Os06g0181500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Plasma membrane H+-ATPase (EC 3.6.1.3).
FiT-DB / Search/ Help/ Sample detail
|
Os06g0181500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Plasma membrane H+-ATPase (EC 3.6.1.3).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.76 | 0.366 | 8.04 | 0.176 | 0.415 | -0.949 | 0.0184 | -1.27 | -0.349 | 4.89 | 20.8 | 1235 | -- | -- |
| 62.5 | 0.368 | 7.99 | 0.367 | 0.382 | -0.693 | -0.0689 | -- | -0.272 | 4.69 | 21.95 | 984 | -- | -- |
| 58.93 | 0.358 | 8.03 | 0.0379 | 0.392 | -0.743 | -- | -1.11 | -0.347 | 4.16 | 21.85 | 929 | -- | -- |
| 62.26 | 0.368 | 8 | 0.335 | 0.383 | -0.681 | -- | -- | -0.273 | 4.15 | 22.06 | 880 | -- | -- |
| 66.65 | 0.38 | 8.04 | 0.074 | -- | -0.718 | -- | -1.02 | -0.347 | -- | 21.7 | 796 | -- | -- |
| 81.05 | 0.422 | 8.05 | 0.105 | 0.387 | -- | 0.188 | -- | -0.492 | 5.6 | -- | -- | -- | -- |
| 81.12 | 0.422 | 8.05 | 0.105 | 0.388 | -- | -- | -- | -0.492 | 5.45 | -- | -- | -- | -- |
| 69.45 | 0.388 | 8.01 | 0.335 | -- | -0.636 | -- | -- | -0.276 | -- | 22.2 | 701 | -- | -- |
| 64.97 | 0.375 | 8.01 | -- | 0.384 | -0.604 | -- | -- | -0.327 | 4.26 | 22.1 | 853 | -- | -- |
| 88.97 | 0.441 | 8.05 | 0.118 | -- | -- | -- | -- | -0.483 | -- | -- | -- | -- | -- |
| 81.42 | 0.422 | 8.05 | -- | 0.39 | -- | -- | -- | -0.504 | 5.44 | -- | -- | -- | -- |
| 72.17 | 0.396 | 8.02 | -- | -- | -0.59 | -- | -- | -0.324 | -- | 22.13 | 701 | -- | -- |
| 89.34 | 0.441 | 8.06 | -- | -- | -- | -- | -- | -0.496 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.23 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 20 |
| 2 | 59.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 11 |
| 3 | 59.34 | temperature | 15 | 270 | > th | dose dependent | sin | 6 | NA |
| 5 | 59.37 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 12 | 59.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 13 |
| 39 | 60.45 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 43 | 60.50 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 18 |
| 48 | 60.64 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 16 |
| 89 | 61.65 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 169 | 62.20 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 170 | 62.21 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 176 | 62.23 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 185 | 62.26 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 200 | 62.33 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 11 |
| 227 | 62.44 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 232 | 62.46 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 259 | 62.64 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 271 | 62.71 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 280 | 62.75 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 335 | 62.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 337 | 62.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 371 | 63.13 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 375 | 63.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 382 | 63.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 387 | 63.19 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 445 | 63.37 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 471 | 63.45 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 488 | 63.48 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 532 | 63.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 540 | 63.60 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 547 | 63.62 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 568 | 63.67 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 18 |
| 641 | 63.83 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 650 | 63.85 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 672 | 63.89 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 22 |
| 708 | 63.95 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 721 | 63.98 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 7 |
| 756 | 64.04 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 11 |
| 811 | 64.13 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 817 | 64.13 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 822 | 64.14 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 19 |
| 828 | 64.14 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 20 |
| 884 | 64.23 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 19 |
| 908 | 64.26 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |