BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0120300 Os03g0120300|AK066854
(281 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0120300 Protein of unknown function DUF1084 family pro... 519 e-147
Os10g0537500 Protein of unknown function DUF1084 family pro... 456 e-128
Os02g0683900 Protein of unknown function DUF1084 family pro... 349 2e-96
Os07g0102400 Protein of unknown function DUF1084 family pro... 285 2e-77
Os03g0565600 Protein of unknown function DUF1084 family pro... 83 2e-16
>Os03g0120300 Protein of unknown function DUF1084 family protein
Length = 281
Score = 519 bits (1336), Expect = e-147, Method: Compositional matrix adjust.
Identities = 253/271 (93%), Positives = 253/271 (93%)
Query: 11 PDWWNDVNNSPMWQDRSFHALATLYGAVSFVALVQLIRIECRVPEYGWTTQKVFHFMNFI 70
PDWWNDVNNSPMWQDRSFHALATLYGAVSFVALVQLIRIECRVPEYGWTTQKVFHFMNFI
Sbjct: 11 PDWWNDVNNSPMWQDRSFHALATLYGAVSFVALVQLIRIECRVPEYGWTTQKVFHFMNFI 70
Query: 71 VNGVRSIVFVLRRDVQLVQPEVFQHVLIDFPGLAFFTTYALLVLFWAEIYYQARAMSTDG 130
VNGVRSIVFVLRRDVQLVQPEVFQHVLIDFPGLAFFTTYALLVLFWAEIYYQARAMSTDG
Sbjct: 71 VNGVRSIVFVLRRDVQLVQPEVFQHVLIDFPGLAFFTTYALLVLFWAEIYYQARAMSTDG 130
Query: 131 LRPAFYTINGVVYAIQIILWMALWWKPVRAMVILSKMFFAATSXXXXXXXXXXXXXXXXX 190
LRPAFYTINGVVYAIQIILWMALWWKPVRAMVILSKMFFAATS
Sbjct: 131 LRPAFYTINGVVYAIQIILWMALWWKPVRAMVILSKMFFAATSLFAALGFLLYGGRLFLM 190
Query: 191 XQRFPVESKGRRKKLNEVGYVTTICFSGFLIRCVMMCLNAFDKEADLDVLNHPILNFFYY 250
QRFPVESKGRRKKLNEVGYVTTICFSGFLIRCVMMCLNAFDKEADLDVLNHPILNFFYY
Sbjct: 191 LQRFPVESKGRRKKLNEVGYVTTICFSGFLIRCVMMCLNAFDKEADLDVLNHPILNFFYY 250
Query: 251 LLVEIVPSALVLFILRKLPPKRGITQYHPIH 281
LLVEIVPSALVLFILRKLPPKRGITQYHPIH
Sbjct: 251 LLVEIVPSALVLFILRKLPPKRGITQYHPIH 281
>Os10g0537500 Protein of unknown function DUF1084 family protein
Length = 340
Score = 456 bits (1172), Expect = e-128, Method: Compositional matrix adjust.
Identities = 219/269 (81%), Positives = 230/269 (85%)
Query: 13 WWNDVNNSPMWQDRSFHALATLYGAVSFVALVQLIRIECRVPEYGWTTQKVFHFMNFIVN 72
WW DVN SP+WQDR FH LA LYG VS +ALVQLIRIECRVPEYGWTTQKVFHF+NF+VN
Sbjct: 72 WWRDVNESPVWQDRIFHVLAALYGFVSAIALVQLIRIECRVPEYGWTTQKVFHFLNFLVN 131
Query: 73 GVRSIVFVLRRDVQLVQPEVFQHVLIDFPGLAFFTTYALLVLFWAEIYYQARAMSTDGLR 132
GVRSIVFVLRR+VQL+ PE+ QHVL+D PGLAFFTTYALLVLFWAEIYYQARAMSTDGLR
Sbjct: 132 GVRSIVFVLRRNVQLIHPEILQHVLLDMPGLAFFTTYALLVLFWAEIYYQARAMSTDGLR 191
Query: 133 PAFYTINGVVYAIQIILWMALWWKPVRAMVILSKMFFAATSXXXXXXXXXXXXXXXXXXQ 192
P FY IN V+YAIQIILWM LWWKPVR M+ILSKMFFA S Q
Sbjct: 192 PTFYWINAVIYAIQIILWMVLWWKPVRVMIILSKMFFAGVSLFAAFGFLLYGGRLFLMLQ 251
Query: 193 RFPVESKGRRKKLNEVGYVTTICFSGFLIRCVMMCLNAFDKEADLDVLNHPILNFFYYLL 252
RFPVESKGRRKKL EVGYVTTICF+ FLIRCVMMCLN FDK ADLDVLNHPILNFFYYLL
Sbjct: 252 RFPVESKGRRKKLQEVGYVTTICFTCFLIRCVMMCLNTFDKAADLDVLNHPILNFFYYLL 311
Query: 253 VEIVPSALVLFILRKLPPKRGITQYHPIH 281
VEIVPSALVLFILRKLPPKRGITQYHPIH
Sbjct: 312 VEIVPSALVLFILRKLPPKRGITQYHPIH 340
>Os02g0683900 Protein of unknown function DUF1084 family protein
Length = 284
Score = 349 bits (895), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 161/270 (59%), Positives = 200/270 (74%)
Query: 12 DWWNDVNNSPMWQDRSFHALATLYGAVSFVALVQLIRIECRVPEYGWTTQKVFHFMNFIV 71
WW+ VN S WQD F +LA LYG V+ + +Q++RI+ RVPEYGWTTQKVF +NFIV
Sbjct: 13 GWWDLVNGSTAWQDGIFLSLAALYGLVAASSFIQVVRIQYRVPEYGWTTQKVFQLLNFIV 72
Query: 72 NGVRSIVFVLRRDVQLVQPEVFQHVLIDFPGLAFFTTYALLVLFWAEIYYQARAMSTDGL 131
NG R +F +RR VQ V PE+FQHV++D PGLAFFTTYA+L LFWAEI YQAR + T+GL
Sbjct: 73 NGARCSIFAVRRQVQQVNPEIFQHVILDLPGLAFFTTYAMLALFWAEISYQARGLETEGL 132
Query: 132 RPAFYTINGVVYAIQIILWMALWWKPVRAMVILSKMFFAATSXXXXXXXXXXXXXXXXXX 191
R FYTINGV+Y IQ++LW LW P +M++LSK+F A S
Sbjct: 133 RSGFYTINGVIYVIQVLLWALLWHNPNPSMIVLSKLFIAGLSFSAALGFLLYGGRLFFML 192
Query: 192 QRFPVESKGRRKKLNEVGYVTTICFSGFLIRCVMMCLNAFDKEADLDVLNHPILNFFYYL 251
+RFP+ESKGR+KKL EVG V TICF FL RC+MMC +AFDK+ADLDVL+HPILNF YYL
Sbjct: 193 KRFPIESKGRQKKLREVGRVATICFLCFLARCIMMCFDAFDKKADLDVLDHPILNFIYYL 252
Query: 252 LVEIVPSALVLFILRKLPPKRGITQYHPIH 281
+VEI+PS+LVLFILR++P K + QYHP++
Sbjct: 253 IVEILPSSLVLFILRRIPSKLRLAQYHPLN 282
>Os07g0102400 Protein of unknown function DUF1084 family protein
Length = 286
Score = 285 bits (729), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 145/269 (53%), Positives = 192/269 (71%)
Query: 13 WWNDVNNSPMWQDRSFHALATLYGAVSFVALVQLIRIECRVPEYGWTTQKVFHFMNFIVN 72
+W +VN SP WQD +F +L+ Y VS VAL+QLIRI+ RVPE+GWTTQKVFH MNF+VN
Sbjct: 18 FWEEVNESPAWQDGAFFSLSAAYALVSAVALIQLIRIQRRVPEFGWTTQKVFHLMNFLVN 77
Query: 73 GVRSIVFVLRRDVQLVQPEVFQHVLIDFPGLAFFTTYALLVLFWAEIYYQARAMSTDGLR 132
GVR++VF V L+ +V++ VL+D PGL FF+TY LLVLFWAEIY+QAR++ TD LR
Sbjct: 78 GVRALVFGFHLHVFLLSAKVYKLVLLDLPGLLFFSTYTLLVLFWAEIYHQARSLPTDKLR 137
Query: 133 PAFYTINGVVYAIQIILWMALWWKPVRAMVILSKMFFAATSXXXXXXXXXXXXXXXXXXQ 192
+ +N ++Y IQ+ +W+ L + ++SK+F S +
Sbjct: 138 IIYIAVNAIIYTIQVCIWVYLGINDNPLVELVSKIFIVVVSFVALLGFSVYGGRLFFLLR 197
Query: 193 RFPVESKGRRKKLNEVGYVTTICFSGFLIRCVMMCLNAFDKEADLDVLNHPILNFFYYLL 252
RFP+ESKGR+KKL EVG VT IC + FLIRC+++ ++AFD + L+VL+HPIL+FFYY+L
Sbjct: 198 RFPIESKGRKKKLYEVGTVTAICCACFLIRCIVVAISAFDSDVSLEVLDHPILDFFYYML 257
Query: 253 VEIVPSALVLFILRKLPPKRGITQYHPIH 281
EI+PSALVLFILRKLPPKR QYHPI+
Sbjct: 258 TEILPSALVLFILRKLPPKRVSAQYHPIN 286
>Os03g0565600 Protein of unknown function DUF1084 family protein
Length = 56
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 47/55 (85%)
Query: 226 MCLNAFDKEADLDVLNHPILNFFYYLLVEIVPSALVLFILRKLPPKRGITQYHPI 280
+ +++FD + L+VL+HPIL+FFYY+L EI+PSALVLFILRKLPPKR QYHPI
Sbjct: 1 VAMSSFDPDLSLEVLDHPILDFFYYMLTEILPSALVLFILRKLPPKRVSAQYHPI 55
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.331 0.142 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,303,464
Number of extensions: 285618
Number of successful extensions: 760
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 756
Number of HSP's successfully gapped: 5
Length of query: 281
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 181
Effective length of database: 11,814,401
Effective search space: 2138406581
Effective search space used: 2138406581
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 155 (64.3 bits)