BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0176500 Os12g0176500|AB045677
(339 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0176500 Similar to Replication factor C subunit RFC4 672 0.0
Os02g0775200 Similar to Activator 1 36 kDa subunit (Replica... 212 3e-55
Os04g0569000 Similar to Activator 1 40 kDa subunit (Replica... 207 7e-54
Os03g0792600 AAA ATPase domain containing protein 115 4e-26
Os11g0572100 Similar to DNA ligase (EC 6.5.1.2) 76 4e-14
Os12g0209300 AAA ATPase, central region domain containing p... 74 2e-13
>Os12g0176500 Similar to Replication factor C subunit RFC4
Length = 339
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/339 (96%), Positives = 327/339 (96%)
Query: 1 MAPLVPSSQPWVEKYRPRQVKDVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTAL 60
MAPLVPSSQPWVEKYRPRQVKDVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLVPSSQPWVEKYRPRQVKDVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTAL 60
Query: 61 AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIIL 120
AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIIL
Sbjct: 61 AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIIL 120
Query: 121 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSN 180
DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSN
Sbjct: 121 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSN 180
Query: 181 RILHICNEEGLSLDAQALATLSTISNGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIP 240
RILHICNEEGLSLDAQALATLSTISNGDLRRAITYLQSAARLFG GAIP
Sbjct: 181 RILHICNEEGLSLDAQALATLSTISNGDLRRAITYLQSAARLFGSSISSTDLISVSGAIP 240
Query: 241 EDVVKSLLASCKSGEFDVANKEVNNIIADGYPVSQLISQFLDVIVNADDIPDEQKARICK 300
EDVVKSLLASCKSGEFDVANKEVNNIIADGYPVSQLISQFLDVIVNADDIPDEQKARICK
Sbjct: 241 EDVVKSLLASCKSGEFDVANKEVNNIIADGYPVSQLISQFLDVIVNADDIPDEQKARICK 300
Query: 301 KLGEADKCLVDGADEYLQLLDVASETIRALFDMPQTLVF 339
KLGEADKCLVDGADEYLQLLDVASETIRALFDMPQTLVF
Sbjct: 301 KLGEADKCLVDGADEYLQLLDVASETIRALFDMPQTLVF 339
>Os02g0775200 Similar to Activator 1 36 kDa subunit (Replication factor C 36 kDa
subunit) (A1 36 kDa subunit) (RF-C 36 kDa subunit)
(RFC36) (Replication factor C subunit 5)
Length = 361
Score = 212 bits (540), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 142/210 (67%), Gaps = 7/210 (3%)
Query: 10 PWVEKYRPRQVKDVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGP 69
PWVEKYRP+ + DVA ++V + LPH+L YGPPGTGKT+T LA+A +LYG
Sbjct: 39 PWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGS 98
Query: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSARKGGYPCP-PYKIIILDEADSMTE 128
+ Y + +LELNASD+RGI+VVR +I+DFA SAR + K+++LDEAD+MT+
Sbjct: 99 Q-YGNMILELNASDERGIDVVRQQIQDFA-----SARSLSFGAKQSVKMVLLDEADAMTK 152
Query: 129 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 188
DAQ ALRR +E +++ TRF ICN++++II L SRC +FRF PL + R+ HI
Sbjct: 153 DAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRERLKHIIQS 212
Query: 189 EGLSLDAQALATLSTISNGDLRRAITYLQS 218
EGL +D L L +SNGD+R+A+ LQS
Sbjct: 213 EGLDVDDGGLTALVRLSNGDMRKALNILQS 242
>Os04g0569000 Similar to Activator 1 40 kDa subunit (Replication factor C 40 kDa
subunit) (A1 40 kDa subunit) (RF-C 40 kDa subunit)
(RFC40)
Length = 335
Score = 207 bits (528), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 176/310 (56%), Gaps = 9/310 (2%)
Query: 10 PWVEKYRPRQVKDVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGP 69
PWVEKYRP +V DV + V L + ++P+++ GPPGTGKTT+ L++A++L GP
Sbjct: 18 PWVEKYRPTRVADVGGNSDAVARLQDIARDGNMPNLILSGPPGTGKTTSILSLAHELLGP 77
Query: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTED 129
Y+ VLELNASDDRG++VVR KIK FA V + + G +KI+ILDEADSMT
Sbjct: 78 S-YREAVLELNASDDRGLDVVRNKIKMFAQKKV-TLQPG-----RHKIVILDEADSMTSG 130
Query: 130 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEE 189
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS++ + R++ + E
Sbjct: 131 AQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAE 190
Query: 190 GLSLDAQALATLSTISNGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPEDVVKSLLA 249
+ + L + ++GD+R+A+ LQ+ F P VK+++
Sbjct: 191 KVPYVPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPHPLH-VKNMVK 249
Query: 250 SCKSGEFDVANKEVNNIIADGYPVSQLISQFLDVIVNADDIPDEQKARICKKLGEADKCL 309
+ G+FD A + + GY + +I+ VI N D+ + K + K+ G A +
Sbjct: 250 NVLDGKFDEACSALKQLYDLGYSPTDIITTLFRVIKNY-DMAEYLKLELLKETGFAHMRI 308
Query: 310 VDGADEYLQL 319
DG +LQL
Sbjct: 309 CDGVGSFLQL 318
>Os03g0792600 AAA ATPase domain containing protein
Length = 354
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 118/238 (49%), Gaps = 36/238 (15%)
Query: 11 WVEKYRPRQVKDVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 70
WV+KYRP+ + V ++V + L + D PH+LFYGP G+GK T +A+ Q++G
Sbjct: 3 WVDKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFGAG 62
Query: 71 LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAAV 100
K ++ +E+N SD DR VV+ IK+ A
Sbjct: 63 ADKVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDR--YVVQEVIKEMAKN 120
Query: 101 AVGSARKGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 160
A KG +K+++L+E D ++ +AQ++LRRTME YS R CN S++ E
Sbjct: 121 RPIDA-KGKRA---FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEA 176
Query: 161 LASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDAQALATLSTISNGDLRRAITYLQS 218
+ SRC R SE+ + + I +E L L A ++ SN +LRRAI + ++
Sbjct: 177 VRSRCLNVRVNAPSEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFET 234
>Os11g0572100 Similar to DNA ligase (EC 6.5.1.2)
Length = 1021
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 109/241 (45%), Gaps = 43/241 (17%)
Query: 11 WVEKYRPRQVKDVAHQEEVVRVLTTTLQTAD--------------------LPHMLFYGP 50
W EKYRP+ D+ + +V+ L L++ + +L GP
Sbjct: 408 WTEKYRPKVPNDIVGNQSMVKQLHDWLRSWEDQFLHSGQKGKGKKQADSGAKKAVLLSGP 467
Query: 51 PGTGKTTTALAIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSARK--- 107
PG GKTTTA ++ Q+ G + +E+NASD RG +KI+ + ++ K
Sbjct: 468 PGIGKTTTAKVVS-QMLGLQ-----AIEVNASDSRG--KADSKIEKGVGGSTSNSIKELI 519
Query: 108 --------GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC---NYISR 156
P ++++DE D M+ + + + + K+++ IC + S+
Sbjct: 520 SNATLNYSNNRLKRPKAVLVMDEVDGMSAGDRGGVADLIASI-KMSKIPIICICNDRYSQ 578
Query: 157 IIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDAQALATLSTISNGDLRRAITYL 216
++ L + C F+ +++ M R++ I +EGL A+ L+ +GD+R A+ +L
Sbjct: 579 KLKSLVNYCLLLNFRKPTKQQMGKRLMEIAKKEGLQAQENAMEELAERVHGDIRMALNHL 638
Query: 217 Q 217
Q
Sbjct: 639 Q 639
>Os12g0209300 AAA ATPase, central region domain containing protein
Length = 1174
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 140/343 (40%), Gaps = 41/343 (11%)
Query: 13 EKYRPRQVKDVAHQEEVVRVLTTTLQTADL-PHMLFYGPPGTGKTTTA--LAIAYQLYGP 69
+KYRP+ ++ Q V + L+ + + P LF GP GTGKT+TA ++ P
Sbjct: 404 QKYRPKLFSEIVGQHIVAQSLSNAITREKIAPAYLFQGPRGTGKTSTARIFSMGLSCLAP 463
Query: 70 ELYK----------------SRVLELNASDDRGINVVRTKIKDFAAVAVGSARKGGYPCP 113
K + ++E++AS+ + IN ++ +++ A S
Sbjct: 464 GENKPCGICKECTDFLSGNGTNLIEVDASNRKSINRIKNLLENIPPSATSSR-------- 515
Query: 114 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 173
YK+ ++DE ++ +A + ++ F FI + + SRC K+ F +
Sbjct: 516 -YKLFVVDECHMVSSKLWSAFMKFLDEPLPRVVFVFITIDPDNLPRAVISRCQKYVFSKI 574
Query: 174 SEEVMSNRILHICNEEGLSLDAQALATLSTISNGDLRRAITYLQSAARLFGXXXXXXXXX 233
+ + R+ IC +E L ++ AL ++ S+G LR A T L + L G
Sbjct: 575 KDIDIVCRLRRICVKENLDVELAALDLIALNSDGSLRDAETMLDQLS-LLGKKITPSLVN 633
Query: 234 XXXGAIPEDVVKSLLASCKSGEFDVANKEVNNIIADGYP----VSQLISQFLDVIVNADD 289
G + E+ + LL S + K ++ G +SQL +D+I
Sbjct: 634 DLVGVVSEEKLLDLLEIAMSSDTAETVKRSRELMDSGIDPMALMSQLAGLIMDIIAGTYK 693
Query: 290 IPDEQKARICKKLGEADKCLVDGADEYLQ----LLDVASETIR 328
+ D + + L DG E LQ +L A + IR
Sbjct: 694 LADS----TANDMAVGGRSLTDGELERLQQALKILSDAEKQIR 732
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,633,820
Number of extensions: 405045
Number of successful extensions: 1216
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1210
Number of HSP's successfully gapped: 6
Length of query: 339
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 237
Effective length of database: 11,709,973
Effective search space: 2775263601
Effective search space used: 2775263601
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)