Os12g0176500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Replication factor C subunit RFC4.
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Os12g0176500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Replication factor C subunit RFC4.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.55 | 0.211 | 11.4 | -0.0368 | 0.816 | 0.0345 | -0.364 | -3.87 | -0.0528 | 19.3 | 30 | 4320 | -- | -- |
| 24.25 | 0.229 | 11.3 | 0.536 | 0.802 | -0.218 | -0.42 | -- | 0.0634 | 19.4 | 32.26 | 24219 | -- | -- |
| 20.9 | 0.213 | 11.4 | -0.0257 | 0.813 | 0.0322 | -- | -3.86 | -0.0538 | 19.3 | 30.04 | 4320 | -- | -- |
| 22.67 | 0.222 | 11.3 | 0.564 | 0.794 | -0.406 | -- | -- | 0.21 | 19.3 | 33.1 | 19502 | -- | -- |
| 55.67 | 0.347 | 11.4 | -0.313 | -- | 0.1 | -- | -4.34 | -0.136 | -- | 29.4 | 4240 | -- | -- |
| 28.16 | 0.249 | 11.3 | 0.512 | 0.828 | -- | -0.357 | -- | 0.0323 | 19.1 | -- | -- | -- | -- |
| 28.49 | 0.25 | 11.3 | 0.519 | 0.827 | -- | -- | -- | 0.0315 | 19.1 | -- | -- | -- | -- |
| 56.92 | 0.351 | 11.3 | 0.698 | -- | -0.412 | -- | -- | 0.177 | -- | 32.4 | 12842 | -- | -- |
| 33.45 | 0.269 | 11.3 | -- | 0.82 | -0.268 | -- | -- | 0.0843 | 19.2 | 32.8 | 17640 | -- | -- |
| 64.6 | 0.376 | 11.3 | 0.503 | -- | -- | -- | -- | 0.0168 | -- | -- | -- | -- | -- |
| 35.59 | 0.279 | 11.3 | -- | 0.822 | -- | -- | -- | -0.0263 | 19.2 | -- | -- | -- | -- |
| 67.9 | 0.384 | 11.3 | -- | -- | -0.281 | -- | -- | 0.0927 | -- | 33.1 | 12894 | -- | -- |
| 71.28 | 0.394 | 11.3 | -- | -- | -- | -- | -- | -0.039 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.42 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 3 |
| 2 | 20.45 | temperature | 30 | 4320 | > th | dose independent | rect. | 18 | 21 |
| 5 | 20.46 | temperature | 30 | 4320 | > th | dose independent | sin | 5 | NA |
| 7 | 20.46 | temperature | 30 | 4320 | < th | dose independent | sin | 7 | NA |
| 12 | 20.47 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 7 |
| 37 | 20.50 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 5 |
| 51 | 20.50 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 19 |
| 57 | 20.51 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 9 |
| 67 | 20.51 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 21 |
| 72 | 20.52 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 73 | 20.52 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 3 |
| 74 | 20.52 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 5 |
| 95 | 20.52 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 22 |
| 158 | 20.54 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 23 |
| 161 | 20.54 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 163 | 20.55 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 276 | 20.55 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 23 |
| 340 | 20.58 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 474 | 20.59 | temperature | 30 | 4320 | > th | dose independent | rect. | 12 | 23 |
| 520 | 20.61 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 14 |
| 549 | 20.63 | temperature | 30 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 654 | 20.70 | temperature | 30 | 4320 | > th | dose dependent | rect. | 10 | 4 |
| 680 | 20.71 | temperature | 30 | 4320 | > th | dose dependent | rect. | 18 | 20 |
| 754 | 20.75 | temperature | 30 | 4320 | > th | dose dependent | sin | 6 | NA |
| 809 | 20.77 | temperature | 30 | 4320 | > th | dose dependent | sin | 3 | NA |
| 910 | 20.84 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |