Os02g0775200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Activator 1 36 kDa subunit (Replication factor C 36 kDa subunit) (A1 36 kDa subunit) (RF-C 36 kDa subunit) (RFC36) (Replication factor C subunit 5).
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Os02g0775200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Activator 1 36 kDa subunit (Replication factor C 36 kDa subunit) (A1 36 kDa subunit) (RF-C 36 kDa subunit) (RFC36) (Replication factor C subunit 5).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.99 | 0.235 | 11.4 | 0.121 | 0.25 | -0.706 | -0.00653 | -0.257 | -0.0512 | 16.8 | 30.1 | 10 | -- | -- |
| 25.07 | 0.233 | 11.4 | 0.0824 | 0.26 | -0.693 | 0.0425 | -- | -0.0595 | 16.8 | 30.22 | 10 | -- | -- |
| 24.99 | 0.233 | 11.4 | 0.121 | 0.25 | -0.706 | -- | -0.256 | -0.0511 | 16.8 | 30.1 | 10 | -- | -- |
| 25.07 | 0.233 | 11.4 | 0.0789 | 0.252 | -0.708 | -- | -- | -0.0609 | 16.8 | 30.28 | 10 | -- | -- |
| 27.18 | 0.243 | 11.4 | 0.0312 | -- | -0.902 | -- | -0.2 | -0.0963 | -- | 30.13 | 87 | -- | -- |
| 31.58 | 0.263 | 11.4 | 0.242 | 0.461 | -- | 0.2 | -- | 0.0724 | 15.6 | -- | -- | -- | -- |
| 31.7 | 0.264 | 11.4 | 0.246 | 0.462 | -- | -- | -- | 0.0736 | 15.6 | -- | -- | -- | -- |
| 27.25 | 0.243 | 11.4 | 0.013 | -- | -0.924 | -- | -- | -0.109 | -- | 30.1 | 91 | -- | -- |
| 25.22 | 0.234 | 11.4 | -- | 0.242 | -0.74 | -- | -- | -0.0758 | 16.9 | 30.23 | 11 | -- | -- |
| 43.62 | 0.309 | 11.4 | 0.226 | -- | -- | -- | -- | 0.0613 | -- | -- | -- | -- | -- |
| 33.29 | 0.27 | 11.4 | -- | 0.458 | -- | -- | -- | 0.0462 | 15.6 | -- | -- | -- | -- |
| 27.25 | 0.243 | 11.4 | -- | -- | -0.928 | -- | -- | -0.111 | -- | 30.1 | 91 | -- | -- |
| 44.97 | 0.313 | 11.4 | -- | -- | -- | -- | -- | 0.0362 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.36 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 2 | 22.43 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 3 | 22.51 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 6 | 22.67 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 14 | 22.99 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 20 | 23.14 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 33 | 23.38 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 85 | 23.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 88 | 23.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 103 | 23.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 130 | 24.11 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 145 | 24.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 153 | 24.21 | temperature | 10 | 90 | > th | dose dependent | sin | 5 | NA |
| 160 | 24.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 21 |
| 180 | 24.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 213 | 24.43 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 21 |
| 214 | 24.43 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 318 | 24.75 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 369 | 24.90 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 16 |
| 373 | 24.91 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 7 |
| 400 | 24.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 403 | 24.97 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 404 | 24.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 411 | 24.99 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 416 | 25.00 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 421 | 25.00 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 423 | 25.02 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 18 |
| 434 | 25.04 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 442 | 25.07 | temperature | 20 | 10 | > th | dose independent | rect. | 8 | 20 |
| 461 | 25.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 21 |
| 473 | 25.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 20 |
| 502 | 25.18 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 20 |
| 563 | 25.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 566 | 25.31 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 579 | 25.33 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 17 |
| 627 | 25.39 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 634 | 25.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 637 | 25.40 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 3 |
| 701 | 25.49 | temperature | 20 | 10 | > th | dose independent | rect. | 8 | 18 |
| 795 | 25.60 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 804 | 25.61 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 852 | 25.68 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 6 |
| 883 | 25.70 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 915 | 25.74 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 926 | 25.75 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 7 |
| 976 | 25.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 16 |