Os04g0569000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Activator 1 40 kDa subunit (Replication factor C 40 kDa subunit) (A1 40 kDa subunit) (RF-C 40 kDa subunit) (RFC40).
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Os04g0569000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Activator 1 40 kDa subunit (Replication factor C 40 kDa subunit) (A1 40 kDa subunit) (RF-C 40 kDa subunit) (RFC40).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.33 | 0.346 | 9.16 | 0.987 | 1.14 | 0.662 | 0.183 | -0.759 | 0.118 | 21.3 | 19.97 | 291 | -- | -- |
| 55.41 | 0.347 | 9.18 | 0.958 | 1.17 | 0.86 | 0.231 | -- | 0.104 | 21.2 | 19.5 | 296 | -- | -- |
| 54.45 | 0.344 | 9.16 | 0.982 | 1.14 | 0.656 | -- | -0.774 | 0.118 | 21.3 | 19.98 | 294 | -- | -- |
| 55.59 | 0.347 | 9.18 | 0.927 | 1.16 | 0.867 | -- | -- | 0.0983 | 21.2 | 19.5 | 298 | -- | -- |
| 123.49 | 0.52 | 9.13 | 0.932 | -- | 0.681 | -- | -0.656 | 0.121 | -- | 20.59 | 132 | -- | -- |
| 72.84 | 0.4 | 9.2 | 0.628 | 1.14 | -- | 0.0554 | -- | -0.0381 | 21.6 | -- | -- | -- | -- |
| 72.85 | 0.4 | 9.2 | 0.626 | 1.14 | -- | -- | -- | -0.0382 | 21.6 | -- | -- | -- | -- |
| 125.81 | 0.525 | 9.14 | 0.812 | -- | 0.713 | -- | -- | 0.0944 | -- | 20.6 | 103 | -- | -- |
| 73.91 | 0.4 | 9.19 | -- | 1.12 | 0.502 | -- | -- | 0.00112 | 21.4 | 20.5 | 260 | -- | -- |
| 149.48 | 0.571 | 9.17 | 0.635 | -- | -- | -- | -- | -0.0404 | -- | -- | -- | -- | -- |
| 83.18 | 0.427 | 9.22 | -- | 1.14 | -- | -- | -- | -0.108 | 21.7 | -- | -- | -- | -- |
| 142.62 | 0.558 | 9.17 | -- | -- | 0.603 | -- | -- | -0.0135 | -- | 20.56 | 111 | -- | -- |
| 160.13 | 0.591 | 9.19 | -- | -- | -- | -- | -- | -0.111 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.84 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 14 |
| 7 | 51.94 | temperature | 20 | 270 | < th | dose independent | rect. | 22 | 20 |
| 9 | 52.03 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 22 |
| 10 | 52.08 | temperature | 20 | 270 | < th | dose independent | sin | 7 | NA |
| 15 | 52.27 | temperature | 20 | 270 | < th | dose independent | rect. | 22 | 12 |
| 27 | 52.81 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 22 |
| 30 | 52.86 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 22 |
| 83 | 53.85 | temperature | 20 | 270 | < th | dose independent | rect. | 12 | 22 |
| 100 | 54.09 | temperature | 20 | 270 | > th | dose independent | sin | 7 | NA |
| 114 | 54.41 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 118 | 54.45 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 210 | 55.63 | temperature | 25 | 270 | < th | dose dependent | sin | 8 | NA |
| 228 | 55.84 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 11 |
| 230 | 55.90 | temperature | 20 | 270 | < th | dose dependent | rect. | 23 | 9 |
| 365 | 57.40 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 407 | 57.72 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 447 | 57.92 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 21 |
| 457 | 57.99 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 19 |
| 597 | 58.51 | temperature | 20 | 30 | < th | dose independent | rect. | 5 | 23 |
| 714 | 58.93 | temperature | 10 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 780 | 59.16 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 4 |
| 795 | 59.21 | temperature | 30 | 4320 | < th | dose dependent | rect. | 10 | 2 |
| 851 | 59.32 | temperature | 15 | 270 | > th | dose dependent | sin | 9 | NA |
| 858 | 59.34 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 893 | 59.43 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 1 |
| 912 | 59.47 | temperature | 10 | 90 | > th | dose dependent | sin | 7 | NA |
| 970 | 59.62 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 4 |