BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0123500 Os03g0123500|AK060316
(287 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0123500 Similar to HOS66 protein 527 e-150
Os06g0646600 KNOX family class 2 homeodomain protein 304 4e-83
Os02g0182800 Similar to NTH23 protein 278 2e-75
Os08g0292900 OSH45 protein 264 6e-71
Os03g0771500 Knotted1-type homeobox protein OSH43 106 2e-23
Os03g0673500 99 5e-21
Os01g0302500 Knotted1-type homeobox protein OSH6 98 8e-21
Os05g0129700 KNOX class homeodomain protein (Knotted1-type ... 96 4e-20
Os07g0129700 OSH15 protein (Homeobox gene) 95 6e-20
Os03g0727000 Similar to Homeobox protein OSH1 89 4e-18
Os03g0673000 Similar to Knotted1-type homeobox protein OSH1... 72 4e-13
Os03g0727200 Similar to HOS13 protein (Fragment) 65 4e-11
>Os03g0123500 Similar to HOS66 protein
Length = 287
Score = 527 bits (1357), Expect = e-150, Method: Compositional matrix adjust.
Identities = 255/268 (95%), Positives = 255/268 (95%)
Query: 20 AEERQLLKGEIAVHPLCEQLVAAHVGCLRVATPIDHLPLIDAQLAQSSGLLHSYAAHHRP 79
AEERQLLKGEIAVHPLCEQLVAAHVGCLRVATPIDHLPLIDAQLAQSSGLLHSYAAHHRP
Sbjct: 20 AEERQLLKGEIAVHPLCEQLVAAHVGCLRVATPIDHLPLIDAQLAQSSGLLHSYAAHHRP 79
Query: 80 FLSPHDKQELDSFLAQYMMLLCSFREQLQQHVRVHAVEAVMACREIEQSLQDXXXXXXXX 139
FLSPHDKQELDSFLAQYMMLLCSFREQLQQHVRVHAVEAVMACREIEQSLQD
Sbjct: 80 FLSPHDKQELDSFLAQYMMLLCSFREQLQQHVRVHAVEAVMACREIEQSLQDLTGATLEE 139
Query: 140 XXXXXMSEDEDETAPMLEGPMDMGSDGHDLMGFGPLMPTDSERSLMERVRQELKIELKQG 199
MSEDEDETAPMLEGPMDMGSDGHDLMGFGPLMPTDSERSLMERVRQELKIELKQG
Sbjct: 140 GTGATMSEDEDETAPMLEGPMDMGSDGHDLMGFGPLMPTDSERSLMERVRQELKIELKQG 199
Query: 200 FKSRIEDVREEILRKRRAGKLPGDTTTILKQWWQQHSKWPYPTEDDKAKLVEETGLQLKQ 259
FKSRIEDVREEILRKRRAGKLPGDTTTILKQWWQQHSKWPYPTEDDKAKLVEETGLQLKQ
Sbjct: 200 FKSRIEDVREEILRKRRAGKLPGDTTTILKQWWQQHSKWPYPTEDDKAKLVEETGLQLKQ 259
Query: 260 INNWFINQRKRNWHNNSQTSTLKSKRKR 287
INNWFINQRKRNWHNNSQTSTLKSKRKR
Sbjct: 260 INNWFINQRKRNWHNNSQTSTLKSKRKR 287
>Os06g0646600 KNOX family class 2 homeodomain protein
Length = 317
Score = 304 bits (779), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 156/252 (61%), Positives = 184/252 (73%), Gaps = 4/252 (1%)
Query: 27 KGEIAVHPLCEQLVAAHVGCLRVATPIDHLPLIDAQLAQSSGLLHSYAAHHRPFLSPHDK 86
K IA HPL E+L+ AHV CLRVATP+D LP IDAQ+A L + A +
Sbjct: 48 KAAIAAHPLYERLLEAHVACLRVATPVDQLPRIDAQIAARPPPLAAATAAAAAAAAGGAP 107
Query: 87 ---QELDSFLAQYMMLLCSFREQLQQHVRVHAVEAVMACREIEQSLQDXXXXXXXXXXXX 143
+ELD F+ Y++LLCSF+EQLQQHVRVHA+EAVMAC E+EQ+LQ
Sbjct: 108 SGGEELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQTLQSLTGASPREGSGA 167
Query: 144 XMSEDEDETAPMLEGPMDMGSDGHDLMGFGPLMPTDSERSLMERVRQELKIELKQGFKSR 203
MS+DED E M G+DG D MGFGPLM T+ ERSL+ERVRQELK ELKQG++ +
Sbjct: 168 TMSDDEDNQVDS-ESNMFDGNDGSDGMGFGPLMLTEGERSLVERVRQELKHELKQGYREK 226
Query: 204 IEDVREEILRKRRAGKLPGDTTTILKQWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNW 263
+ D+REEILRKRRAGKLPGDT + LK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQINNW
Sbjct: 227 LVDIREEILRKRRAGKLPGDTASTLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNW 286
Query: 264 FINQRKRNWHNN 275
FINQRKRNWH+N
Sbjct: 287 FINQRKRNWHSN 298
>Os02g0182800 Similar to NTH23 protein
Length = 212
Score = 278 bits (712), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 135/201 (67%), Positives = 157/201 (78%), Gaps = 1/201 (0%)
Query: 87 QELDSFLAQYMMLLCSFREQLQQHVRVHAVEAVMACREIEQSLQDXXXXXXXXXXXXXMS 146
+ELD F+ Y++LLCSF+EQLQQHVRVHA+EAVM C E+EQSLQ MS
Sbjct: 1 EELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMGCWELEQSLQSLTGASPGEGTGATMS 60
Query: 147 EDEDETAPMLEGPMDMGSDGHDLMGFGPLMPTDSERSLMERVRQELKIELKQGFKSRIED 206
+DED E M G+DG D MGFGPLM T+ ERSL+ERVR ELK ELKQG+K ++ D
Sbjct: 61 DDEDNQVDS-EANMFDGNDGSDGMGFGPLMLTEGERSLVERVRHELKNELKQGYKEKLVD 119
Query: 207 VREEILRKRRAGKLPGDTTTILKQWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFIN 266
+REEILRKRRAGKLPGDT +ILK WWQ HSKWPYPTEDDKA+LV+ETGLQLKQINNWFIN
Sbjct: 120 IREEILRKRRAGKLPGDTASILKAWWQAHSKWPYPTEDDKARLVQETGLQLKQINNWFIN 179
Query: 267 QRKRNWHNNSQTSTLKSKRKR 287
QRKRNWH+N +S K+K+KR
Sbjct: 180 QRKRNWHSNPASSGEKTKKKR 200
>Os08g0292900 OSH45 protein
Length = 194
Score = 264 bits (674), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 130/196 (66%), Positives = 154/196 (78%), Gaps = 3/196 (1%)
Query: 93 LAQYMMLLCSFREQLQQHVRVHAVEAVMACREIEQSLQDXXXXXXXXXXXXXMSEDEDET 152
+ Y++LLCSF+EQLQQHVRVHA+EAVMAC E+EQ+LQ MS+ ED+
Sbjct: 1 MTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQNLQSLTGASPGEGTGATMSDGEDDQ 60
Query: 153 APMLEGPMDMGSDGHDLMGFGPLMPTDSERSLMERVRQELKIELKQGFKSRIEDVREEIL 212
A D DG D MGFG +PT+SERSLMERVRQELK ELKQG+K ++ D+REEIL
Sbjct: 61 ADSEANMYDPSLDGADNMGFG--LPTESERSLMERVRQELKHELKQGYKEKLIDIREEIL 118
Query: 213 RKRRAGKLPGDTTTILKQWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 272
RKRRAGKLPGDTT+ LK WWQ H+KWPYPTE+DKA+LV+ETGLQLKQINNWFINQRKRNW
Sbjct: 119 RKRRAGKLPGDTTSTLKAWWQSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 178
Query: 273 HNNSQTST-LKSKRKR 287
H+N +ST +K+KRKR
Sbjct: 179 HSNPSSSTSVKTKRKR 194
>Os03g0771500 Knotted1-type homeobox protein OSH43
Length = 341
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 114/258 (44%), Gaps = 47/258 (18%)
Query: 26 LKGEIAVHPLCEQLVAAHVGCLRVATPIDHLPLIDAQLAQSSGLLHSYAAHHRPFLSPH- 84
+K EI HP L+AA++GC +V P D L + A A L H R P
Sbjct: 83 VKAEIMSHPQYSALLAAYLGCKKVGAPPDVLTKLTAVPAAQQ--LDEADGHPRRRHEPQR 140
Query: 85 --DKQELDSFLAQYMMLLCSFREQLQQHVRVHAVEAVMACREIEQSLQDXXXXXXXXXXX 142
D +LD F+ Y +L +RE+L++ + +EA +E L
Sbjct: 141 DDDPDQLDQFMDAYCSMLTRYREELERPI----LEAAEFFSRVETQLDS----------- 185
Query: 143 XXMSEDEDETAPMLEGPMDMGSDGHDLMGFGPLMPTDSERSLMERVRQELKIELKQGFKS 202
++E E E D P+D ++LK +L + +
Sbjct: 186 --LAESNCEGTGSSEEEQD---------------PSD----------KQLKHQLLRKYGG 218
Query: 203 RIEDVREEILRKRRAGKLPGDTTTILKQWWQQHSKWPYPTEDDKAKLVEETGLQLKQINN 262
+ D+R+ ++ + GKLP + L WW+ H KWPYP+E +K L + TGL KQINN
Sbjct: 219 SLGDLRQVFSKRTKKGKLPKEARQKLLHWWELHYKWPYPSEMEKMTLAQTTGLDQKQINN 278
Query: 263 WFINQRKRNWHNNSQTST 280
WFINQRKR+W T
Sbjct: 279 WFINQRKRHWKPTPVAGT 296
>Os03g0673500
Length = 337
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 110/250 (44%), Gaps = 33/250 (13%)
Query: 25 LLKGEIAVHPLCEQLVAAHVGCLRVATPIDHLPLIDAQLAQSSGLLHSYAAHHRPFLSPH 84
++K +I HPL L+ A V C +V P + + + + LA + + P P
Sbjct: 70 MIKAKIMSHPLYPSLLRAFVDCKKVGAPPEVVGRLSS-LAVVTDVPQYSGDRCLPAQQPA 128
Query: 85 DKQELDSFLAQYMMLLCSFREQLQQHVRVHAVEAVMACREIEQSLQDXXXXXXXXXXXXX 144
ELD F+ Y +L + ++L + ++ EA R IE+ +
Sbjct: 129 ADPELDQFMETYCYMLTRYGQELARPIQ----EAEEFFRGIEEQIDS------------- 171
Query: 145 MSEDEDETAPMLEGPMDMGSDGHDLMGFGPLMPTDSERSLMERVRQELKIELKQGFKSRI 204
++ DED + D D + G +P S V + L + +
Sbjct: 172 LALDED-----------VSYDYEDEVAGG--LPEKSAAFGENEVTTTTRRHLMNKYSGYL 218
Query: 205 EDVREEILRKRR--AGKLPGDTTTILKQWWQQHSKWPYPTEDDKAKLVEETGLQLKQINN 262
+ EI K++ G LP D L QWW H +WPYP+E +KA L E TGL KQ+ N
Sbjct: 219 NSLWTEISNKKKNSTGHLPRDARHKLLQWWHLHYRWPYPSEAEKAALAESTGLDKKQVTN 278
Query: 263 WFINQRKRNW 272
WFINQRKR+W
Sbjct: 279 WFINQRKRHW 288
>Os01g0302500 Knotted1-type homeobox protein OSH6
Length = 301
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 115/249 (46%), Gaps = 20/249 (8%)
Query: 24 QLLKGEIAVHPLCEQLVAAHVGCLRVATPIDHLPLIDAQLAQSSGLLHSYAAHHRPFLSP 83
+L+K +IA HP L++A++ C +V P + L+ ++ + + + P
Sbjct: 41 ELMKAQIAGHPRYPTLLSAYIECRKVGAPPEVASLLK-EIGRERRAGGGGGGAGQIGVDP 99
Query: 84 HDKQELDSFLAQYMMLLCSFREQLQQHVRVHAVEAVMACREIEQSLQDXXXXXXXXXXXX 143
ELD F+ Y +L ++E+L + EA I+ L +
Sbjct: 100 ----ELDEFMEAYCRVLVRYKEELSRPFD----EAASFLSSIQTQLSNLCSGATSPPATT 151
Query: 144 XMSEDEDETAPMLEGPMDMGSDGHDLMGFGPLMPTDSERSLMERVRQELKIELKQGFKSR 203
DE M SD G ++ E+S ELK L + +
Sbjct: 152 ATHSDE----------MVGSSDEDQCSGETDMLDIGQEQS-SRLADHELKEMLLKKYSGC 200
Query: 204 IEDVREEILRKRRAGKLPGDTTTILKQWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNW 263
+ +R E L+KR+ GKLP D + L +WW H +WPYPTE+DK +L TGL KQINNW
Sbjct: 201 LSRLRSEFLKKRKKGKLPKDARSALLEWWNTHYRWPYPTEEDKLRLAARTGLDPKQINNW 260
Query: 264 FINQRKRNW 272
FINQRKR+W
Sbjct: 261 FINQRKRHW 269
>Os05g0129700 KNOX class homeodomain protein (Knotted1-type homeobox protein
OSH71)
Length = 311
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 111/249 (44%), Gaps = 23/249 (9%)
Query: 24 QLLKGEIAVHPLCEQLVAAHVGCLRVATPIDHLPLIDAQLAQSSGLLHSYAAHHRPFLSP 83
+L+K +IA HP L++A++ C +V P + L++ + G A L P
Sbjct: 53 ELMKAQIAGHPSYPSLLSAYIECRKVGAPPEVTTLLEEIGREGRGGGGGATAGGEIGLDP 112
Query: 84 HDKQELDSFLAQYMMLLCSFREQLQQHVRVHAVEAVMACREIEQSLQDXXXXXXXXXXXX 143
ELD F+ Y +L ++E+L + A ++
Sbjct: 113 ----ELDEFMETYCRVLERYKEELTRPFDEAASFLTGIHTQLASLCGGAPPPTDNSDEMV 168
Query: 144 XMSEDEDETAPMLEGPMDMGSDGHDLMGFGPLMPTDSERSLMERVRQELKIELKQGFKSR 203
SEDE P +D D FG + ELK L + +
Sbjct: 169 GSSEDE---------PCSGDADAAD---FG-------QEHSSRLADHELKEMLLKKYSGC 209
Query: 204 IEDVREEILRKRRAGKLPGDTTTILKQWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNW 263
+ +R E L+KR+ GKLP D + L WW H +WPYPTE+DK +L TGL KQINNW
Sbjct: 210 LSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKVRLAAMTGLDPKQINNW 269
Query: 264 FINQRKRNW 272
FINQRKR+W
Sbjct: 270 FINQRKRHW 278
>Os07g0129700 OSH15 protein (Homeobox gene)
Length = 355
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 118/255 (46%), Gaps = 24/255 (9%)
Query: 20 AEERQLLKGEIAVHPLCEQLVAAHVGCLRVATPIDHLPLIDAQLAQSSGLLHSYAAHHRP 79
A E + +K +I HP L+AA++ C +V P + L + A A+ RP
Sbjct: 85 AAEAESIKAKIMAHPQYSALLAAYLDCQKVGAPPEVLERLTATAAKLDA---------RP 135
Query: 80 FLSPHDKQ--ELDSFLAQYMMLLCSFREQLQQHVRVHAVEAVMACREIEQSLQDXXXXXX 137
HD + ELD F+ Y +L +RE+L + + A+E + ++
Sbjct: 136 -PGRHDARDPELDQFMEAYCNMLAKYREELTRPID-EAMEFLKRVESQLDTIAGGAHGGG 193
Query: 138 XXXXXXXMSEDEDETAPMLEGPMDMGSDGHDLMGFGPLMPTDSERSLMERVRQELKIELK 197
+++ + E E MD ++ P +ELK +L
Sbjct: 194 AGSARLLLADGKSECVGSSEDDMDPSGRENEPPEIDP-----------RAEDKELKFQLL 242
Query: 198 QGFKSRIEDVREEILRKRRAGKLPGDTTTILKQWWQQHSKWPYPTEDDKAKLVEETGLQL 257
+ + + +R+E +K++ GKLP + L WW+ H KWPYP+E +K L E TGL
Sbjct: 243 KKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAESTGLDQ 302
Query: 258 KQINNWFINQRKRNW 272
KQINNWFINQRKR+W
Sbjct: 303 KQINNWFINQRKRHW 317
>Os03g0727000 Similar to Homeobox protein OSH1
Length = 269
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 105/230 (45%), Gaps = 27/230 (11%)
Query: 43 HVGCLRVATPIDHLPLIDAQLAQSSGLLHSYAAHHRPFLSPHDKQELDSFLAQYMMLLCS 102
++ C +V P P + A+L + L L + ELD F+ Y +L
Sbjct: 29 YLDCQKVGAP----PEVAARLTAVAQDLELRQRTALGVLGAATEPELDQFMEAYHEMLVK 84
Query: 103 FREQLQQHVRVHAVEAVMACREIEQSLQDXXXXXXXXXXXXXMSEDEDETAPMLEGPMDM 162
+RE+L + ++ EA+ R +E L + L +
Sbjct: 85 YREELTRPLQ----EAMEFLRRVETQLNTLSI-----------------SGRSLRNILSS 123
Query: 163 GSDGHDLMGFGPLMPTDSERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPG 222
GS D G G T+ V QELK L + + + +++E+ +K++ GKLP
Sbjct: 124 GSSEEDQEGSGG--ETELPEIDAHGVDQELKHHLLKKYSGYLSSLKQELSKKKKKGKLPK 181
Query: 223 DTTTILKQWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNW 272
D L WW+ H KWPYP+E K L E TGL LKQINNWFINQRKR+W
Sbjct: 182 DARQQLLNWWELHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHW 231
>Os03g0673000 Similar to Knotted1-type homeobox protein OSH10 (Fragment)
Length = 77
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 48/77 (62%)
Query: 191 ELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTILKQWWQQHSKWPYPTEDDKAKLV 250
ELK L + + + E+ +K++ GKLP D L WWQ H +WPYP+E +KA L
Sbjct: 1 ELKSHLLNKYSGYLSSLWRELSKKKKKGKLPRDARQKLLHWWQLHYRWPYPSELEKAALA 60
Query: 251 EETGLQLKQINNWFINQ 267
E TGL KQINNWFINQ
Sbjct: 61 ESTGLDAKQINNWFINQ 77
>Os03g0727200 Similar to HOS13 protein (Fragment)
Length = 365
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 53/81 (65%)
Query: 192 LKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTILKQWWQQHSKWPYPTEDDKAKLVE 251
LK L + + + +R+E+ +KR+ GKLP + L WW+ H +WP P+E +K L E
Sbjct: 228 LKRHLLRKYSGYLGGLRKELSKKRKKGKLPKEARQKLLTWWELHYRWPNPSEMEKIALAE 287
Query: 252 ETGLQLKQINNWFINQRKRNW 272
TGL+ KQINN FINQRKR+W
Sbjct: 288 STGLEQKQINNCFINQRKRHW 308
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,906,132
Number of extensions: 361920
Number of successful extensions: 1125
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 1117
Number of HSP's successfully gapped: 12
Length of query: 287
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 187
Effective length of database: 11,814,401
Effective search space: 2209292987
Effective search space used: 2209292987
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)