BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0825600 Os02g0825600|AK066738
(169 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0825600 Similar to Plasma membrane H+ ATPase (EC 3.6.3.6) 137 5e-33
Os07g0191200 Plasma membrane H+ ATPase (EC 3.6.3.6) 80 9e-16
Os12g0638700 Plasma membrane H+ ATPase (EC 3.6.3.6) 71 4e-13
Os03g0689300 Plasma membrane H+ ATPase (EC 3.6.3.6) (H-ATPase) 70 1e-12
Os06g0181500 Similar to Plasma membrane H+-ATPase (EC 3.6.1.3) 67 6e-12
>Os02g0825600 Similar to Plasma membrane H+ ATPase (EC 3.6.3.6)
Length = 169
Score = 137 bits (344), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/78 (87%), Positives = 68/78 (87%)
Query: 92 SSLSIAVSGWLTSTNAEQCLNLFGPNKLKEKKESKFLRFMWNPLSWVMEXXXXXXXXXXN 151
SSLSIAVSGWLTSTNAEQCLNLFGPNKLKEKKESKFLRFMWNPLSWVME N
Sbjct: 92 SSLSIAVSGWLTSTNAEQCLNLFGPNKLKEKKESKFLRFMWNPLSWVMEAAAIMAIALAN 151
Query: 152 GGGSCRAGRTSWASSHCS 169
GGGSCRAGRTSWASSHCS
Sbjct: 152 GGGSCRAGRTSWASSHCS 169
>Os07g0191200 Plasma membrane H+ ATPase (EC 3.6.3.6)
Length = 957
Score = 79.7 bits (195), Expect = 9e-16, Method: Composition-based stats.
Identities = 38/56 (67%), Positives = 41/56 (73%), Gaps = 3/56 (5%)
Query: 102 LTSTNAEQCLNLFGPNKLKEKKESKFLR---FMWNPLSWVMEXXXXXXXXXXNGGG 154
LTS NAEQ LNLFGPN+L+EKKESKFL+ FMWNPLSWVME NGGG
Sbjct: 37 LTSANAEQRLNLFGPNRLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGG 92
>Os12g0638700 Plasma membrane H+ ATPase (EC 3.6.3.6)
Length = 956
Score = 70.9 bits (172), Expect = 4e-13, Method: Composition-based stats.
Identities = 33/56 (58%), Positives = 39/56 (69%), Gaps = 3/56 (5%)
Query: 102 LTSTNAEQCLNLFGPNKLKEKKESKFLR---FMWNPLSWVMEXXXXXXXXXXNGGG 154
LT+ A+Q L +FGPNKL+EK+ESKFL+ FMWNPLSWVME NGGG
Sbjct: 37 LTTQQAQQRLEIFGPNKLEEKEESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGG 92
>Os03g0689300 Plasma membrane H+ ATPase (EC 3.6.3.6) (H-ATPase)
Length = 956
Score = 69.7 bits (169), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/56 (60%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Query: 102 LTSTNAEQCLNLFGPNKLKEKKESKFLR---FMWNPLSWVMEXXXXXXXXXXNGGG 154
LTS A+ L LFGPNKL+EK+ESKFL+ FMWNPLSWVME NGGG
Sbjct: 37 LTSEEAQLRLQLFGPNKLEEKEESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGG 92
>Os06g0181500 Similar to Plasma membrane H+-ATPase (EC 3.6.1.3)
Length = 859
Score = 67.0 bits (162), Expect = 6e-12, Method: Composition-based stats.
Identities = 33/56 (58%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 102 LTSTNAEQCLNLFGPNKLKEKKESK---FLRFMWNPLSWVMEXXXXXXXXXXNGGG 154
LT E L L+GPNKL+EKKESK FL FMWNPLSWVME NGGG
Sbjct: 36 LTGAEGESRLRLYGPNKLEEKKESKLLKFLGFMWNPLSWVMEIAAIMAIVLANGGG 91
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.126 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,746,128
Number of extensions: 73412
Number of successful extensions: 137
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 5
Length of query: 169
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 75
Effective length of database: 12,127,685
Effective search space: 909576375
Effective search space used: 909576375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 152 (63.2 bits)