Os08g0120200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA polymerase III, delta family protein.
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Os08g0120200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA polymerase III, delta family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.5 | 0.292 | 8.62 | 0.274 | 0.803 | -0.273 | 0.367 | 1.02 | 0.192 | 21.2 | 20.33 | 336 | -- | -- |
| 41.33 | 0.299 | 8.62 | 0.2 | 0.835 | -0.456 | 0.116 | -- | 0.177 | 20.9 | 19.3 | 508 | -- | -- |
| 38.45 | 0.289 | 8.61 | 0.312 | 0.832 | -0.273 | -- | 1.11 | 0.207 | 21.2 | 20.8 | 388 | -- | -- |
| 40.55 | 0.297 | 8.63 | 0.165 | 0.859 | -0.599 | -- | -- | 0.172 | 21.4 | 19.1 | 617 | -- | -- |
| 74.76 | 0.405 | 8.61 | 0.187 | -- | -0.368 | -- | 0.642 | 0.178 | -- | 20.3 | 278 | -- | -- |
| 46.42 | 0.319 | 8.66 | -0.0147 | 0.798 | -- | 0.438 | -- | 0.0826 | 21.3 | -- | -- | -- | -- |
| 47.11 | 0.321 | 8.66 | -0.0309 | 0.796 | -- | -- | -- | 0.0819 | 21.4 | -- | -- | -- | -- |
| 76.93 | 0.41 | 8.62 | 0.0746 | -- | -0.401 | -- | -- | 0.152 | -- | 20.3 | 278 | -- | -- |
| 41.2 | 0.299 | 8.64 | -- | 0.854 | -0.534 | -- | -- | 0.146 | 21.4 | 19.08 | 617 | -- | -- |
| 84.13 | 0.429 | 8.64 | -0.0267 | -- | -- | -- | -- | 0.0788 | -- | -- | -- | -- | -- |
| 47.13 | 0.321 | 8.66 | -- | 0.796 | -- | -- | -- | 0.0853 | 21.4 | -- | -- | -- | -- |
| 77.04 | 0.409 | 8.62 | -- | -- | -0.392 | -- | -- | 0.145 | -- | 20.2 | 39 | -- | -- |
| 84.15 | 0.428 | 8.63 | -- | -- | -- | -- | -- | 0.0818 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.90 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 2 | 36.17 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 3 | 36.61 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 13 | 36.76 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 14 | 36.76 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 28 | 36.87 | humidity | 90 | 14400 | > th | dose dependent | rect. | 8 | 2 |
| 54 | 37.04 | humidity | 90 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 68 | 37.07 | humidity | 90 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 107 | 37.24 | humidity | 90 | 14400 | > th | dose dependent | sin | 0 | NA |
| 144 | 37.37 | humidity | 90 | 14400 | > th | dose independent | sin | 2 | NA |
| 223 | 37.63 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 22 |
| 228 | 37.65 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 259 | 37.72 | humidity | 90 | 14400 | < th | dose independent | sin | 3 | NA |
| 264 | 37.73 | radiation | 10 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 299 | 37.80 | radiation | 10 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 314 | 37.84 | humidity | 50 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 370 | 37.94 | wind | 5 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 374 | 37.94 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 16 |
| 401 | 38.00 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 18 |
| 412 | 38.01 | radiation | 10 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 469 | 38.10 | wind | 5 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 478 | 38.11 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 494 | 38.13 | temperature | 15 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 495 | 38.13 | wind | 5 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 506 | 38.14 | radiation | 10 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 519 | 38.16 | wind | 3 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 529 | 38.18 | wind | 5 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 567 | 38.25 | wind | 9 | 14400 | < th | dose independent | rect. | 20 | 4 |
| 581 | 38.27 | radiation | 1 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 585 | 38.27 | wind | 7 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 598 | 38.27 | radiation | 1 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 604 | 38.27 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 6 |
| 635 | 38.30 | wind | 9 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 642 | 38.30 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 21 |
| 655 | 38.31 | wind | 3 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 677 | 38.33 | wind | 9 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 708 | 38.35 | wind | 9 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 716 | 38.36 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 725 | 38.36 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 3 |
| 738 | 38.37 | wind | 9 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 749 | 38.37 | wind | 7 | 14400 | > th | dose dependent | rect. | 20 | 5 |
| 800 | 38.40 | humidity | 90 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 811 | 38.40 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 18 | 16 |
| 829 | 38.41 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 22 | 12 |
| 854 | 38.43 | humidity | 90 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 856 | 38.43 | wind | 9 | 14400 | > th | dose dependent | rect. | 23 | 6 |
| 862 | 38.44 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 863 | 38.44 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 864 | 38.44 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 875 | 38.44 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 883 | 38.45 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 896 | 38.46 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 2 | 9 |
| 898 | 38.46 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 24 | 13 |
| 911 | 38.47 | wind | 3 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 914 | 38.47 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 23 | 15 |
| 916 | 38.47 | humidity | 90 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 927 | 38.48 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 932 | 38.48 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 8 | NA |
| 943 | 38.49 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 946 | 38.49 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 2 | 9 |
| 948 | 38.49 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 954 | 38.49 | humidity | 90 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 984 | 38.51 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 23 | 14 |
| 986 | 38.51 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 22 | 16 |