Os06g0319600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Poly(A) polymerase, central region domain containing protein.
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Os06g0319600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Poly(A) polymerase, central region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 376.23 | 0.911 | 6.53 | -0.0866 | 1.04 | -1.97 | -0.916 | -1.21 | -0.836 | 9.68 | -0.0139 | 6729 | -- | -- |
| 377.42 | 0.905 | 6.53 | -0.126 | 1.05 | -2.16 | -0.983 | -- | -0.838 | 9.66 | -0.1022 | 6260 | -- | -- |
| 379.36 | 0.907 | 6.53 | -0.119 | 1.04 | -1.97 | -- | -1.21 | -0.837 | 9.77 | -0.01351 | 6731 | -- | -- |
| 381.23 | 0.909 | 6.52 | -0.112 | 1.04 | -2.14 | -- | -- | -0.824 | 9.69 | -0.08061 | 6265 | -- | -- |
| 442.89 | 0.98 | 6.55 | -0.121 | -- | -2.04 | -- | -0.948 | -0.815 | -- | -0.06813 | 6440 | -- | -- |
| 494.44 | 1.04 | 6.44 | -0.559 | 1.03 | -- | -0.946 | -- | -0.528 | 9.6 | -- | -- | -- | -- |
| 497.69 | 1.04 | 6.44 | -0.593 | 1.03 | -- | -- | -- | -0.528 | 9.75 | -- | -- | -- | -- |
| 442.98 | 0.98 | 6.54 | -0.142 | -- | -2.18 | -- | -- | -0.846 | -- | -0.2034 | 6262 | -- | -- |
| 381.48 | 0.91 | 6.51 | -- | 1.01 | -2.18 | -- | -- | -0.847 | 9.81 | -0.1012 | 6262 | -- | -- |
| 561.27 | 1.11 | 6.47 | -0.603 | -- | -- | -- | -- | -0.527 | -- | -- | -- | -- | -- |
| 506.95 | 1.05 | 6.43 | -- | 1.03 | -- | -- | -- | -0.462 | 9.79 | -- | -- | -- | -- |
| 443.48 | 0.981 | 6.54 | -- | -- | -2.21 | -- | -- | -0.836 | -- | -0.1239 | 6260 | -- | -- |
| 570.86 | 1.12 | 6.45 | -- | -- | -- | -- | -- | -0.46 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 378.87 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 2 | 378.90 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 4 | 379.12 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 23 | 383.51 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 15 |
| 24 | 383.66 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 14 |
| 25 | 383.66 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 14 |
| 26 | 383.70 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 14 |
| 27 | 383.74 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 30 | 383.85 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 31 | 383.85 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 11 |
| 35 | 383.87 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 40 | 383.99 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 11 |
| 58 | 384.52 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 5 |
| 71 | 384.76 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 8 |
| 72 | 384.76 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 8 |
| 77 | 384.79 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 17 | NA |
| 78 | 384.79 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 17 | NA |
| 82 | 384.83 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 17 | NA |
| 88 | 384.87 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 8 |
| 99 | 385.08 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 10 |
| 102 | 385.08 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 10 |
| 112 | 385.21 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 119 | 385.28 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 19 |
| 134 | 385.39 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 136 | 385.39 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 137 | 385.39 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 9 | 10 |
| 138 | 385.41 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 9 | 13 |
| 144 | 385.48 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 11 |
| 148 | 385.56 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 22 |
| 157 | 385.64 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 195 | 385.87 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 204 | 385.96 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 264 | 386.37 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 8 |
| 266 | 386.37 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 269 | 386.38 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 14 | NA |
| 292 | 386.51 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 298 | 386.52 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 21 |
| 334 | 386.68 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 22 | 23 |
| 337 | 386.70 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 346 | 386.73 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 21 |
| 352 | 386.78 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 353 | 386.78 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 19 | 2 |
| 359 | 386.80 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 12 | 7 |
| 367 | 386.84 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 24 | 23 |
| 376 | 386.89 | humidity | 60.0 | 14400 | > th | dose dependent | sin | 21 | NA |
| 383 | 386.89 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 396 | 386.94 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 442 | 387.15 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 15 |
| 445 | 387.17 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 622 | 388.15 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 17 |
| 655 | 388.31 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 8 |
| 658 | 388.33 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 660 | 388.33 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 5 |
| 665 | 388.36 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 14 |
| 674 | 388.43 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 676 | 388.45 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 9 | 6 |
| 723 | 388.67 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 775 | 388.90 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 839 | 389.21 | humidity | 90.0 | 14400 | < th | dose dependent | sin | 20 | NA |
| 958 | 389.69 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 15 |