Os07g0191200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plasma membrane H+ ATPase (EC 3.6.3.6).
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Os07g0191200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plasma membrane H+ ATPase (EC 3.6.3.6).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 112 | 0.497 | 12.5 | -0.0228 | 0.58 | -0.974 | 1.93 | -0.0751 | -0.0736 | 4.47 | 19.38 | 845 | -- | -- |
| 112.01 | 0.493 | 12.5 | -0.0183 | 0.582 | -0.96 | 1.9 | -- | -0.0738 | 4.5 | 19.33 | 844 | -- | -- |
| 121.05 | 0.512 | 12.5 | -0.00832 | 0.629 | -0.809 | -- | 0.359 | -0.0951 | 5.03 | 19.2 | 862 | -- | -- |
| 120.23 | 0.511 | 12.5 | -0.073 | 0.629 | -0.811 | -- | -- | -0.0766 | 5.35 | 20.2 | 892 | -- | -- |
| 139.48 | 0.55 | 12.5 | -0.0884 | -- | -0.834 | -- | -0.0871 | -0.057 | -- | 20.11 | 707 | -- | -- |
| 130.12 | 0.535 | 12.5 | -0.371 | 0.593 | -- | 1.82 | -- | -0.236 | 4.92 | -- | -- | -- | -- |
| 136.35 | 0.547 | 12.5 | -0.372 | 0.645 | -- | -- | -- | -0.244 | 6.08 | -- | -- | -- | -- |
| 139.49 | 0.55 | 12.5 | -0.0573 | -- | -0.817 | -- | -- | -0.0629 | -- | 20.15 | 712 | -- | -- |
| 120.31 | 0.511 | 12.5 | -- | 0.625 | -0.824 | -- | -- | -0.0691 | 5.39 | 20.1 | 892 | -- | -- |
| 157.91 | 0.587 | 12.5 | -0.353 | -- | -- | -- | -- | -0.229 | -- | -- | -- | -- | -- |
| 139.99 | 0.553 | 12.5 | -- | 0.639 | -- | -- | -- | -0.202 | 6.11 | -- | -- | -- | -- |
| 139.29 | 0.55 | 12.5 | -- | -- | -0.784 | -- | -- | -0.0381 | -- | 20.8 | 707 | -- | -- |
| 161.2 | 0.593 | 12.5 | -- | -- | -- | -- | -- | -0.19 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.45 | temperature | 20 | 720 | < th | dose independent | rect. | 2 | 5 |
| 6 | 100.82 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 13 | 101.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 13 |
| 30 | 101.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 33 | 101.63 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 73 | 102.67 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 12 |
| 74 | 102.71 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 11 |
| 105 | 103.30 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 13 |
| 106 | 103.30 | temperature | 30 | 90 | < th | dose dependent | sin | 3 | NA |
| 124 | 103.59 | temperature | 30 | 10 | < th | dose dependent | sin | 2 | NA |
| 125 | 103.60 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 10 |
| 147 | 103.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 12 |
| 156 | 104.01 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 278 | 105.58 | temperature | 25 | 720 | < th | dose dependent | sin | 6 | NA |
| 385 | 106.74 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 8 |
| 392 | 106.83 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 416 | 107.02 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 11 |
| 464 | 107.32 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 6 |
| 465 | 107.33 | wind | 1 | 270 | > th | dose independent | rect. | 13 | 17 |
| 495 | 107.60 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 16 |
| 520 | 107.79 | temperature | 20 | 720 | > th | dose independent | sin | 3 | NA |
| 551 | 108.04 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 12 |
| 553 | 108.07 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 14 |
| 598 | 108.41 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 7 |
| 662 | 108.77 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 5 |
| 738 | 109.26 | wind | 1 | 270 | > th | dose independent | rect. | 11 | 20 |
| 742 | 109.30 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 24 | 8 |
| 784 | 109.55 | temperature | 20 | 720 | > th | dose independent | sin | 5 | NA |
| 818 | 109.75 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 24 | 7 |
| 819 | 109.75 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 24 | 8 |
| 875 | 110.00 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 2 |
| 938 | 110.33 | wind | 1 | 270 | > th | dose independent | rect. | 24 | 7 |