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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0689300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plasma membrane H+ ATPase (EC 3.6.3.6) (H-ATPase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.84 (0.0311) R2 : 0.545
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.54 (0.0797) R2dC : 0.375 R2C : 0.357
β3 : -1.06 (0.108) R2dE : 0.105 R2E : 0.138
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.39 (0.0676) R2dN8 : 0.047 R2N8 : 0.0661
σ : 0.577
deviance : 153.55
__
_____
C
peak time of C : 7.27
E
wheather : temperature
threshold : 20.6
memory length : 1229
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
150.04 0.576 7.82 0.431 1.55 -1.22 -0.13 0.119 -0.311 7.32 20.5 1311 -- --
150.05 0.571 7.83 0.4 1.54 -1.22 -0.108 -- -0.316 7.3 20.51 1276 -- --
150.05 0.571 7.82 0.428 1.54 -1.21 -- 0.14 -0.311 7.3 20.5 1273 -- --
150.09 0.571 7.83 0.4 1.54 -1.22 -- -- -0.317 7.29 20.5 1273 -- --
258.02 0.748 7.83 0.538 -- -1.31 -- 0.459 -0.228 -- 20.54 651 -- --
185.17 0.638 7.89 -0.105 1.54 -- 0.0206 -- -0.596 7.49 -- -- -- --
185.17 0.637 7.89 -0.104 1.54 -- -- -- -0.596 7.49 -- -- -- --
258.17 0.748 7.86 0.374 -- -1.32 -- -- -0.293 -- 20.6 647 -- --
153.55 0.577 7.84 -- 1.54 -1.06 -- -- -0.39 7.27 20.6 1229 -- --
312.11 0.826 7.93 -0.0807 -- -- -- -- -0.572 -- -- -- -- --
185.45 0.637 7.89 -- 1.54 -- -- -- -0.585 7.5 -- -- -- --
240.26 0.722 7.87 -- -- -1.05 -- -- -0.294 -- 25.8 426 -- --
312.28 0.825 7.92 -- -- -- -- -- -0.563 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 145.34 precipitation 0.1 14400 > th dose independent rect. 7 1
2 145.34 precipitation 0.1 14400 > th dose dependent rect. 7 1
3 145.79 precipitation 0.1 14400 < th dose independent rect. 7 1
4 145.79 precipitation 0.1 14400 < th dose dependent rect. 7 1
5 146.11 wind 1.0 43200 > th dose dependent rect. 1 1
6 146.61 wind 3.0 43200 < th dose dependent rect. 5 1
7 147.02 wind 9.0 43200 < th dose dependent rect. 1 1
10 148.16 humidity 80.0 14400 > th dose dependent rect. 13 1
11 148.28 wind 3.0 43200 < th dose dependent rect. 4 3
13 148.72 wind 1.0 43200 > th dose dependent rect. 5 1
20 150.12 wind 1.0 14400 > th dose independent rect. 3 4
22 150.30 humidity 80.0 14400 > th dose independent rect. 13 1
23 150.34 humidity 80.0 14400 > th dose dependent rect. 12 3
25 150.67 precipitation 0.1 14400 > th dose independent rect. 14 2
27 150.67 precipitation 0.1 14400 > th dose dependent rect. 14 2
28 150.82 wind 1.0 43200 > th dose independent rect. 22 8
29 150.84 precipitation 0.1 14400 < th dose independent rect. 14 2
30 150.84 precipitation 0.1 14400 < th dose dependent rect. 14 2
33 150.98 wind 3.0 43200 < th dose dependent rect. 22 9
36 151.10 wind 9.0 14400 < th dose independent rect. 8 3
41 151.18 temperature 20.0 1440 > th dose independent rect. 21 14
43 151.21 temperature 20.0 1440 < th dose independent rect. 21 13
47 151.27 temperature 20.0 1440 > th dose independent sin 8 NA
53 151.30 wind 1.0 14400 < th dose independent rect. 3 4
54 151.33 radiation 20.0 1440 < th dose dependent rect. 11 1
56 151.35 temperature 20.0 1440 < th dose independent sin 8 NA
66 151.42 wind 3.0 43200 < th dose independent rect. 5 1
69 151.44 temperature 20.0 1440 < th dose independent rect. 21 10
76 151.48 temperature 20.0 1440 > th dose independent rect. 19 12
83 151.52 temperature 20.0 1440 > th dose independent rect. 21 10
84 151.53 temperature 20.0 1440 < th dose independent rect. 19 11
120 151.68 precipitation 0.1 14400 > th dose independent rect. 4 12
123 151.68 precipitation 0.1 43200 > th dose dependent rect. 18 2
130 151.71 wind 3.0 14400 < th dose dependent rect. 1 6
136 151.73 precipitation 0.1 14400 < th dose independent rect. 4 12
138 151.73 precipitation 0.1 14400 < th dose dependent rect. 4 12
159 151.81 temperature 20.0 1440 > th dose independent rect. 1 9
193 151.92 temperature 20.0 1440 < th dose independent rect. 1 9
205 151.98 wind 9.0 14400 > th dose independent rect. 9 2
213 152.00 temperature 20.0 1440 < th dose independent rect. 5 1
224 152.03 temperature 20.0 1440 > th dose independent rect. 5 2
228 152.03 precipitation 0.1 14400 > th dose dependent rect. 4 6
265 152.18 precipitation 0.1 4320 > th dose independent rect. 1 16
268 152.19 temperature 20.0 1440 > th dose independent rect. 3 4
269 152.19 temperature 20.0 1440 < th dose independent rect. 3 4
277 152.20 wind 1.0 43200 < th dose independent rect. 22 9
293 152.24 humidity 80.0 14400 < th dose independent rect. 13 1
303 152.28 precipitation 0.1 4320 < th dose independent rect. 1 16
306 152.28 precipitation 0.1 4320 < th dose dependent rect. 1 16
362 152.43 precipitation 0.1 14400 > th dose independent rect. 4 6
380 152.47 precipitation 0.1 4320 > th dose dependent rect. 1 15
403 152.56 radiation 20.0 1440 < th dose independent rect. 11 2
419 152.61 precipitation 0.1 14400 < th dose independent rect. 4 6
422 152.61 precipitation 0.1 14400 < th dose dependent rect. 4 6
457 152.71 wind 3.0 43200 > th dose independent rect. 5 1
475 152.74 wind 1.0 14400 > th dose dependent rect. 23 8
527 152.90 wind 1.0 43200 < th dose independent rect. 20 11
536 152.92 precipitation 0.1 14400 > th dose independent rect. 7 9
545 152.95 temperature 20.0 1440 > th dose independent no NA NA
568 153.01 precipitation 0.1 14400 > th dose dependent rect. 4 12
576 153.05 temperature 20.0 1440 > th dose independent rect. 3 1
588 153.08 precipitation 0.1 14400 < th dose independent rect. 7 9
591 153.08 precipitation 0.1 14400 < th dose dependent rect. 7 9
592 153.09 temperature 20.0 1440 > th dose independent rect. 1 23
594 153.10 humidity 90.0 14400 > th dose dependent rect. 8 2
606 153.12 precipitation 0.1 4320 > th dose dependent rect. 1 12
611 153.14 temperature 20.0 1440 < th dose independent no NA NA
635 153.24 temperature 20.0 1440 < th dose independent rect. 21 4
644 153.28 precipitation 0.1 270 > th dose independent rect. 2 2
647 153.28 wind 3.0 14400 < th dose dependent rect. 23 3
648 153.28 precipitation 0.1 4320 > th dose dependent rect. 1 10
649 153.29 wind 1.0 1440 > th dose independent rect. 23 1
653 153.29 temperature 20.0 1440 < th dose independent rect. 1 23
674 153.35 humidity 80.0 14400 > th dose independent rect. 10 1
696 153.42 humidity 80.0 14400 > th dose independent rect. 10 5
707 153.46 temperature 20.0 1440 < th dose independent rect. 3 1
721 153.48 humidity 80.0 14400 > th dose dependent rect. 9 6
735 153.52 radiation 10.0 43200 > th dose independent rect. 13 1
784 153.65 precipitation 0.1 14400 > th dose independent rect. 4 4
810 153.71 precipitation 0.1 270 > th dose dependent rect. 2 2
826 153.76 wind 3.0 43200 < th dose independent rect. 1 1
842 153.81 wind 3.0 43200 > th dose independent rect. 1 1
846 153.83 precipitation 0.1 14400 < th dose independent rect. 4 4
852 153.83 precipitation 0.1 14400 < th dose dependent rect. 4 4
862 153.88 precipitation 0.1 14400 > th dose dependent rect. 3 10