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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0383900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heavy metal transport/detoxification protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0335) R2 : 0.0174
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.201 (0.0706) R2dN8 : 0.0225 R2N8 : 0.0174
σ : 0.632
deviance : 183.09
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
176.89 0.625 2.99 -0.0707 0.0539 0.511 0.39 0.918 0.178 23.6 3.217 3 -- --
177.84 0.621 2.97 -0.0926 0.0622 0.382 0.304 -- 0.193 23 2.57 6 -- --
177.51 0.621 2.99 -0.0826 0.057 0.522 -- 0.784 0.179 23.9 3.2 3 -- --
178.19 0.622 2.97 -0.0962 0.0631 0.416 -- -- 0.195 0.668 2.504 6 -- --
177.69 0.621 2.98 -0.0888 -- 0.488 -- 0.764 0.179 -- 3.2 3 -- --
181.14 0.631 2.97 -0.187 0.124 -- -0.224 -- 0.184 16.3 -- -- -- --
181.18 0.63 2.98 -0.19 0.132 -- -- -- 0.182 17.5 -- -- -- --
178.43 0.622 2.97 -0.0838 -- 0.394 -- -- 0.2 -- 2.436 6 -- --
178.41 0.622 2.97 -- 0.066 0.438 -- -- 0.202 0.737 2.4 6 -- --
182.09 0.631 2.97 -0.194 -- -- -- -- 0.179 -- -- -- -- --
182.13 0.631 2.97 -- 0.135 -- -- -- 0.203 17.4 -- -- -- --
178.68 0.623 2.97 -- -- 0.4 -- -- 0.205 -- 2.413 6 -- --
183.09 0.632 2.97 -- -- -- -- -- 0.201 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 165.67 radiation 1.0 90 < th dose independent rect. 8 3
2 165.67 radiation 1.0 90 < th dose dependent rect. 8 3
17 172.43 wind 9.0 90 > th dose independent rect. 13 2
18 172.78 wind 9.0 90 > th dose dependent rect. 13 2
21 173.15 wind 7.0 90 > th dose dependent rect. 15 1
24 173.96 wind 9.0 90 > th dose independent rect. 15 1
28 173.98 wind 9.0 10 > th dose independent rect. 15 1
36 173.98 wind 9.0 10 > th dose dependent rect. 15 1
75 174.50 wind 3.0 30 > th dose dependent rect. 6 1
84 175.17 wind 5.0 10 > th dose dependent rect. 12 5
86 175.24 wind 9.0 90 > th dose dependent rect. 11 5
103 175.80 wind 3.0 30 > th dose independent rect. 6 1
105 175.83 radiation 1.0 1440 < th dose independent rect. 18 11
106 175.85 precipitation 0.1 90 > th dose independent rect. 23 2
107 175.85 precipitation 0.1 90 > th dose dependent rect. 23 2
114 176.11 radiation 1.0 1440 > th dose independent rect. 18 11
125 176.31 atmosphere 1010.0 10 < th dose independent rect. 6 1
126 176.32 radiation 20.0 90 < th dose independent rect. 9 8
131 176.36 atmosphere 1005.0 270 > th dose independent rect. 2 15
133 176.37 radiation 1.0 1440 < th dose independent rect. 18 9
135 176.38 radiation 1.0 1440 < th dose independent rect. 18 7
137 176.38 wind 5.0 10 > th dose independent rect. 23 18
138 176.39 radiation 1.0 1440 < th dose independent rect. 18 4
150 176.42 radiation 1.0 1440 < th dose independent rect. 18 1
156 176.44 atmosphere 1005.0 10 > th dose independent rect. 5 12
159 176.48 radiation 30.0 270 > th dose independent rect. 9 3
160 176.48 wind 7.0 30 < th dose dependent rect. 7 8
172 176.56 radiation 1.0 1440 > th dose independent rect. 18 1
184 176.57 wind 5.0 10 < th dose independent rect. 20 19
198 176.62 wind 3.0 30 > th dose dependent rect. 4 13
201 176.64 wind 5.0 10 < th dose independent rect. 7 23
206 176.66 radiation 20.0 90 < th dose independent rect. 9 3
212 176.68 wind 3.0 10 > th dose independent rect. 9 1
222 176.72 wind 5.0 30 < th dose independent rect. 7 8
223 176.73 radiation 30.0 10 > th dose independent rect. 13 1
255 176.79 wind 3.0 30 > th dose dependent rect. 9 8
257 176.80 radiation 40.0 90 < th dose independent rect. 8 23
258 176.80 wind 5.0 30 > th dose dependent rect. 23 18
264 176.82 radiation 30.0 30 > th dose independent rect. 15 22
281 176.84 atmosphere 1005.0 720 > th dose independent rect. 5 1
291 176.86 temperature 25.0 10 > th dose independent rect. 15 5
311 176.86 radiation 10.0 270 > th dose dependent rect. 6 6
331 176.88 radiation 30.0 270 > th dose dependent rect. 9 3
345 176.90 wind 9.0 10 < th dose dependent rect. 7 23
349 176.92 wind 5.0 270 > th dose independent rect. 2 15
351 176.92 wind 5.0 270 > th dose dependent rect. 2 14
353 176.93 atmosphere 1005.0 10 > th dose independent rect. 2 15
365 176.95 radiation 30.0 30 > th dose independent rect. 7 6
398 176.97 wind 1.0 720 < th dose dependent rect. 24 1
426 176.99 humidity 60.0 10 > th dose independent rect. 6 11
427 176.99 wind 5.0 10 > th dose independent rect. 4 13
428 176.99 temperature 25.0 30 > th dose dependent rect. 6 1
432 177.00 atmosphere 1005.0 1440 > th dose independent rect. 11 1
483 177.02 radiation 30.0 720 < th dose independent rect. 19 16
503 177.04 wind 5.0 10 < th dose independent rect. 20 21
511 177.05 wind 5.0 10 > th dose independent rect. 9 8
518 177.06 radiation 40.0 270 > th dose independent sin 10 NA
536 177.07 atmosphere 1010.0 30 < th dose dependent rect. 6 1
537 177.07 atmosphere 1005.0 30 > th dose dependent rect. 13 4
541 177.08 radiation 10.0 30 < th dose independent rect. 6 1
563 177.11 radiation 20.0 90 < th dose independent rect. 6 11
566 177.11 radiation 20.0 90 < th dose independent rect. 20 16
621 177.17 radiation 20.0 270 > th dose independent sin 9 NA
628 177.17 radiation 20.0 30 > th dose dependent rect. 14 23
642 177.20 radiation 10.0 270 > th dose dependent sin 9 NA
643 177.20 wind 1.0 720 < th dose dependent rect. 5 1
649 177.21 atmosphere 1005.0 1440 < th dose independent rect. 11 1
651 177.21 temperature 25.0 10 > th dose independent rect. 15 3
678 177.21 wind 3.0 10 > th dose dependent rect. 15 21
685 177.22 wind 5.0 10 < th dose independent rect. 18 23
702 177.23 temperature 30.0 10 < th dose independent rect. 6 11
791 177.26 wind 9.0 30 < th dose independent sin 21 NA
818 177.28 wind 3.0 30 > th dose independent rect. 4 6
843 177.29 atmosphere 1000.0 30 > th dose independent rect. 15 16
844 177.29 radiation 40.0 1440 < th dose independent rect. 16 16
870 177.30 wind 1.0 30 < th dose independent rect. 6 1
871 177.30 humidity 50.0 4320 > th dose independent rect. 12 1
875 177.30 radiation 40.0 270 > th dose dependent sin 10 NA
876 177.30 radiation 10.0 90 > th dose dependent sin 6 NA
886 177.31 atmosphere 1005.0 1440 > th dose independent rect. 2 10
890 177.31 wind 5.0 10 < th dose independent rect. 18 21
907 177.32 atmosphere 1005.0 30 > th dose independent rect. 13 4
969 177.34 radiation 40.0 90 > th dose independent sin 6 NA
971 177.34 temperature 15.0 1440 > th dose independent rect. 8 8
983 177.35 atmosphere 1005.0 90 > th dose independent rect. 5 17
997 177.36 humidity 90.0 720 > th dose independent rect. 2 5