BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0120200 Os08g0120200|AK103562
(799 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0120200 DNA polymerase III, delta family protein 1573 0.0
Os12g0209300 AAA ATPase, central region domain containing p... 333 2e-91
Os05g0529600 DNA polymerase III, delta family protein 278 1e-74
Os01g0730900 Chaperonin clpA/B family protein 195 1e-49
AK105326 123 5e-28
Os02g0775200 Similar to Activator 1 36 kDa subunit (Replica... 75 2e-13
>Os08g0120200 DNA polymerase III, delta family protein
Length = 799
Score = 1573 bits (4072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 783/799 (97%), Positives = 783/799 (97%)
Query: 1 MIEGRRHSVDIPISRALLAVMRSRSLRDPETNSLAKFSAKKTIWEGCSLEEDDLEGSNYG 60
MIEGRRHSVDIPISRALLAVMRSRSLRDPETNSLAKFSAKKTIWEGCSLEEDDLEGSNYG
Sbjct: 1 MIEGRRHSVDIPISRALLAVMRSRSLRDPETNSLAKFSAKKTIWEGCSLEEDDLEGSNYG 60
Query: 61 RHSFSYNMYDHLQRRREEFGDSARSGRLVNSPINIIKANARVKAALHNQTCSSVISGMSR 120
RHSFSYNMYDHLQRRREEFGDSARSGRLVNSPINIIKANARVKAALHNQTCSSVISGMSR
Sbjct: 61 RHSFSYNMYDHLQRRREEFGDSARSGRLVNSPINIIKANARVKAALHNQTCSSVISGMSR 120
Query: 121 ATKDRASSLMIEGEQLGRREGATFQESARSLLQKYRPKAFSELAGQNVVAQSLSSAVLKG 180
ATKDRASSLMIEGEQLGRREGATFQESARSLLQKYRPKAFSELAGQNVVAQSLSSAVLKG
Sbjct: 121 ATKDRASSLMIEGEQLGRREGATFQESARSLLQKYRPKAFSELAGQNVVAQSLSSAVLKG 180
Query: 181 KLAPIYLFHGPHGIGKTSAARIFAASLNCHSSGGNQPCGHCEECMAIFSGNSSSVIEIDA 240
KLAPIYLFHGPHGIGKTSAARIFAASLNCHSSGGNQPCGHCEECMAIFSGNSSSVIEIDA
Sbjct: 181 KLAPIYLFHGPHGIGKTSAARIFAASLNCHSSGGNQPCGHCEECMAIFSGNSSSVIEIDA 240
Query: 241 SKLDCKSRVAALLRNACEVPASSHFKVLIVDDCQHMDKEGWYSVYSSLEGIPDSSIFVMI 300
SKLDCKSRVAALLRNACEVPASSHFKVLIVDDCQHMDKEGWYSVYSSLEGIPDSSIFVMI
Sbjct: 241 SKLDCKSRVAALLRNACEVPASSHFKVLIVDDCQHMDKEGWYSVYSSLEGIPDSSIFVMI 300
Query: 301 TSDIDKLPSNSVGWCQSYRFCKVDEAEIALRLSRICINEGMEFEAEALELIARKANGSIR 360
TSDIDKLPSNSVGWCQSYRFCKVDEAEIALRLSRICINEGMEFEAEALELIARKANGSIR
Sbjct: 301 TSDIDKLPSNSVGWCQSYRFCKVDEAEIALRLSRICINEGMEFEAEALELIARKANGSIR 360
Query: 361 DAVQMLDQLTLLGKRISKSVTYDLIGDVSDEELLDLLNLAFSSDAATIVRRARELLSSKV 420
DAVQMLDQLTLLGKRISKSVTYDLIGDVSDEELLDLLNLAFSSDAATIVRRARELLSSKV
Sbjct: 361 DAVQMLDQLTLLGKRISKSVTYDLIGDVSDEELLDLLNLAFSSDAATIVRRARELLSSKV 420
Query: 421 DPLQLLAQLANLIMDILAGRHQSDSQEVRKVTGKHTSAEIDVHKLRNALEILSETEKQLK 480
DPLQLLAQLANLIMDILAGRHQSDSQEVRKVTGKHTSAEIDVHKLRNALEILSETEKQLK
Sbjct: 421 DPLQLLAQLANLIMDILAGRHQSDSQEVRKVTGKHTSAEIDVHKLRNALEILSETEKQLK 480
Query: 481 TTKNQSTWLTAALLQFNMREPYCLDDAAVSSMFTESQTDDGAAILKDESLDTSSHLCYQN 540
TTKNQSTWLTAALLQFNMREPYCLDDAAVSSMFTESQTDDGAAILKDESLDTSSHLCYQN
Sbjct: 481 TTKNQSTWLTAALLQFNMREPYCLDDAAVSSMFTESQTDDGAAILKDESLDTSSHLCYQN 540
Query: 541 KIGCLDMNLGDPDVLETIWIKALENCTSKPLHSLLRKDGKLSSLYTTQGVAVAELQFCHP 600
KIGCLDMNLGDPDVLETIWIKALENCTSKPLHSLLRKDGKLSSLYTTQGVAVAELQFCHP
Sbjct: 541 KIGCLDMNLGDPDVLETIWIKALENCTSKPLHSLLRKDGKLSSLYTTQGVAVAELQFCHP 600
Query: 601 EDVPTTESFWNPFVVSLQNLLKCNVDIRINLSPIXXXXXXXXXXXXXXXXMQSREDQETE 660
EDVPTTESFWNPFVVSLQNLLKCNVDIRINLSPI MQSREDQETE
Sbjct: 601 EDVPTTESFWNPFVVSLQNLLKCNVDIRINLSPISTSNRVVSKNSSVSLVMQSREDQETE 660
Query: 661 DPVAAGCRTVASSRKECPSPLAVQPKEKPSHILGCLHATDGDAVDTESRILSYQKISVIP 720
DPVAAGCRTVASSRKECPSPLAVQPKEKPSHILGCLHATDGDAVDTESRILSYQKISVIP
Sbjct: 661 DPVAAGCRTVASSRKECPSPLAVQPKEKPSHILGCLHATDGDAVDTESRILSYQKISVIP 720
Query: 721 EASTPGNGSFKAGGHTPKVDEARARRGCFSKLLQRRAGAPYQNGALPRRGLFKCCFCKIR 780
EASTPGNGSFKAGGHTPKVDEARARRGCFSKLLQRRAGAPYQNGALPRRGLFKCCFCKIR
Sbjct: 721 EASTPGNGSFKAGGHTPKVDEARARRGCFSKLLQRRAGAPYQNGALPRRGLFKCCFCKIR 780
Query: 781 PDCKTKVEETDGFQGHSKN 799
PDCKTKVEETDGFQGHSKN
Sbjct: 781 PDCKTKVEETDGFQGHSKN 799
>Os12g0209300 AAA ATPase, central region domain containing protein
Length = 1174
Score = 333 bits (855), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 166/350 (47%), Positives = 236/350 (67%), Gaps = 1/350 (0%)
Query: 149 RSLLQKYRPKAFSELAGQNVVAQSLSSAVLKGKLAPIYLFHGPHGIGKTSAARIFAASLN 208
RSL QKYRPK FSE+ GQ++VAQSLS+A+ + K+AP YLF GP G GKTS ARIF+ L+
Sbjct: 400 RSLSQKYRPKLFSEIVGQHIVAQSLSNAITREKIAPAYLFQGPRGTGKTSTARIFSMGLS 459
Query: 209 CHSSGGNQPCGHCEECMAIFSGNSSSVIEIDASKLDCKSRVAALLRNACEVPASSHFKVL 268
C + G N+PCG C+EC SGN +++IE+DAS +R+ LL N SS +K+
Sbjct: 460 CLAPGENKPCGICKECTDFLSGNGTNLIEVDASNRKSINRIKNLLENIPPSATSSRYKLF 519
Query: 269 IVDDCQHMDKEGWYSVYSSLEGIPDSSIFVMITSDIDKLPSNSVGWCQSYRFCKVDEAEI 328
+VD+C + + W + L+ +FV IT D D LP + CQ Y F K+ + +I
Sbjct: 520 VVDECHMVSSKLWSAFMKFLDEPLPRVVFVFITIDPDNLPRAVISRCQKYVFSKIKDIDI 579
Query: 329 ALRLSRICINEGMEFEAEALELIARKANGSIRDAVQMLDQLTLLGKRISKSVTYDLIGDV 388
RL RIC+ E ++ E AL+LIA ++GS+RDA MLDQL+LLGK+I+ S+ DL+G V
Sbjct: 580 VCRLRRICVKENLDVELAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVNDLVGVV 639
Query: 389 SDEELLDLLNLAFSSDAATIVRRARELLSSKVDPLQLLAQLANLIMDILAGRHQ-SDSQE 447
S+E+LLDLL +A SSD A V+R+REL+ S +DP+ L++QLA LIMDI+AG ++ +DS
Sbjct: 640 SEEKLLDLLEIAMSSDTAETVKRSRELMDSGIDPMALMSQLAGLIMDIIAGTYKLADSTA 699
Query: 448 VRKVTGKHTSAEIDVHKLRNALEILSETEKQLKTTKNQSTWLTAALLQFN 497
G + + ++ +L+ AL+ILS+ EKQ++ + +STW TAALLQ +
Sbjct: 700 NDMAVGGRSLTDGELERLQQALKILSDAEKQIRLSSERSTWFTAALLQLS 749
>Os05g0529600 DNA polymerase III, delta family protein
Length = 1023
Score = 278 bits (710), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 158/381 (41%), Positives = 241/381 (63%), Gaps = 4/381 (1%)
Query: 137 GRREGATFQESARSLLQKYRPKAFSELAGQNVVAQSLSSAVLKGKLAPIYLFHGPHGIGK 196
G+R + + +SL QKY PK F ++ GQ++V Q+LS+A+LK K+ +Y+F+GPHG GK
Sbjct: 342 GQRSRGSHRGRHQSLTQKYSPKTFKDMIGQSLVVQALSNAILKRKIGLVYVFYGPHGTGK 401
Query: 197 TSAARIFAASLNCHSSGGNQPCGHCEECMAIFSGNSSSVIEID-ASKLDCKSRVAALLRN 255
TS AR+FA +LNCHS +PC C C+A G S S++EI +D S + +L N
Sbjct: 402 TSCARVFAKALNCHSPEHPRPCDSCASCIAHNLGKSRSLVEIGPVGNIDLDS-IVDILDN 460
Query: 256 ACEVPASSHFKVLIVDDCQHMDKEGWYSVYSSLEGIPDSSIFVMITSDIDKLPSNSVGWC 315
P + +V IVDDC + + W + +E P +F++I+ ++D LP V C
Sbjct: 461 VMLSPVPTQHRVFIVDDCNTLPPDTWSVISKVIERAPRRVVFILISPNLD-LPHIIVSRC 519
Query: 316 QSYRFCKVDEAEIALRLSRICINEGMEFEAEALELIARKANGSIRDAVQMLDQLTLLGKR 375
Q + F K+ E +I L I +EG++ + +AL+LIA +++GS+RDA LDQL+LLG+R
Sbjct: 520 QKFFFPKLKECDIVNTLQWISTSEGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQR 579
Query: 376 ISKSVTYDLIGDVSDEELLDLLNLAFSSDAATIVRRARELLSSKVDPLQLLAQLANLIMD 435
IS S+ +L+G VSD++L+DLL+LA S+D V+ R++ + V+PL L++QLA +I D
Sbjct: 580 ISMSLVQELVGLVSDDKLVDLLDLALSADTVNTVKTLRDITETGVEPLALMSQLATIITD 639
Query: 436 ILAGRHQSDSQEVRKVTGK-HTSAEIDVHKLRNALEILSETEKQLKTTKNQSTWLTAALL 494
ILAG + + VR+ K T ++ D+ KLR AL+ LSE EKQL+ + ++ TWLTAALL
Sbjct: 640 ILAGTYAFTQERVRRKFFKCPTLSKDDMEKLRQALKTLSEAEKQLRVSNDKMTWLTAALL 699
Query: 495 QFNMREPYCLDDAAVSSMFTE 515
Q + Y L ++ S+ F +
Sbjct: 700 QLAPDKQYVLPSSSTSASFNQ 720
>Os01g0730900 Chaperonin clpA/B family protein
Length = 622
Score = 195 bits (496), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/285 (37%), Positives = 164/285 (57%), Gaps = 2/285 (0%)
Query: 118 MSRATKDRASSLMIEGEQLGRREGATFQESA-RSLLQKYRPKAFSELAGQNVVAQSLSSA 176
S T + S L+ EG + G+ RSL QK+ PK F ++ GQ++V Q+LS+A
Sbjct: 318 FSNQTSEMESDLLSEGRSGHKSRGSQHGRGRHRSLTQKFAPKTFKDVVGQSLVVQALSNA 377
Query: 177 VLKGKLAPIYLFHGPHGIGKTSAARIFAASLNCHSSGGNQPCGHCEECMAIFSGNSSSVI 236
VL+ K+ +Y+F+GPHG GKTS AR+FA +LNCHS +PC C C+A G S SV+
Sbjct: 378 VLRRKIGLVYVFYGPHGTGKTSCARVFAKALNCHSPEHPRPCDSCTSCIAHNLGKSRSVM 437
Query: 237 EIDASKLDCKSRVAALLRNACEVPASSHFKVLIVDDCQHMDKEGWYSVYSSLEGIPDSSI 296
EI + +L N PA SH++V I DDC + + W + ++ P +
Sbjct: 438 EIGPVGNIDMDGIVDVLDNVMLSPAPSHYRVFIFDDCDTLPADTWSLISKVVDRAPRRVV 497
Query: 297 FVMITSDIDKLPSNSVGWCQSYRFCKVDEAEIALRLSRICINEGMEFEAEALELIARKAN 356
F++++ ++D LP + CQ + F K+ E +I L I +E ++ + +AL+LIA +++
Sbjct: 498 FILVSPNLD-LPHIILSRCQKFFFPKLKECDIVNTLQWISTSESLDVDRDALKLIASRSD 556
Query: 357 GSIRDAVQMLDQLTLLGKRISKSVTYDLIGDVSDEELLDLLNLAF 401
GS+RDA LDQL+LLG+RIS S+ +L+ +S LL F
Sbjct: 557 GSLRDAEMTLDQLSLLGQRISLSLVQELVRYLSSLILLPFCFFFF 601
>AK105326
Length = 67
Score = 123 bits (309), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/59 (100%), Positives = 59/59 (100%)
Query: 1 MIEGRRHSVDIPISRALLAVMRSRSLRDPETNSLAKFSAKKTIWEGCSLEEDDLEGSNY 59
MIEGRRHSVDIPISRALLAVMRSRSLRDPETNSLAKFSAKKTIWEGCSLEEDDLEGSNY
Sbjct: 1 MIEGRRHSVDIPISRALLAVMRSRSLRDPETNSLAKFSAKKTIWEGCSLEEDDLEGSNY 59
>Os02g0775200 Similar to Activator 1 36 kDa subunit (Replication factor C 36 kDa
subunit) (A1 36 kDa subunit) (RF-C 36 kDa subunit)
(RFC36) (Replication factor C subunit 5)
Length = 361
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 118/257 (45%), Gaps = 21/257 (8%)
Query: 152 LQKYRPKAFSELAGQNVVAQSLSSAVLKGKLAPIYLFHGPHGIGKTSAARIFAASLNCHS 211
++KYRP++ ++A + ++ + +L P L +GP G GKTS I A + +
Sbjct: 41 VEKYRPQSLGDVAAHRDIVDTIDRLTNENRL-PHLLLYGPPGTGKTST--ILAVARKLYG 97
Query: 212 SG-GNQPCGHCEECMAIFSGNSSSVIEIDASKLDCKSRVAALLRNACEVPASSHFKVLIV 270
S GN I N+S ID + + +A + A K++++
Sbjct: 98 SQYGNM----------ILELNASDERGIDVVRQQIQDFASA---RSLSFGAKQSVKMVLL 144
Query: 271 DDCQHMDKEGWYSVYSSLEGIPDSSIFVMITSDIDKLPSNSVGWCQSYRFCKVDEAEIAL 330
D+ M K+ +++ +E S+ F +I + ++K+ C +RF +D +
Sbjct: 145 DEADAMTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRE 204
Query: 331 RLSRICINEGMEFEAEALELIARKANGSIRDAVQMLDQLTLLGKRISKSVTYDLIGDVSD 390
RL I +EG++ + L + R +NG +R A+ +L + K+I++ Y G+
Sbjct: 205 RLKHIIQSEGLDVDDGGLTALVRLSNGDMRKALNILQSTHMASKQITEEAVYLCTGNPMP 264
Query: 391 EELLD----LLNLAFSS 403
+++ LLN +FS+
Sbjct: 265 KDIEQIAYWLLNESFST 281
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 25,386,941
Number of extensions: 1033028
Number of successful extensions: 2843
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 2834
Number of HSP's successfully gapped: 6
Length of query: 799
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 690
Effective length of database: 11,344,475
Effective search space: 7827687750
Effective search space used: 7827687750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)