BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0771500 Os02g0771500|AK106018
(91 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0771500 Similar to Pap1p 146 2e-36
Os01g0702900 Similar to Sucrose-phosphate synthase (EC 2.4.... 122 5e-29
Os04g0588300 112 4e-26
AK103720 108 6e-25
Os06g0558700 Similar to Poly(A) polymerase 108 6e-25
Os02g0227400 Poly(A) polymerase, central region domain cont... 102 6e-23
Os06g0319600 Poly(A) polymerase, central region domain cont... 99 9e-22
Os07g0688500 Poly(A) polymerase, central region domain cont... 72 1e-13
>Os02g0771500 Similar to Pap1p
Length = 91
Score = 146 bits (369), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/70 (100%), Positives = 70/70 (100%)
Query: 1 RPRHGAQPHGIRVADEILRLVPDTAAFRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILV 60
RPRHGAQPHGIRVADEILRLVPDTAAFRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILV
Sbjct: 1 RPRHGAQPHGIRVADEILRLVPDTAAFRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILV 60
Query: 61 ARVCQLYPNT 70
ARVCQLYPNT
Sbjct: 61 ARVCQLYPNT 70
>Os01g0702900 Similar to Sucrose-phosphate synthase (EC 2.4.1.14)
Length = 129
Score = 122 bits (306), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 58/62 (93%), Positives = 61/62 (98%)
Query: 9 HGIRVADEILRLVPDTAAFRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILVARVCQLYP 68
+GIRVADEILRLVP+TA FRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILVAR+CQLYP
Sbjct: 47 NGIRVADEILRLVPETAVFRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILVARMCQLYP 106
Query: 69 NT 70
NT
Sbjct: 107 NT 108
>Os04g0588300
Length = 556
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 53/61 (86%), Positives = 56/61 (91%)
Query: 9 HGIRVADEILRLVPDTAAFRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILVARVCQLYP 68
+G+RVADEILRLVPD AFRT LRCVKHWAKARGVYSNVAGFLGG+GWAILVA VC LYP
Sbjct: 192 NGVRVADEILRLVPDATAFRTTLRCVKHWAKARGVYSNVAGFLGGVGWAILVACVCLLYP 251
Query: 69 N 69
N
Sbjct: 252 N 252
>AK103720
Length = 898
Score = 108 bits (271), Expect = 6e-25, Method: Composition-based stats.
Identities = 46/61 (75%), Positives = 53/61 (86%)
Query: 9 HGIRVADEILRLVPDTAAFRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILVARVCQLYP 68
+G RVAD+ILRLVP+ FRT LRC+K+WAK RGVYSNV GFLGG+ WA+LVARVCQLYP
Sbjct: 203 NGCRVADQILRLVPNVENFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWALLVARVCQLYP 262
Query: 69 N 69
N
Sbjct: 263 N 263
>Os06g0558700 Similar to Poly(A) polymerase
Length = 708
Score = 108 bits (271), Expect = 6e-25, Method: Composition-based stats.
Identities = 46/61 (75%), Positives = 53/61 (86%)
Query: 9 HGIRVADEILRLVPDTAAFRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILVARVCQLYP 68
+G RVAD+ILRLVP+ FRT LRC+K+WAK RGVYSNV GFLGG+ WA+LVARVCQLYP
Sbjct: 203 NGCRVADQILRLVPNVENFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWALLVARVCQLYP 262
Query: 69 N 69
N
Sbjct: 263 N 263
>Os02g0227400 Poly(A) polymerase, central region domain containing protein
Length = 602
Score = 102 bits (254), Expect = 6e-23, Method: Composition-based stats.
Identities = 43/61 (70%), Positives = 51/61 (83%)
Query: 9 HGIRVADEILRLVPDTAAFRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILVARVCQLYP 68
+G RVAD+ILRLVP+ FR LRC+K+WA+ RGVYSNV G LGG+ WA+LVARVCQLYP
Sbjct: 198 NGCRVADQILRLVPNAEIFRKTLRCLKYWAQRRGVYSNVTGLLGGVSWALLVARVCQLYP 257
Query: 69 N 69
N
Sbjct: 258 N 258
>Os06g0319600 Poly(A) polymerase, central region domain containing protein
Length = 769
Score = 98.6 bits (244), Expect = 9e-22, Method: Composition-based stats.
Identities = 43/61 (70%), Positives = 50/61 (81%)
Query: 9 HGIRVADEILRLVPDTAAFRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILVARVCQLYP 68
+G RV D+ILRLVP+ FRT LR ++ WAK RGVYSNV GFLGGI WA+LVAR+CQLYP
Sbjct: 215 NGCRVTDKILRLVPNILTFRTTLRFMRFWAKRRGVYSNVIGFLGGINWALLVARICQLYP 274
Query: 69 N 69
N
Sbjct: 275 N 275
>Os07g0688500 Poly(A) polymerase, central region domain containing protein
Length = 447
Score = 71.6 bits (174), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/59 (50%), Positives = 43/59 (72%)
Query: 10 GIRVADEILRLVPDTAAFRTMLRCVKHWAKARGVYSNVAGFLGGIGWAILVARVCQLYP 68
G+RV ++I++LVP+ F+ +LRC+K WAK RG++ ++ GF GI AIL A VCQ YP
Sbjct: 199 GVRVNEQIVQLVPNAQKFQILLRCIKLWAKRRGIHCHLLGFFAGIHLAILAAYVCQRYP 257
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.142 0.474
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,608,831
Number of extensions: 80197
Number of successful extensions: 223
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 8
Length of query: 91
Length of database: 17,035,801
Length adjustment: 61
Effective length of query: 30
Effective length of database: 13,850,747
Effective search space: 415522410
Effective search space used: 415522410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)