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Os11g0572100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to DNA ligase (EC 6.5.1.2).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0146) R2 : 0.0026
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0335 (0.0307) R2dN8 : 0.00336 R2N8 : 0.0026
σ : 0.274
deviance : 34.57
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
13.58 0.173 11.7 0.554 0.517 0.492 -0.301 -0.245 0.14 17 19.87 642 -- --
13.61 0.172 11.7 0.549 0.518 0.593 -0.313 -- 0.139 17 19.64 605 -- --
13.79 0.173 11.7 0.563 0.512 0.443 -- -0.35 0.142 17.1 19.88 800 -- --
13.84 0.173 11.7 0.544 0.516 0.587 -- -- 0.137 17.1 19.68 636 -- --
26.68 0.241 11.7 0.64 -- 0.439 -- -0.45 0.178 -- 40.35 1220 -- --
15.86 0.187 11.7 0.434 0.515 -- -0.313 -- 0.0943 16.7 -- -- -- --
16.11 0.188 11.7 0.433 0.514 -- -- -- 0.0926 16.8 -- -- -- --
26.77 0.241 11.7 0.547 -- 0.767 -- -- 0.128 -- 18.92 1068 -- --
20.59 0.211 11.7 -- 0.556 0.19 -- -- 0.0676 16.9 39.34 409 -- --
30.06 0.256 11.7 0.413 -- -- -- -- 0.0793 -- -- -- -- --
21.04 0.215 11.7 -- 0.506 -- -- -- 0.0445 16.8 -- -- -- --
33.05 0.268 11.7 -- -- -0.198 -- -- -0.0259 -- 37.42 47520 -- --
34.57 0.274 11.7 -- -- -- -- -- 0.0335 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 11.66 atmosphere 995.0 90 > th dose dependent rect. 7 20
2 11.69 atmosphere 995.0 10 > th dose dependent rect. 7 21
27 12.43 temperature 10.0 270 > th dose dependent rect. 10 21
40 12.54 temperature 30.0 90 < th dose dependent rect. 7 20
41 12.57 temperature 15.0 270 > th dose independent rect. 10 21
50 12.65 temperature 15.0 30 > th dose independent rect. 12 19
55 12.67 temperature 10.0 10 > th dose dependent rect. 12 19
60 12.69 temperature 15.0 270 > th dose independent rect. 11 19
61 12.69 temperature 10.0 90 > th dose dependent rect. 3 14
64 12.70 temperature 10.0 270 > th dose dependent rect. 1 15
68 12.72 wind 5.0 90 < th dose independent rect. 17 10
69 12.72 atmosphere 1000.0 90 > th dose independent rect. 7 20
73 12.73 temperature 30.0 270 < th dose dependent rect. 5 20
85 12.76 atmosphere 995.0 30 > th dose dependent rect. 7 5
88 12.77 atmosphere 995.0 10 > th dose dependent rect. 7 9
94 12.78 temperature 15.0 270 > th dose independent rect. 12 17
103 12.80 temperature 30.0 270 < th dose dependent rect. 7 2
105 12.80 atmosphere 995.0 90 > th dose dependent rect. 17 10
111 12.82 temperature 30.0 90 < th dose independent rect. 7 8
122 12.84 temperature 30.0 90 < th dose independent rect. 7 20
127 12.85 temperature 30.0 270 < th dose independent rect. 5 8
135 12.87 temperature 15.0 90 > th dose independent rect. 15 16
149 12.89 temperature 30.0 270 < th dose dependent rect. 6 5
152 12.90 wind 7.0 270 < th dose independent rect. 15 10
153 12.90 atmosphere 1010.0 270 < th dose independent rect. 10 20
155 12.91 wind 5.0 90 < th dose independent rect. 3 4
174 12.93 atmosphere 995.0 270 > th dose dependent rect. 7 3
195 12.97 wind 9.0 90 < th dose independent rect. 7 20
201 12.98 precipitation 0.1 90 < th dose independent rect. 3 4
203 12.98 precipitation 0.1 90 < th dose dependent rect. 3 4
211 12.99 atmosphere 1000.0 30 > th dose independent rect. 7 5
213 12.99 temperature 30.0 10 < th dose independent rect. 7 21
215 12.99 temperature 10.0 90 > th dose dependent rect. 3 4
216 12.99 atmosphere 995.0 10 > th dose dependent rect. 18 10
217 12.99 radiation 40.0 4320 < th dose dependent rect. 18 10
218 12.99 temperature 10.0 720 > th dose dependent rect. 19 19
219 12.99 temperature 10.0 270 > th dose dependent rect. 24 22
221 13.00 temperature 10.0 90 > th dose independent rect. 3 4
223 13.00 temperature 30.0 90 < th dose independent rect. 3 4
224 13.00 humidity 50.0 90 > th dose independent rect. 3 4
227 13.00 atmosphere 995.0 90 > th dose independent rect. 3 4
228 13.00 atmosphere 1015.0 90 < th dose independent rect. 3 4
229 13.00 radiation 20.0 90 < th dose independent rect. 3 4
232 13.00 temperature 10.0 90 > th dose independent rect. 7 20
243 13.01 temperature 15.0 270 > th dose independent rect. 10 11
253 13.02 wind 5.0 90 < th dose independent rect. 7 20
255 13.02 wind 9.0 90 < th dose dependent rect. 3 4
256 13.02 temperature 30.0 270 < th dose dependent rect. 6 7
258 13.02 temperature 10.0 720 > th dose dependent rect. 19 12
263 13.02 atmosphere 1015.0 90 < th dose dependent rect. 11 20
286 13.05 temperature 15.0 720 > th dose independent rect. 19 10
292 13.06 temperature 15.0 90 > th dose independent rect. 3 14
302 13.06 atmosphere 1015.0 10 < th dose dependent rect. 12 19
306 13.07 temperature 30.0 270 < th dose independent rect. 5 20
315 13.08 radiation 40.0 90 < th dose dependent rect. 3 4
323 13.08 humidity 50.0 90 > th dose dependent rect. 7 20
329 13.09 wind 9.0 90 < th dose dependent rect. 17 10
369 13.14 radiation 40.0 270 < th dose independent rect. 6 19
371 13.14 temperature 10.0 270 > th dose dependent rect. 3 2
400 13.16 atmosphere 1000.0 90 > th dose independent rect. 7 8
403 13.16 precipitation 0.1 90 < th dose independent rect. 7 20
404 13.16 wind 7.0 270 < th dose independent rect. 5 21
416 13.16 precipitation 0.1 90 < th dose dependent rect. 7 20
420 13.17 radiation 10.0 10 < th dose independent rect. 4 3
424 13.17 temperature 15.0 720 > th dose independent rect. 17 14
431 13.17 temperature 10.0 270 > th dose dependent rect. 1 5
441 13.18 humidity 50.0 90 > th dose dependent rect. 3 4
444 13.18 temperature 10.0 270 > th dose dependent rect. 10 11
448 13.18 wind 9.0 90 < th dose dependent rect. 7 20
453 13.19 atmosphere 1010.0 270 < th dose independent rect. 10 11
455 13.19 humidity 50.0 90 > th dose independent rect. 7 20
471 13.20 atmosphere 1000.0 270 > th dose independent rect. 5 20
474 13.20 atmosphere 995.0 90 > th dose dependent rect. 7 12
481 13.21 atmosphere 1000.0 270 > th dose independent rect. 5 7
487 13.21 atmosphere 995.0 90 > th dose dependent rect. 3 4
503 13.22 radiation 10.0 90 < th dose independent rect. 17 10
512 13.22 radiation 20.0 90 < th dose dependent rect. 17 10
532 13.23 humidity 50.0 90 > th dose dependent rect. 17 10
538 13.23 temperature 10.0 90 > th dose dependent rect. 3 19
542 13.24 temperature 30.0 270 < th dose independent rect. 7 3
565 13.25 humidity 80.0 14400 > th dose independent rect. 18 2
570 13.25 wind 9.0 10 < th dose independent rect. 7 21
573 13.25 radiation 1.0 270 < th dose dependent rect. 2 3
584 13.26 atmosphere 1000.0 270 > th dose independent rect. 7 2
588 13.26 radiation 1.0 30 > th dose independent rect. 7 5
589 13.26 radiation 10.0 270 < th dose independent rect. 1 5
590 13.26 humidity 50.0 90 > th dose independent rect. 17 10
594 13.26 precipitation 0.1 30 < th dose independent rect. 12 19
606 13.26 radiation 10.0 90 < th dose dependent rect. 15 12
609 13.26 precipitation 0.1 30 < th dose dependent rect. 12 19
612 13.27 temperature 10.0 10 > th dose independent rect. 4 3
614 13.27 temperature 30.0 10 < th dose independent rect. 4 3
615 13.27 humidity 50.0 10 > th dose independent rect. 4 3
618 13.27 atmosphere 995.0 10 > th dose independent rect. 4 3
619 13.27 atmosphere 1015.0 10 < th dose independent rect. 4 3
625 13.27 temperature 10.0 1440 > th dose independent rect. 8 5
628 13.27 atmosphere 995.0 1440 > th dose independent rect. 8 5
630 13.27 temperature 15.0 270 > th dose independent rect. 1 14
631 13.27 temperature 10.0 1440 > th dose independent rect. 13 19
636 13.27 temperature 10.0 10 > th dose independent rect. 7 21
651 13.28 wind 1.0 270 > th dose independent rect. 2 3
680 13.28 wind 9.0 1440 < th dose independent rect. 4 4
683 13.28 temperature 10.0 1440 > th dose independent rect. 4 4
687 13.28 temperature 30.0 1440 < th dose independent rect. 4 4
694 13.28 humidity 50.0 1440 > th dose independent rect. 4 4
700 13.28 atmosphere 995.0 1440 > th dose independent rect. 4 4
703 13.28 atmosphere 1015.0 1440 < th dose independent rect. 4 4
708 13.28 precipitation 0.1 30 < th dose independent rect. 7 5
715 13.28 temperature 10.0 1440 > th dose independent rect. 8 20
719 13.28 temperature 10.0 270 > th dose independent rect. 5 21
730 13.28 precipitation 0.1 30 < th dose dependent rect. 7 5
742 13.29 temperature 10.0 30 > th dose independent rect. 7 5
745 13.29 atmosphere 1015.0 30 < th dose independent rect. 7 5
755 13.29 atmosphere 1000.0 10 > th dose dependent rect. 4 3
761 13.29 temperature 10.0 10 > th dose dependent rect. 15 16
774 13.30 precipitation 0.1 90 < th dose independent rect. 3 14
775 13.30 radiation 40.0 90 < th dose independent rect. 13 18
782 13.30 radiation 40.0 10 < th dose dependent rect. 4 3
790 13.30 precipitation 0.1 90 < th dose dependent rect. 3 14
798 13.30 radiation 40.0 90 < th dose dependent rect. 7 20
801 13.31 atmosphere 1010.0 270 < th dose independent rect. 1 5
809 13.31 radiation 10.0 270 < th dose dependent rect. 1 5
813 13.31 temperature 30.0 270 < th dose dependent rect. 20 16
820 13.32 wind 1.0 270 > th dose independent rect. 3 1
823 13.32 wind 9.0 43200 < th dose independent rect. 20 3
830 13.32 temperature 15.0 720 > th dose independent rect. 19 19
865 13.33 wind 7.0 270 < th dose independent rect. 1 5
870 13.33 precipitation 0.1 270 < th dose independent rect. 1 5
882 13.33 precipitation 0.1 270 < th dose independent rect. 9 22
890 13.33 precipitation 0.1 270 < th dose dependent rect. 1 5
894 13.33 humidity 80.0 14400 > th dose dependent rect. 19 14
905 13.33 precipitation 0.1 270 < th dose dependent rect. 9 22
907 13.34 wind 9.0 43200 > th dose independent rect. 20 3
924 13.34 humidity 80.0 14400 > th dose independent rect. 17 5
931 13.34 temperature 15.0 720 > th dose independent rect. 17 22
937 13.34 humidity 70.0 14400 > th dose dependent rect. 18 11
954 13.35 humidity 80.0 14400 < th dose independent rect. 18 2
964 13.35 wind 1.0 90 > th dose independent rect. 7 20
967 13.35 wind 7.0 43200 > th dose dependent rect. 20 4
984 13.36 wind 1.0 30 > th dose independent rect. 7 5
986 13.36 temperature 10.0 270 > th dose independent rect. 1 5
988 13.36 temperature 30.0 270 < th dose independent rect. 1 5
989 13.36 humidity 50.0 270 > th dose independent rect. 1 5
992 13.36 atmosphere 995.0 270 > th dose independent rect. 1 5