BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0775200 Os02g0775200|AK069984
(361 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0775200 Similar to Activator 1 36 kDa subunit (Replica... 692 0.0
Os12g0176500 Similar to Replication factor C subunit RFC4 213 3e-55
Os04g0569000 Similar to Activator 1 40 kDa subunit (Replica... 205 5e-53
Os03g0792600 AAA ATPase domain containing protein 119 3e-27
Os08g0120200 DNA polymerase III, delta family protein 74 1e-13
Os11g0572100 Similar to DNA ligase (EC 6.5.1.2) 67 2e-11
Os12g0209300 AAA ATPase, central region domain containing p... 65 8e-11
>Os02g0775200 Similar to Activator 1 36 kDa subunit (Replication factor C 36 kDa
subunit) (A1 36 kDa subunit) (RF-C 36 kDa subunit)
(RFC36) (Replication factor C subunit 5)
Length = 361
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/333 (100%), Positives = 333/333 (100%)
Query: 29 LSSTPGGRAAPWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTI 88
LSSTPGGRAAPWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTI
Sbjct: 29 LSSTPGGRAAPWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTI 88
Query: 89 LAVARKLYGSQYGNMILELNASDERGIDVVRQQIQDFASARSLSFGAKQSVKMVLLDEAD 148
LAVARKLYGSQYGNMILELNASDERGIDVVRQQIQDFASARSLSFGAKQSVKMVLLDEAD
Sbjct: 89 LAVARKLYGSQYGNMILELNASDERGIDVVRQQIQDFASARSLSFGAKQSVKMVLLDEAD 148
Query: 149 AMTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRERLKH 208
AMTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRERLKH
Sbjct: 149 AMTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRERLKH 208
Query: 209 IIQSEGLDVDDGGLTALVRLSNGDMRKALNILQSTHMASKQITEEAVYLCTGNPMPKDIE 268
IIQSEGLDVDDGGLTALVRLSNGDMRKALNILQSTHMASKQITEEAVYLCTGNPMPKDIE
Sbjct: 209 IIQSEGLDVDDGGLTALVRLSNGDMRKALNILQSTHMASKQITEEAVYLCTGNPMPKDIE 268
Query: 269 QIAYWLLNESFSTSFKCISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRIKLINDLADI 328
QIAYWLLNESFSTSFKCISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRIKLINDLADI
Sbjct: 269 QIAYWLLNESFSTSFKCISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRIKLINDLADI 328
Query: 329 EYRLSFACNDKLQLGALISTFTGARTAMVAAAH 361
EYRLSFACNDKLQLGALISTFTGARTAMVAAAH
Sbjct: 329 EYRLSFACNDKLQLGALISTFTGARTAMVAAAH 361
>Os12g0176500 Similar to Replication factor C subunit RFC4
Length = 339
Score = 213 bits (541), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 142/210 (67%), Gaps = 7/210 (3%)
Query: 39 PWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGS 98
PWVEKYRP+ + DVA ++V + LPH+L YGPPGTGKT+T LA+A +LYG
Sbjct: 10 PWVEKYRPRQVKDVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGP 69
Query: 99 Q-YGNMILELNASDERGIDVVRQQIQDFA-----SARSLSFGAKQSVKMVLLDEADAMTK 152
+ Y + +LELNASD+RGI+VVR +I+DFA SAR + K+++LDEAD+MT+
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSARKGGYPCP-PYKIIILDEADSMTE 128
Query: 153 DAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRERLKHIIQS 212
DAQ ALRR +E +++ TRF ICN++++II L SRC +FRF PL + R+ HI
Sbjct: 129 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 188
Query: 213 EGLDVDDGGLTALVRLSNGDMRKALNILQS 242
EGL +D L L +SNGD+R+A+ LQS
Sbjct: 189 EGLSLDAQALATLSTISNGDLRRAITYLQS 218
>Os04g0569000 Similar to Activator 1 40 kDa subunit (Replication factor C 40 kDa
subunit) (A1 40 kDa subunit) (RF-C 40 kDa subunit)
(RFC40)
Length = 335
Score = 205 bits (521), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 117/319 (36%), Positives = 183/319 (57%), Gaps = 11/319 (3%)
Query: 39 PWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGS 98
PWVEKYRP + DV + D V + + + +P+L+L GPPGTGKT++IL++A +L G
Sbjct: 18 PWVEKYRPTRVADVGGNSDAVARLQDIARDGNMPNLILSGPPGTGKTTSILSLAHELLGP 77
Query: 99 QYGNMILELNASDERGIDVVRQQIQDFASAR-SLSFGAKQSVKMVLLDEADAMTKDAQFA 157
Y +LELNASD+RG+DVVR +I+ FA + +L G K+V+LDEAD+MT AQ A
Sbjct: 78 SYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRH---KIVILDEADSMTSGAQQA 134
Query: 158 LRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRERLKHIIQSEGLDV 217
LRR +E ++ +TRFAL CN +KII +QSRC RF+ L + RL ++ +E +
Sbjct: 135 LRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAEKVPY 194
Query: 218 DDGGLTALVRLSNGDMRKALNILQSTHMASKQITEEAVYLCTGNPMPKDIEQIAYWLLNE 277
GL A++ ++GDMR+ALN LQ+T + + +E V+ P P ++ + +L+
Sbjct: 195 VPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPHPLHVKNMVKNVLDG 254
Query: 278 SFS---TSFKCISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRIKLINDLADIEYRLSF 334
F ++ K + D+ G + DII + + M ++++L+ + R+
Sbjct: 255 KFDEACSALKQLYDL----GYSPTDIITTLFRVIKNYDMAEYLKLELLKETGFAHMRICD 310
Query: 335 ACNDKLQLGALISTFTGAR 353
LQL L++ F R
Sbjct: 311 GVGSFLQLSGLLAKFALVR 329
>Os03g0792600 AAA ATPase domain containing protein
Length = 354
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 122/245 (49%), Gaps = 29/245 (11%)
Query: 40 WVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGSQ 99
WV+KYRP++L V H + + +L E PHLL YGP G+GK + ++A+ ++++G+
Sbjct: 3 WVDKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFGAG 62
Query: 100 YGNMIL---------------------------ELNASDERGID--VVRQQIQDFASARS 130
+ + E+N SD D VV++ I++ A R
Sbjct: 63 ADKVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKNRP 122
Query: 131 LSFGAKQSVKMVLLDEADAMTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCT 190
+ K++ K+++L+E D ++++AQ +LRR +EK++ S R L CN +K+ A++SRC
Sbjct: 123 IDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRCL 182
Query: 191 RFRFAPLDGTHVRERLKHIIQSEGLDVDDGGLTALVRLSNGDMRKALNILQSTHMASKQI 250
R + + L+ I + E L + G + SN ++R+A+ ++ +
Sbjct: 183 NVRVNAPSEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQYPF 242
Query: 251 TEEAV 255
T V
Sbjct: 243 TSNQV 247
>Os08g0120200 DNA polymerase III, delta family protein
Length = 799
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 108/237 (45%), Gaps = 17/237 (7%)
Query: 41 VEKYRPQSLGDVAAHRDIVDTIDRLTNENRL-PHLLLYGPPGTGKTST--ILAVARKLYG 97
++KYRP++ ++A + ++ + +L P L +GP G GKTS I A + +
Sbjct: 152 LQKYRPKAFSELAGQNVVAQSLSSAVLKGKLAPIYLFHGPHGIGKTSAARIFAASLNCHS 211
Query: 98 SQYGNM----------ILELNASDERGIDVVRQQIQDFASA---RSLSFGAKQSVKMVLL 144
S GN I N+S ID + + +A + A K++++
Sbjct: 212 SG-GNQPCGHCEECMAIFSGNSSSVIEIDASKLDCKSRVAALLRNACEVPASSHFKVLIV 270
Query: 145 DEADAMTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRE 204
D+ M K+ +++ +E S+ F +I + ++K+ C +RF +D +
Sbjct: 271 DDCQHMDKEGWYSVYSSLEGIPDSSIFVMITSDIDKLPSNSVGWCQSYRFCKVDEAEIAL 330
Query: 205 RLKHIIQSEGLDVDDGGLTALVRLSNGDMRKALNILQSTHMASKQITEEAVYLCTGN 261
RL I +EG++ + L + R +NG +R A+ +L + K+I++ Y G+
Sbjct: 331 RLSRICINEGMEFEAEALELIARKANGSIRDAVQMLDQLTLLGKRISKSVTYDLIGD 387
>Os11g0572100 Similar to DNA ligase (EC 6.5.1.2)
Length = 1021
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 42/238 (17%)
Query: 40 WVEKYRPQSLGDVAAHRDIVDTI-DRLTN-ENRLPH------------------LLLYGP 79
W EKYRP+ D+ ++ +V + D L + E++ H +LL GP
Sbjct: 408 WTEKYRPKVPNDIVGNQSMVKQLHDWLRSWEDQFLHSGQKGKGKKQADSGAKKAVLLSGP 467
Query: 80 PGTGKTSTILAVARKLYGSQYGNMILELNASDERGI----------DVVRQQIQDFASAR 129
PG GKT+T V++ L G +E+NASD RG I++ S
Sbjct: 468 PGIGKTTTAKVVSQML-----GLQAIEVNASDSRGKADSKIEKGVGGSTSNSIKELISNA 522
Query: 130 SLSFGA---KQSVKMVLLDEADAMTKDAQFALRRVIEKHTRSTRFALIC---NHVNKIIP 183
+L++ K+ ++++DE D M+ + + +I + ++ +IC + ++ +
Sbjct: 523 TLNYSNNRLKRPKAVLVMDEVDGMSAGDRGGVADLIA-SIKMSKIPIICICNDRYSQKLK 581
Query: 184 ALQSRCTRFRFAPLDGTHVRERLKHIIQSEGLDVDDGGLTALVRLSNGDMRKALNILQ 241
+L + C F + +RL I + EGL + + L +GD+R ALN LQ
Sbjct: 582 SLVNYCLLLNFRKPTKQQMGKRLMEIAKKEGLQAQENAMEELAERVHGDIRMALNHLQ 639
>Os12g0209300 AAA ATPase, central region domain containing protein
Length = 1174
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 103/234 (44%), Gaps = 25/234 (10%)
Query: 42 EKYRPQSLGDVAAHRDIVDTI-DRLTNENRLPHLLLYGPPGTGKTSTILAVARKL----- 95
+KYRP+ ++ + ++ + +T E P L GP GTGKTST + L
Sbjct: 404 QKYRPKLFSEIVGQHIVAQSLSNAITREKIAPAYLFQGPRGTGKTSTARIFSMGLSCLAP 463
Query: 96 --------------YGSQYGNMILELNASDERGIDVVRQQIQDFASARSLSFGAKQSVKM 141
+ S G ++E++AS+ + I+ ++ +++ + + S K+
Sbjct: 464 GENKPCGICKECTDFLSGNGTNLIEVDASNRKSINRIKNLLENIPPSATSS-----RYKL 518
Query: 142 VLLDEADAMTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTH 201
++DE ++ A + +++ F I + + A+ SRC ++ F+ +
Sbjct: 519 FVVDECHMVSSKLWSAFMKFLDEPLPRVVFVFITIDPDNLPRAVISRCQKYVFSKIKDID 578
Query: 202 VRERLKHIIQSEGLDVDDGGLTALVRLSNGDMRKALNILQSTHMASKQITEEAV 255
+ RL+ I E LDV+ L + S+G +R A +L + K+IT V
Sbjct: 579 IVCRLRRICVKENLDVELAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLV 632
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.135 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,492,318
Number of extensions: 403424
Number of successful extensions: 1140
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1134
Number of HSP's successfully gapped: 7
Length of query: 361
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 259
Effective length of database: 11,709,973
Effective search space: 3032883007
Effective search space used: 3032883007
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)