 94 XXXXXXXXXXXXXGAYDK---KAPPGYVRNXXXXXXXXXXXRATEEEEKLASAFSDENPN 150
+D+ + Y R+ + +++ F+D++ N
Sbjct: 129 NPDLPLYFTSAKDYFHDEESFRPSYNYYRHGYNGDKHGHLPEPHRGADPVSNLFNDDDVN 188
Query: 151 SCAVM 155
+C++M
Sbjct: 189 ACSIM 193
>Os09g0364800 Heavy metal transport/detoxification protein domain containing
protein
Length = 112
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 65 KVTVTGYVEQEEVVGRLRRRAGKKAEXXXXXXXXXXXXXXXXGAYDKKAPPGYVRNXXXX 124
KVTV G+VE +VV R++ GKKAE AYDK+APPG+VR
Sbjct: 20 KVTVQGFVEPHKVVKRVQA-TGKKAEIWPYVPYTLVAHPYAAPAYDKRAPPGHVRRVDAV 78
Query: 125 XXXXXX---XRATEEEEKLASAFSDENPNSCAVM 155
A EE+L + FSDENPN+C++M
Sbjct: 79 MPVASYGSAAAAAAPEERLTTMFSDENPNACSIM 112
>Os01g0758000 Heavy metal transport/detoxification protein domain containing
protein
Length = 158
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 64/159 (40%), Gaps = 46/159 (28%)
Query: 34 RMDCEGCERKVRKAVEEMKGVSSVEVDAKQNKVTVTGYVEQEEVVGRLRRR--------- 84
MDC GCE+K+RKA++ M+GV VE+D ++ KVTV G VEQ++V+ +RR
Sbjct: 9 HMDCAGCEKKIRKAIQRMEGVDDVEIDMERQKVTVNGNVEQKKVLKAVRRTGRRAVLWPH 68
Query: 85 ----------------------------AGKKAEXXXXXXXXXXXXXXXXGAYDKKAPPG 116
AG +A G D + G
Sbjct: 69 PYTGGGVVAGGTVHVLAQQQNYHQYHPGAGVQAHAAHAARPTSSYNYYKHGYDDSRLYGG 128
Query: 117 YVRNXXXXXXXXXXXRATEEEEKLASAFSDENPNSCAVM 155
Y + RAT+ FSDENP SC+VM
Sbjct: 129 YYHH--GANSAVVGTRATD-------YFSDENPQSCSVM 158
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.128 0.351
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,343,005
Number of extensions: 83718
Number of successful extensions: 220
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 9
Length of query: 155
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 63
Effective length of database: 12,232,113
Effective search space: 770623119
Effective search space used: 770623119
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 151 (62.8 bits)